RNA–Protein interactions for RNA: ENST00000579289.1

SUPT4H1-203, Transcript of SPT4 homolog, DSIF elongation factor subunit, humanhuman

TSL 3

Gene SUPT4H1, Length 318 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUPT4H1-203ENST00000579289 NISCHQ9Y2I1 1504 aa29.27■■■□□ 2.28
SUPT4H1-203ENST00000579289 ABCC9O60706 1549 aa26.98■■□□□ 1.91
SUPT4H1-203ENST00000579289 CCDC180Q9P1Z9 1646 aa26.44■■□□□ 1.82
SUPT4H1-203ENST00000579289 DNAJC5BQ9UF47 199 aa26.01■■□□□ 1.75
SUPT4H1-203ENST00000579289 RB1CC1Q8TDY2 1594 aa25.39■■□□□ 1.66
SUPT4H1-203ENST00000579289 NACADO15069 1562 aa25.14■■□□□ 1.61
SUPT4H1-203ENST00000579289 PABPN1Q86U42 306 aaKnown RBP eCLIP25.04■■□□□ 1.6
SUPT4H1-203ENST00000579289 UNC13AQ9UPW8 1703 aa24.94■■□□□ 1.58
SUPT4H1-203ENST00000579289 BICRAQ9NZM4 1560 aa24.88■■□□□ 1.57
SUPT4H1-203ENST00000579289 DCAF8L2P0C7V8 631 aa24.69■■□□□ 1.54
SUPT4H1-203ENST00000579289 MYO15BQ96JP2 1530 aa24.69■■□□□ 1.54
SUPT4H1-203ENST00000579289 CC2D2AQ9P2K1 1620 aa24.38■■□□□ 1.49
SUPT4H1-203ENST00000579289 CECR2Q9BXF3 1484 aa24.36■■□□□ 1.49
SUPT4H1-203ENST00000579289 SHROOM4Q9ULL8 1493 aa24.33■■□□□ 1.49
SUPT4H1-203ENST00000579289 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.47
SUPT4H1-203ENST00000579289 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
SUPT4H1-203ENST00000579289 DNAJC5Q9H3Z4 198 aa24.17■■□□□ 1.46
SUPT4H1-203ENST00000579289 ZCCHC6Q5VYS8 1495 aaKnown RBP24.15■■□□□ 1.46
SUPT4H1-203ENST00000579289 SCRIBQ14160 1630 aa24.02■■□□□ 1.44
SUPT4H1-203ENST00000579289 CUX2O14529 1486 aa23.48■■□□□ 1.35
SUPT4H1-203ENST00000579289 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
SUPT4H1-203ENST00000579289 ERCC6Q03468 1493 aa23.19■■□□□ 1.3
SUPT4H1-203ENST00000579289 ATAD2BQ9ULI0 1458 aa23.12■■□□□ 1.29
SUPT4H1-203ENST00000579289 NESP48681 1621 aa23.09■■□□□ 1.29
SUPT4H1-203ENST00000579289 HMGXB3Q12766 1538 aa23.01■■□□□ 1.27
SUPT4H1-203ENST00000579289 THOC2Q8NI27 1593 aaKnown RBP22.97■■□□□ 1.27
SUPT4H1-203ENST00000579289 SMARCA2P51531 1590 aa22.93■■□□□ 1.26
SUPT4H1-203ENST00000579289 SMARCA4P51532 1647 aa22.92■■□□□ 1.26
SUPT4H1-203ENST00000579289 PEG3Q9GZU2 1588 aa22.78■■□□□ 1.24
SUPT4H1-203ENST00000579289 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
SUPT4H1-203ENST00000579289 BAZ1BQ9UIG0 1483 aaKnown RBP22.75■■□□□ 1.23
SUPT4H1-203ENST00000579289 KIF21AQ7Z4S6 1674 aa22.72■■□□□ 1.23
SUPT4H1-203ENST00000579289 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
SUPT4H1-203ENST00000579289 BAZ1AQ9NRL2 1556 aaPredicted RBP22.67■■□□□ 1.22
SUPT4H1-203ENST00000579289 PDS5BQ9NTI5 1447 aa22.59■■□□□ 1.21
SUPT4H1-203ENST00000579289 MROH2BQ7Z745 1585 aa22.58■■□□□ 1.2
SUPT4H1-203ENST00000579289 WDR62O43379 1518 aa22.51■■□□□ 1.19
SUPT4H1-203ENST00000579289 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
SUPT4H1-203ENST00000579289 MRC2Q9UBG0 1479 aa22.48■■□□□ 1.19
SUPT4H1-203ENST00000579289 OSCARQ8IYS5 282 aa22.26■■□□□ 1.15
SUPT4H1-203ENST00000579289 CEP164Q9UPV0 1460 aa22.24■■□□□ 1.15
SUPT4H1-203ENST00000579289 WIZO95785 1651 aa22.23■■□□□ 1.15
SUPT4H1-203ENST00000579289 FANCD2Q9BXW9 1451 aa22.22■■□□□ 1.15
SUPT4H1-203ENST00000579289 CFTRP13569 1480 aa22.17■■□□□ 1.14
SUPT4H1-203ENST00000579289 URB2Q14146 1524 aaKnown RBP22.15■■□□□ 1.14
SUPT4H1-203ENST00000579289 RIMBP3CA6NJZ7 1639 aa22.1■■□□□ 1.13
SUPT4H1-203ENST00000579289 RIMBP3BA6NNM3 1639 aa22.1■■□□□ 1.13
SUPT4H1-203ENST00000579289 RIMBP3Q9UFD9 1639 aa22.1■■□□□ 1.13
SUPT4H1-203ENST00000579289 ARHGEF11O15085 1522 aa21.98■■□□□ 1.11
SUPT4H1-203ENST00000579289 ZNF608Q9ULD9 1512 aaPredicted RBP21.96■■□□□ 1.11
SUPT4H1-203ENST00000579289 RSF1Q96T23 1441 aaPredicted RBP21.9■■□□□ 1.1
SUPT4H1-203ENST00000579289 TOP2AP11388 1531 aaKnown RBP21.88■■□□□ 1.09
SUPT4H1-203ENST00000579289 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
SUPT4H1-203ENST00000579289 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
SUPT4H1-203ENST00000579289 CYB5RLQ6IPT4 315 aa21.77■■□□□ 1.08
SUPT4H1-203ENST00000579289 ARAP1Q96P48 1450 aa21.77■■□□□ 1.07
SUPT4H1-203ENST00000579289 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
SUPT4H1-203ENST00000579289 EIF4G3O43432 1585 aaKnown RBP21.74■■□□□ 1.07
SUPT4H1-203ENST00000579289 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
SUPT4H1-203ENST00000579289 TARBP1Q13395 1621 aaKnown RBP21.68■■□□□ 1.06
SUPT4H1-203ENST00000579289 CHD1O14646 1710 aa21.66■■□□□ 1.06
SUPT4H1-203ENST00000579289 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.065e-8■■■■■ 33.9
SUPT4H1-203ENST00000579289 DNMBPQ6XZF7 1577 aa21.6■■□□□ 1.05
SUPT4H1-203ENST00000579289 ABCC8Q09428 1581 aa21.59■■□□□ 1.05
SUPT4H1-203ENST00000579289 TRHP20396 242 aaPredicted RBP21.58■■□□□ 1.05
SUPT4H1-203ENST00000579289 POLA1P09884 1462 aaPredicted RBP21.52■■□□□ 1.04
SUPT4H1-203ENST00000579289 CLASP1Q7Z460 1538 aa21.5■■□□□ 1.03
SUPT4H1-203ENST00000579289 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.03
SUPT4H1-203ENST00000579289 FBLN2P98095 1184 aa21.42■■□□□ 1.02
SUPT4H1-203ENST00000579289 TDRD9Q8NDG6 1382 aaKnown RBP21.4■■□□□ 1.02
SUPT4H1-203ENST00000579289 SNAPC4Q5SXM2 1469 aa21.37■■□□□ 1.01
SUPT4H1-203ENST00000579289 SOGA1O94964 1423 aa21.34■■□□□ 1.01
SUPT4H1-203ENST00000579289 WDR97A6NE52 1622 aa21.31■■□□□ 1
SUPT4H1-203ENST00000579289 AEBP2Q6ZN18 517 aaPredicted RBP21.29■■□□□ 1
SUPT4H1-203ENST00000579289 MAGI1Q96QZ7 1491 aaPredicted RBP21.28■■□□□ 1
SUPT4H1-203ENST00000579289 SYNJ1O43426 1573 aa21.27■■□□□ 1
SUPT4H1-203ENST00000579289 FGD5Q6ZNL6 1462 aa21.26■□□□□ 0.99
SUPT4H1-203ENST00000579289 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
SUPT4H1-203ENST00000579289 CUX1P39880 1505 aa21.23■□□□□ 0.99
SUPT4H1-203ENST00000579289 GRIN2BQ13224 1484 aa21.22■□□□□ 0.99
SUPT4H1-203ENST00000579289 GAPVD1Q14C86 1478 aa21.22■□□□□ 0.99
SUPT4H1-203ENST00000579289 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
SUPT4H1-203ENST00000579289 ERCC6L2Q5T890 1561 aa21.15■□□□□ 0.98
SUPT4H1-203ENST00000579289 PBRM1Q86U86 1689 aa21.09■□□□□ 0.97
SUPT4H1-203ENST00000579289 ABCA5Q8WWZ7 1642 aa21.06■□□□□ 0.96
SUPT4H1-203ENST00000579289 ABCA10Q8WWZ4 1543 aa21.03■□□□□ 0.96
SUPT4H1-203ENST00000579289 NUP160Q12769 1436 aa21■□□□□ 0.95
SUPT4H1-203ENST00000579289 CEP170Q5SW79 1584 aa20.99■□□□□ 0.95
SUPT4H1-203ENST00000579289 GRIN2AQ12879 1464 aa20.98■□□□□ 0.95
SUPT4H1-203ENST00000579289 KIF13AQ9H1H9 1805 aa20.97■□□□□ 0.95
SUPT4H1-203ENST00000579289 SHROOM2Q13796 1616 aa20.96■□□□□ 0.95
SUPT4H1-203ENST00000579289 ADAMTS12P58397 1594 aa20.9■□□□□ 0.94
SUPT4H1-203ENST00000579289 FHAD1B1AJZ9 1412 aa20.79■□□□□ 0.92
SUPT4H1-203ENST00000579289 KDM4FA0A1W2PPD8 638 aa20.78■□□□□ 0.92
SUPT4H1-203ENST00000579289 ABCC10Q5T3U5 1492 aa20.77■□□□□ 0.92
SUPT4H1-203ENST00000579289 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
SUPT4H1-203ENST00000579289 PRG4Q92954 1404 aaPredicted RBP20.74■□□□□ 0.91
SUPT4H1-203ENST00000579289 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
SUPT4H1-203ENST00000579289 MAPKBP1O60336 1514 aa20.71■□□□□ 0.91
SUPT4H1-203ENST00000579289 DIP2BQ9P265 1576 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms