RNA–Protein interactions for RNA: ENST00000578875.5

PPP4R1-211, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-211ENST00000578875 NISCHQ9Y2I1 1504 aa20.88■□□□□ 0.93
PPP4R1-211ENST00000578875 ABCC9O60706 1549 aa20■□□□□ 0.79
PPP4R1-211ENST00000578875 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
PPP4R1-211ENST00000578875 CCDC180Q9P1Z9 1646 aa18.89■□□□□ 0.61
PPP4R1-211ENST00000578875 PABPN1Q86U42 306 aaKnown RBP eCLIP18.64■□□□□ 0.57
PPP4R1-211ENST00000578875 DNAJC5Q9H3Z4 198 aa18.56■□□□□ 0.56
PPP4R1-211ENST00000578875 RB1CC1Q8TDY2 1594 aa18.47■□□□□ 0.55
PPP4R1-211ENST00000578875 DCAF8L2P0C7V8 631 aa18.27■□□□□ 0.52
PPP4R1-211ENST00000578875 NACADO15069 1562 aa18.14■□□□□ 0.49
PPP4R1-211ENST00000578875 BICRAQ9NZM4 1560 aa18.08■□□□□ 0.49
PPP4R1-211ENST00000578875 UNC13AQ9UPW8 1703 aa18.07■□□□□ 0.48
PPP4R1-211ENST00000578875 CECR2Q9BXF3 1484 aa18.04■□□□□ 0.48
PPP4R1-211ENST00000578875 CC2D2AQ9P2K1 1620 aa17.92■□□□□ 0.46
PPP4R1-211ENST00000578875 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
PPP4R1-211ENST00000578875 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
PPP4R1-211ENST00000578875 SHROOM4Q9ULL8 1493 aa17.49■□□□□ 0.39
PPP4R1-211ENST00000578875 TRIM41Q8WV44 630 aa17.46■□□□□ 0.39
PPP4R1-211ENST00000578875 CUX2O14529 1486 aa17.39■□□□□ 0.37
PPP4R1-211ENST00000578875 SCRIBQ14160 1630 aa17.35■□□□□ 0.37
PPP4R1-211ENST00000578875 ERCC6Q03468 1493 aa17.23■□□□□ 0.35
PPP4R1-211ENST00000578875 ZCCHC6Q5VYS8 1495 aaKnown RBP17.07■□□□□ 0.32
PPP4R1-211ENST00000578875 DCAF1Q9Y4B6 1507 aa17.06■□□□□ 0.32
PPP4R1-211ENST00000578875 NESP48681 1621 aa16.98■□□□□ 0.31
PPP4R1-211ENST00000578875 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
PPP4R1-211ENST00000578875 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.28
PPP4R1-211ENST00000578875 ATAD2BQ9ULI0 1458 aa16.71■□□□□ 0.27
PPP4R1-211ENST00000578875 SMARCA2P51531 1590 aa16.68■□□□□ 0.26
PPP4R1-211ENST00000578875 OSCARQ8IYS5 282 aa16.66■□□□□ 0.26
PPP4R1-211ENST00000578875 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
PPP4R1-211ENST00000578875 AEBP2Q6ZN18 517 aaPredicted RBP16.53■□□□□ 0.24
PPP4R1-211ENST00000578875 HMGXB3Q12766 1538 aa16.53■□□□□ 0.24
PPP4R1-211ENST00000578875 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
PPP4R1-211ENST00000578875 BAZ1AQ9NRL2 1556 aaPredicted RBP16.5■□□□□ 0.23
PPP4R1-211ENST00000578875 LAMC3Q9Y6N6 1575 aa16.5■□□□□ 0.23
PPP4R1-211ENST00000578875 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
PPP4R1-211ENST00000578875 BAZ1BQ9UIG0 1483 aaKnown RBP16.46■□□□□ 0.23
PPP4R1-211ENST00000578875 RIMBP3CA6NJZ7 1639 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 RIMBP3BA6NNM3 1639 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 RIMBP3Q9UFD9 1639 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 CYB5RLQ6IPT4 315 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 SMARCA4P51532 1647 aa16.41■□□□□ 0.22
PPP4R1-211ENST00000578875 WDR62O43379 1518 aa16.36■□□□□ 0.21
PPP4R1-211ENST00000578875 CADPSQ9ULU8 1353 aa16.35■□□□□ 0.21
PPP4R1-211ENST00000578875 ARHGEF11O15085 1522 aa16.28■□□□□ 0.2
PPP4R1-211ENST00000578875 PEG3Q9GZU2 1588 aa16.19■□□□□ 0.18
PPP4R1-211ENST00000578875 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
PPP4R1-211ENST00000578875 MROH2BQ7Z745 1585 aa16.15■□□□□ 0.18
PPP4R1-211ENST00000578875 FANCD2Q9BXW9 1451 aa16.13■□□□□ 0.17
PPP4R1-211ENST00000578875 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
PPP4R1-211ENST00000578875 URB2Q14146 1524 aaKnown RBP16.09■□□□□ 0.17
PPP4R1-211ENST00000578875 ZNF608Q9ULD9 1512 aaPredicted RBP16.08■□□□□ 0.16
PPP4R1-211ENST00000578875 ILDR1Q86SU0 546 aaPredicted RBP16.05■□□□□ 0.16
PPP4R1-211ENST00000578875 FBLN2P98095 1184 aa15.97■□□□□ 0.15
PPP4R1-211ENST00000578875 CFTRP13569 1480 aa15.94■□□□□ 0.14
PPP4R1-211ENST00000578875 WIZO95785 1651 aa15.89■□□□□ 0.13
PPP4R1-211ENST00000578875 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
PPP4R1-211ENST00000578875 AQRO60306 1485 aaKnown RBP eCLIP15.85■□□□□ 0.137e-12■■□□□ 13.1
PPP4R1-211ENST00000578875 RSF1Q96T23 1441 aaPredicted RBP15.85■□□□□ 0.13
PPP4R1-211ENST00000578875 CHD1O14646 1710 aa15.82■□□□□ 0.12
PPP4R1-211ENST00000578875 EIF4G3O43432 1585 aaKnown RBP15.78■□□□□ 0.12
PPP4R1-211ENST00000578875 TOPBP1Q92547 1522 aa15.73■□□□□ 0.11
PPP4R1-211ENST00000578875 KDM4FA0A1W2PPD8 638 aa15.68■□□□□ 0.1
PPP4R1-211ENST00000578875 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
PPP4R1-211ENST00000578875 CHMP7Q8WUX9 453 aaPredicted RBP15.65■□□□□ 0.1
PPP4R1-211ENST00000578875 CLASP1Q7Z460 1538 aa15.63■□□□□ 0.09
PPP4R1-211ENST00000578875 TARBP1Q13395 1621 aaKnown RBP15.61■□□□□ 0.09
PPP4R1-211ENST00000578875 GAPVD1Q14C86 1478 aa15.61■□□□□ 0.09
PPP4R1-211ENST00000578875 RAD54L2Q9Y4B4 1467 aa15.59■□□□□ 0.09
PPP4R1-211ENST00000578875 SNAPC4Q5SXM2 1469 aa15.56■□□□□ 0.08
PPP4R1-211ENST00000578875 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
PPP4R1-211ENST00000578875 TOP2AP11388 1531 aaKnown RBP15.53■□□□□ 0.08
PPP4R1-211ENST00000578875 DNMBPQ6XZF7 1577 aa15.52■□□□□ 0.07
PPP4R1-211ENST00000578875 POLA1P09884 1462 aaPredicted RBP15.52■□□□□ 0.07
PPP4R1-211ENST00000578875 SOGA1O94964 1423 aa15.51■□□□□ 0.07
PPP4R1-211ENST00000578875 SYNJ1O43426 1573 aa15.5■□□□□ 0.07
PPP4R1-211ENST00000578875 CCDC88BA6NC98 1476 aa15.5■□□□□ 0.07
PPP4R1-211ENST00000578875 ERCC6L2Q5T890 1561 aa15.49■□□□□ 0.07
PPP4R1-211ENST00000578875 PRDM2Q13029 1718 aa15.48■□□□□ 0.07
PPP4R1-211ENST00000578875 FAM69CQ0P6D2 419 aa15.43■□□□□ 0.06
PPP4R1-211ENST00000578875 KIF13AQ9H1H9 1805 aa15.4■□□□□ 0.06
PPP4R1-211ENST00000578875 SYNJ2O15056 1496 aa15.4■□□□□ 0.06
PPP4R1-211ENST00000578875 MAGI1Q96QZ7 1491 aaPredicted RBP15.4■□□□□ 0.06
PPP4R1-211ENST00000578875 GRIN2BQ13224 1484 aa15.36■□□□□ 0.05
PPP4R1-211ENST00000578875 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
PPP4R1-211ENST00000578875 FBXO41Q8TF61 875 aa15.27■□□□□ 0.04
PPP4R1-211ENST00000578875 CEP170Q5SW79 1584 aa15.27■□□□□ 0.03
PPP4R1-211ENST00000578875 ABCC10Q5T3U5 1492 aa15.27■□□□□ 0.03
PPP4R1-211ENST00000578875 KDM6BO15054 1643 aa15.22■□□□□ 0.03
PPP4R1-211ENST00000578875 HECW2Q9P2P5 1572 aa15.22■□□□□ 0.03
PPP4R1-211ENST00000578875 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
PPP4R1-211ENST00000578875 WDR97A6NE52 1622 aa15.21■□□□□ 0.02
PPP4R1-211ENST00000578875 ADGRL1O94910 1474 aa15.19■□□□□ 0.02
PPP4R1-211ENST00000578875 CUX1P39880 1505 aa15.18■□□□□ 0.02
PPP4R1-211ENST00000578875 GRIN2AQ12879 1464 aa15.17■□□□□ 0.02
PPP4R1-211ENST00000578875 NUP160Q12769 1436 aa15.16■□□□□ 0.02
PPP4R1-211ENST00000578875 PRG4Q92954 1404 aaPredicted RBP15.16■□□□□ 0.02
PPP4R1-211ENST00000578875 PBRM1Q86U86 1689 aa15.16■□□□□ 0.02
PPP4R1-211ENST00000578875 JPH4Q96JJ6 628 aa15.15■□□□□ 0.02
PPP4R1-211ENST00000578875 TSPOAP1O95153 1857 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms