RNA–Protein interactions for RNA: ENST00000578547.1

IFT20-207, Transcript of intraflagellar transport 20, humanhuman

TSL 1 (best)

Gene IFT20, Length 962 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT20-207ENST00000578547 NISCHQ9Y2I1 1504 aa28.68■■■□□ 2.18
IFT20-207ENST00000578547 CCDC180Q9P1Z9 1646 aa25.32■■□□□ 1.64
IFT20-207ENST00000578547 ABCC9O60706 1549 aa24.57■■□□□ 1.52
IFT20-207ENST00000578547 ZCCHC6Q5VYS8 1495 aaKnown RBP23.99■■□□□ 1.43
IFT20-207ENST00000578547 DCAF8L2P0C7V8 631 aa23.94■■□□□ 1.42
IFT20-207ENST00000578547 NACADO15069 1562 aa23.74■■□□□ 1.39
IFT20-207ENST00000578547 DCAF1Q9Y4B6 1507 aa23.7■■□□□ 1.38
IFT20-207ENST00000578547 RB1CC1Q8TDY2 1594 aa23.69■■□□□ 1.38
IFT20-207ENST00000578547 MYO15BQ96JP2 1530 aa23.69■■□□□ 1.38
IFT20-207ENST00000578547 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
IFT20-207ENST00000578547 UNC13AQ9UPW8 1703 aa23.13■■□□□ 1.29
IFT20-207ENST00000578547 PABPN1Q86U42 306 aaKnown RBP eCLIP23.07■■□□□ 1.28
IFT20-207ENST00000578547 SHROOM4Q9ULL8 1493 aa23.02■■□□□ 1.28
IFT20-207ENST00000578547 BICRAQ9NZM4 1560 aa23■■□□□ 1.27
IFT20-207ENST00000578547 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
IFT20-207ENST00000578547 CECR2Q9BXF3 1484 aa22.35■■□□□ 1.17
IFT20-207ENST00000578547 EIF4G1Q04637 1599 aaKnown RBP22.35■■□□□ 1.17
IFT20-207ENST00000578547 BAZ1AQ9NRL2 1556 aaPredicted RBP22.21■■□□□ 1.15
IFT20-207ENST00000578547 CC2D2AQ9P2K1 1620 aa22.2■■□□□ 1.14
IFT20-207ENST00000578547 SMARCA4P51532 1647 aa22.19■■□□□ 1.14
IFT20-207ENST00000578547 MROH2BQ7Z745 1585 aa22.14■■□□□ 1.13
IFT20-207ENST00000578547 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
IFT20-207ENST00000578547 ATAD2BQ9ULI0 1458 aa22.01■■□□□ 1.11
IFT20-207ENST00000578547 SMARCA2P51531 1590 aa21.95■■□□□ 1.1
IFT20-207ENST00000578547 WIZO95785 1651 aa21.95■■□□□ 1.1
IFT20-207ENST00000578547 NCAPD3P42695 1498 aa21.94■■□□□ 1.1
IFT20-207ENST00000578547 PEG3Q9GZU2 1588 aa21.92■■□□□ 1.1
IFT20-207ENST00000578547 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
IFT20-207ENST00000578547 BAZ1BQ9UIG0 1483 aaKnown RBP21.82■■□□□ 1.08
IFT20-207ENST00000578547 HMGXB3Q12766 1538 aa21.81■■□□□ 1.08
IFT20-207ENST00000578547 TOP2AP11388 1531 aaKnown RBP21.71■■□□□ 1.07
IFT20-207ENST00000578547 CCDC88BA6NC98 1476 aa21.45■■□□□ 1.02
IFT20-207ENST00000578547 NESP48681 1621 aa21.36■■□□□ 1.01
IFT20-207ENST00000578547 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
IFT20-207ENST00000578547 LAMC3Q9Y6N6 1575 aa21.27■□□□□ 0.99
IFT20-207ENST00000578547 CFTRP13569 1480 aa21.26■□□□□ 0.99
IFT20-207ENST00000578547 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
IFT20-207ENST00000578547 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
IFT20-207ENST00000578547 PRDM2Q13029 1718 aa21.12■□□□□ 0.97
IFT20-207ENST00000578547 FANCD2Q9BXW9 1451 aa21.08■□□□□ 0.97
IFT20-207ENST00000578547 KIF21AQ7Z4S6 1674 aa21.04■□□□□ 0.96
IFT20-207ENST00000578547 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
IFT20-207ENST00000578547 MRC2Q9UBG0 1479 aa20.92■□□□□ 0.94
IFT20-207ENST00000578547 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.94
IFT20-207ENST00000578547 URB2Q14146 1524 aaKnown RBP20.86■□□□□ 0.93
IFT20-207ENST00000578547 ABCC8Q09428 1581 aa20.84■□□□□ 0.93
IFT20-207ENST00000578547 WDR62O43379 1518 aa20.81■□□□□ 0.92
IFT20-207ENST00000578547 TOPBP1Q92547 1522 aa20.77■□□□□ 0.92
IFT20-207ENST00000578547 CUX2O14529 1486 aa20.76■□□□□ 0.91
IFT20-207ENST00000578547 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
IFT20-207ENST00000578547 DNMBPQ6XZF7 1577 aa20.76■□□□□ 0.91
IFT20-207ENST00000578547 CUX1P39880 1505 aa20.75■□□□□ 0.91
IFT20-207ENST00000578547 SYNJ1O43426 1573 aa20.72■□□□□ 0.91
IFT20-207ENST00000578547 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
IFT20-207ENST00000578547 BIVM-ERCC5R4GMW8 1640 aa20.67■□□□□ 0.9
IFT20-207ENST00000578547 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
IFT20-207ENST00000578547 POLA1P09884 1462 aaPredicted RBP20.62■□□□□ 0.89
IFT20-207ENST00000578547 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
IFT20-207ENST00000578547 RAD54L2Q9Y4B4 1467 aa20.56■□□□□ 0.88
IFT20-207ENST00000578547 SOGA1O94964 1423 aa20.56■□□□□ 0.88
IFT20-207ENST00000578547 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
IFT20-207ENST00000578547 IFT140Q96RY7 1462 aa20.56■□□□□ 0.88
IFT20-207ENST00000578547 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
IFT20-207ENST00000578547 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
IFT20-207ENST00000578547 TDRD9Q8NDG6 1382 aaKnown RBP20.44■□□□□ 0.86
IFT20-207ENST00000578547 WDR97A6NE52 1622 aa20.42■□□□□ 0.86
IFT20-207ENST00000578547 AQRO60306 1485 aaKnown RBP eCLIP20.42■□□□□ 0.86
IFT20-207ENST00000578547 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
IFT20-207ENST00000578547 EIF4G3O43432 1585 aaKnown RBP20.36■□□□□ 0.85
IFT20-207ENST00000578547 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
IFT20-207ENST00000578547 GAPVD1Q14C86 1478 aa20.3■□□□□ 0.84
IFT20-207ENST00000578547 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
IFT20-207ENST00000578547 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
IFT20-207ENST00000578547 PBRM1Q86U86 1689 aa20.26■□□□□ 0.83
IFT20-207ENST00000578547 GRIN2BQ13224 1484 aa20.25■□□□□ 0.83
IFT20-207ENST00000578547 FAM9AQ8IZU1 332 aaPredicted RBP20.2■□□□□ 0.82
IFT20-207ENST00000578547 SNAPC4Q5SXM2 1469 aa20.19■□□□□ 0.82
IFT20-207ENST00000578547 IGF1RP08069 1367 aa20.19■□□□□ 0.82
IFT20-207ENST00000578547 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
IFT20-207ENST00000578547 EEA1Q15075 1411 aa20.15■□□□□ 0.82
IFT20-207ENST00000578547 MAGI1Q96QZ7 1491 aaPredicted RBP20.15■□□□□ 0.82
IFT20-207ENST00000578547 FBLN2P98095 1184 aa20.14■□□□□ 0.81
IFT20-207ENST00000578547 AEBP2Q6ZN18 517 aaPredicted RBP20.14■□□□□ 0.81
IFT20-207ENST00000578547 CHMP7Q8WUX9 453 aaPredicted RBP20.11■□□□□ 0.81
IFT20-207ENST00000578547 ADAMTS12P58397 1594 aa20.11■□□□□ 0.81
IFT20-207ENST00000578547 CUL7Q14999 1698 aa20.1■□□□□ 0.81
IFT20-207ENST00000578547 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
IFT20-207ENST00000578547 SYNJ2O15056 1496 aa20.08■□□□□ 0.81
IFT20-207ENST00000578547 CSRNP3Q8WYN3 585 aa20.07■□□□□ 0.8
IFT20-207ENST00000578547 CARMIL1Q5VZK9 1371 aa20.05■□□□□ 0.8
IFT20-207ENST00000578547 OSCARQ8IYS5 282 aa20.04■□□□□ 0.8
IFT20-207ENST00000578547 CHD1O14646 1710 aa20.02■□□□□ 0.8
IFT20-207ENST00000578547 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
IFT20-207ENST00000578547 PRXQ9BXM0 1461 aa19.98■□□□□ 0.79
IFT20-207ENST00000578547 RAPGEF2Q9Y4G8 1499 aa19.97■□□□□ 0.79
IFT20-207ENST00000578547 EHMT2Q96KQ7 1210 aa19.96■□□□□ 0.79
IFT20-207ENST00000578547 KIF21BO75037 1637 aa19.94■□□□□ 0.78
IFT20-207ENST00000578547 NUP160Q12769 1436 aa19.9■□□□□ 0.78
IFT20-207ENST00000578547 CEP170Q5SW79 1584 aa19.87■□□□□ 0.77
IFT20-207ENST00000578547 GOLGA3Q08378 1498 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms