RNA–Protein interactions for RNA: ENST00000576348.1

ERCC4-208, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 2

Gene ERCC4, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-208ENST00000576348 NISCHQ9Y2I1 1504 aa38.23■■■■□ 3.71
ERCC4-208ENST00000576348 CCDC180Q9P1Z9 1646 aa33.57■■■□□ 2.96
ERCC4-208ENST00000576348 ABCC9O60706 1549 aa32.28■■■□□ 2.76
ERCC4-208ENST00000576348 ZCCHC6Q5VYS8 1495 aaKnown RBP32■■■□□ 2.71
ERCC4-208ENST00000576348 DCAF8L2P0C7V8 631 aa31.9■■■□□ 2.7
ERCC4-208ENST00000576348 DCAF1Q9Y4B6 1507 aa31.62■■■□□ 2.65
ERCC4-208ENST00000576348 MYO15BQ96JP2 1530 aa31.45■■■□□ 2.63
ERCC4-208ENST00000576348 NACADO15069 1562 aa31.45■■■□□ 2.63
ERCC4-208ENST00000576348 RB1CC1Q8TDY2 1594 aa31.32■■■□□ 2.6
ERCC4-208ENST00000576348 SHROOM4Q9ULL8 1493 aa30.88■■■□□ 2.53
ERCC4-208ENST00000576348 SCRIBQ14160 1630 aa30.82■■■□□ 2.52
ERCC4-208ENST00000576348 UNC13AQ9UPW8 1703 aa30.41■■■□□ 2.46
ERCC4-208ENST00000576348 PABPN1Q86U42 306 aaKnown RBP eCLIP30.36■■■□□ 2.45
ERCC4-208ENST00000576348 BICRAQ9NZM4 1560 aa30.24■■■□□ 2.43
ERCC4-208ENST00000576348 CECR2Q9BXF3 1484 aa29.71■■■□□ 2.35
ERCC4-208ENST00000576348 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
ERCC4-208ENST00000576348 SUPT5HO00267 1087 aaKnown RBP29.49■■■□□ 2.31
ERCC4-208ENST00000576348 SMARCA4P51532 1647 aa29.49■■■□□ 2.31
ERCC4-208ENST00000576348 MROH2BQ7Z745 1585 aa29.48■■■□□ 2.31
ERCC4-208ENST00000576348 RSF1Q96T23 1441 aaPredicted RBP29.46■■■□□ 2.31
ERCC4-208ENST00000576348 EIF4G1Q04637 1599 aaKnown RBP29.46■■■□□ 2.31
ERCC4-208ENST00000576348 SMARCA2P51531 1590 aa29.18■■■□□ 2.26
ERCC4-208ENST00000576348 WIZO95785 1651 aa29.18■■■□□ 2.26
ERCC4-208ENST00000576348 ATAD2BQ9ULI0 1458 aa29.17■■■□□ 2.26
ERCC4-208ENST00000576348 CC2D2AQ9P2K1 1620 aa29.13■■■□□ 2.25
ERCC4-208ENST00000576348 PEG3Q9GZU2 1588 aa29.12■■■□□ 2.25
ERCC4-208ENST00000576348 BAZ1BQ9UIG0 1483 aaKnown RBP29.04■■■□□ 2.24
ERCC4-208ENST00000576348 NCAPD3P42695 1498 aa29.02■■■□□ 2.24
ERCC4-208ENST00000576348 TOP2AP11388 1531 aaKnown RBP28.95■■■□□ 2.23
ERCC4-208ENST00000576348 HMGXB3Q12766 1538 aa28.93■■■□□ 2.22
ERCC4-208ENST00000576348 DNAJC5BQ9UF47 199 aa28.86■■■□□ 2.21
ERCC4-208ENST00000576348 CCDC88BA6NC98 1476 aa28.63■■■□□ 2.17
ERCC4-208ENST00000576348 CADPSQ9ULU8 1353 aa28.28■■■□□ 2.12
ERCC4-208ENST00000576348 CFTRP13569 1480 aa28.22■■■□□ 2.11
ERCC4-208ENST00000576348 LAMC3Q9Y6N6 1575 aa28.11■■■□□ 2.09
ERCC4-208ENST00000576348 NESP48681 1621 aa28.11■■■□□ 2.09
ERCC4-208ENST00000576348 PDS5BQ9NTI5 1447 aa28.01■■■□□ 2.08
ERCC4-208ENST00000576348 FANCD2Q9BXW9 1451 aa27.95■■■□□ 2.07
ERCC4-208ENST00000576348 PRDM2Q13029 1718 aa27.9■■■□□ 2.06
ERCC4-208ENST00000576348 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
ERCC4-208ENST00000576348 CEP164Q9UPV0 1460 aa27.86■■■□□ 2.05
ERCC4-208ENST00000576348 ERCC6Q03468 1493 aa27.83■■■□□ 2.05
ERCC4-208ENST00000576348 ABCC8Q09428 1581 aa27.82■■■□□ 2.04
ERCC4-208ENST00000576348 WRNQ14191 1432 aaPredicted RBP eCLIP27.81■■■□□ 2.04
ERCC4-208ENST00000576348 TRIM41Q8WV44 630 aa27.8■■■□□ 2.04
ERCC4-208ENST00000576348 KIF21AQ7Z4S6 1674 aa27.71■■■□□ 2.03
ERCC4-208ENST00000576348 MRC2Q9UBG0 1479 aa27.64■■■□□ 2.02
ERCC4-208ENST00000576348 CUX1P39880 1505 aa27.62■■■□□ 2.01
ERCC4-208ENST00000576348 SYNJ1O43426 1573 aa27.6■■■□□ 2.01
ERCC4-208ENST00000576348 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2.01
ERCC4-208ENST00000576348 DNMBPQ6XZF7 1577 aa27.58■■■□□ 2.01
ERCC4-208ENST00000576348 TOP2BQ02880 1626 aa27.56■■■□□ 2
ERCC4-208ENST00000576348 TOPBP1Q92547 1522 aa27.56■■■□□ 2
ERCC4-208ENST00000576348 BIVM-ERCC5R4GMW8 1640 aa27.51■■□□□ 1.99
ERCC4-208ENST00000576348 WDR62O43379 1518 aa27.46■■□□□ 1.99
ERCC4-208ENST00000576348 FGD5Q6ZNL6 1462 aa27.45■■□□□ 1.99
ERCC4-208ENST00000576348 THOC2Q8NI27 1593 aaKnown RBP27.43■■□□□ 1.98
ERCC4-208ENST00000576348 POLA1P09884 1462 aaPredicted RBP27.38■■□□□ 1.97
ERCC4-208ENST00000576348 SOGA1O94964 1423 aa27.34■■□□□ 1.97
ERCC4-208ENST00000576348 RAD54L2Q9Y4B4 1467 aa27.29■■□□□ 1.96
ERCC4-208ENST00000576348 FAM9AQ8IZU1 332 aaPredicted RBP27.25■■□□□ 1.95
ERCC4-208ENST00000576348 IFT140Q96RY7 1462 aa27.24■■□□□ 1.95
ERCC4-208ENST00000576348 CUX2O14529 1486 aa27.22■■□□□ 1.95
ERCC4-208ENST00000576348 KIF27Q86VH2 1401 aa27.2■■□□□ 1.94
ERCC4-208ENST00000576348 ABCA10Q8WWZ4 1543 aa27.19■■□□□ 1.94
ERCC4-208ENST00000576348 EEA1Q15075 1411 aa27.18■■□□□ 1.94
ERCC4-208ENST00000576348 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
ERCC4-208ENST00000576348 TDRD9Q8NDG6 1382 aaKnown RBP27.11■■□□□ 1.93
ERCC4-208ENST00000576348 RUSC2Q8N2Y8 1516 aa27.1■■□□□ 1.93
ERCC4-208ENST00000576348 CSRNP3Q8WYN3 585 aa27.06■■□□□ 1.92
ERCC4-208ENST00000576348 WDR97A6NE52 1622 aa27.03■■□□□ 1.92
ERCC4-208ENST00000576348 GAPVD1Q14C86 1478 aa27.02■■□□□ 1.92
ERCC4-208ENST00000576348 ZNF608Q9ULD9 1512 aaPredicted RBP27■■□□□ 1.91
ERCC4-208ENST00000576348 AQRO60306 1485 aaKnown RBP eCLIP27■■□□□ 1.91
ERCC4-208ENST00000576348 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
ERCC4-208ENST00000576348 IGF1RP08069 1367 aa26.93■■□□□ 1.9
ERCC4-208ENST00000576348 GRIN2BQ13224 1484 aa26.92■■□□□ 1.9
ERCC4-208ENST00000576348 EIF4G3O43432 1585 aaKnown RBP26.9■■□□□ 1.9
ERCC4-208ENST00000576348 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
ERCC4-208ENST00000576348 ERICH3Q5RHP9 1530 aa26.87■■□□□ 1.89
ERCC4-208ENST00000576348 CARMIL1Q5VZK9 1371 aa26.84■■□□□ 1.89
ERCC4-208ENST00000576348 PBRM1Q86U86 1689 aa26.79■■□□□ 1.88
ERCC4-208ENST00000576348 PRXQ9BXM0 1461 aa26.78■■□□□ 1.88
ERCC4-208ENST00000576348 SNAPC4Q5SXM2 1469 aa26.77■■□□□ 1.88
ERCC4-208ENST00000576348 LOC105371045A0A1W2PR82 267 aa26.77■■□□□ 1.88
ERCC4-208ENST00000576348 CUL7Q14999 1698 aa26.76■■□□□ 1.87
ERCC4-208ENST00000576348 GOLGA3Q08378 1498 aa26.75■■□□□ 1.87
ERCC4-208ENST00000576348 KIF21BO75037 1637 aa26.75■■□□□ 1.87
ERCC4-208ENST00000576348 RAPGEF2Q9Y4G8 1499 aa26.74■■□□□ 1.87
ERCC4-208ENST00000576348 FHAD1B1AJZ9 1412 aa26.74■■□□□ 1.87
ERCC4-208ENST00000576348 MAGI1Q96QZ7 1491 aaPredicted RBP26.74■■□□□ 1.87
ERCC4-208ENST00000576348 UBTFP17480 764 aaKnown RBP26.73■■□□□ 1.87
ERCC4-208ENST00000576348 ADAMTS12P58397 1594 aa26.69■■□□□ 1.86
ERCC4-208ENST00000576348 FBLN2P98095 1184 aa26.68■■□□□ 1.86
ERCC4-208ENST00000576348 CHMP7Q8WUX9 453 aaPredicted RBP26.68■■□□□ 1.86
ERCC4-208ENST00000576348 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
ERCC4-208ENST00000576348 TNIKQ9UKE5 1360 aa26.55■■□□□ 1.84
ERCC4-208ENST00000576348 GRIN2AQ12879 1464 aa26.55■■□□□ 1.84
ERCC4-208ENST00000576348 RANGAP1P46060 587 aaPredicted RBP26.44■■□□□ 1.82
ERCC4-208ENST00000576348 NUP160Q12769 1436 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms