RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 NISCHQ9Y2I1 1504 aa19.26■□□□□ 0.67
CCDC40-215ENST00000576033 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
CCDC40-215ENST00000576033 ABCC9O60706 1549 aa16.7■□□□□ 0.26
CCDC40-215ENST00000576033 ZCCHC6Q5VYS8 1495 aaKnown RBP16.1■□□□□ 0.17
CCDC40-215ENST00000576033 RB1CC1Q8TDY2 1594 aa16■□□□□ 0.15
CCDC40-215ENST00000576033 DCAF8L2P0C7V8 631 aa16■□□□□ 0.15
CCDC40-215ENST00000576033 NACADO15069 1562 aa15.97■□□□□ 0.15
CCDC40-215ENST00000576033 DCAF1Q9Y4B6 1507 aa15.86■□□□□ 0.13
CCDC40-215ENST00000576033 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
CCDC40-215ENST00000576033 UNC13AQ9UPW8 1703 aa15.84■□□□□ 0.13
CCDC40-215ENST00000576033 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
CCDC40-215ENST00000576033 BICRAQ9NZM4 1560 aa15.63■□□□□ 0.09
CCDC40-215ENST00000576033 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.08
CCDC40-215ENST00000576033 SHROOM4Q9ULL8 1493 aa15.39■□□□□ 0.05
CCDC40-215ENST00000576033 DNAJC5BQ9UF47 199 aa15.22■□□□□ 0.03
CCDC40-215ENST00000576033 EIF4G1Q04637 1599 aaKnown RBP15.17■□□□□ 0.02
CCDC40-215ENST00000576033 CC2D2AQ9P2K1 1620 aa15.1■□□□□ 0.01
CCDC40-215ENST00000576033 CECR2Q9BXF3 1484 aa15.08■□□□□ 0
CCDC40-215ENST00000576033 SMARCA4P51532 1647 aa14.99□□□□□ -0.01
CCDC40-215ENST00000576033 MROH2BQ7Z745 1585 aa14.92□□□□□ -0.02
CCDC40-215ENST00000576033 BAZ1AQ9NRL2 1556 aaPredicted RBP14.9□□□□□ -0.02
CCDC40-215ENST00000576033 ATAD2BQ9ULI0 1458 aa14.82□□□□□ -0.04
CCDC40-215ENST00000576033 WIZO95785 1651 aa14.81□□□□□ -0.04
CCDC40-215ENST00000576033 PEG3Q9GZU2 1588 aa14.77□□□□□ -0.05
CCDC40-215ENST00000576033 SMARCA2P51531 1590 aa14.76□□□□□ -0.05
CCDC40-215ENST00000576033 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
CCDC40-215ENST00000576033 HMGXB3Q12766 1538 aa14.71□□□□□ -0.05
CCDC40-215ENST00000576033 RSF1Q96T23 1441 aaPredicted RBP14.71□□□□□ -0.05
CCDC40-215ENST00000576033 BAZ1BQ9UIG0 1483 aaKnown RBP14.69□□□□□ -0.06
CCDC40-215ENST00000576033 TOP2AP11388 1531 aaKnown RBP14.57□□□□□ -0.08
CCDC40-215ENST00000576033 NESP48681 1621 aa14.52□□□□□ -0.09
CCDC40-215ENST00000576033 SUPT5HO00267 1087 aaKnown RBP14.41□□□□□ -0.1
CCDC40-215ENST00000576033 CCDC88BA6NC98 1476 aa14.39□□□□□ -0.11
CCDC40-215ENST00000576033 KIF21AQ7Z4S6 1674 aa14.39□□□□□ -0.11
CCDC40-215ENST00000576033 LAMC3Q9Y6N6 1575 aa14.36□□□□□ -0.11
CCDC40-215ENST00000576033 ERCC6Q03468 1493 aa14.31□□□□□ -0.12
CCDC40-215ENST00000576033 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
CCDC40-215ENST00000576033 CADPSQ9ULU8 1353 aa14.29□□□□□ -0.12
CCDC40-215ENST00000576033 THOC2Q8NI27 1593 aaKnown RBP14.28□□□□□ -0.12
CCDC40-215ENST00000576033 CFTRP13569 1480 aa14.27□□□□□ -0.12
CCDC40-215ENST00000576033 FANCD2Q9BXW9 1451 aa14.21□□□□□ -0.13
CCDC40-215ENST00000576033 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
CCDC40-215ENST00000576033 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
CCDC40-215ENST00000576033 MRC2Q9UBG0 1479 aa14.13□□□□□ -0.15
CCDC40-215ENST00000576033 URB2Q14146 1524 aaKnown RBP14.12□□□□□ -0.15
CCDC40-215ENST00000576033 WDR62O43379 1518 aa14.11□□□□□ -0.15
CCDC40-215ENST00000576033 CUX2O14529 1486 aa14.06□□□□□ -0.16
CCDC40-215ENST00000576033 TOPBP1Q92547 1522 aa14.01□□□□□ -0.17
CCDC40-215ENST00000576033 ABCC8Q09428 1581 aa14□□□□□ -0.17
CCDC40-215ENST00000576033 DNMBPQ6XZF7 1577 aa14□□□□□ -0.17
CCDC40-215ENST00000576033 CUX1P39880 1505 aa13.99□□□□□ -0.17
CCDC40-215ENST00000576033 SYNJ1O43426 1573 aa13.95□□□□□ -0.18
CCDC40-215ENST00000576033 POLA1P09884 1462 aaPredicted RBP13.91□□□□□ -0.18
CCDC40-215ENST00000576033 FGD5Q6ZNL6 1462 aa13.9□□□□□ -0.18
CCDC40-215ENST00000576033 TARBP1Q13395 1621 aaKnown RBP13.9□□□□□ -0.19
CCDC40-215ENST00000576033 BIVM-ERCC5R4GMW8 1640 aa13.89□□□□□ -0.19
CCDC40-215ENST00000576033 ZNF608Q9ULD9 1512 aaPredicted RBP13.89□□□□□ -0.19
CCDC40-215ENST00000576033 RAD54L2Q9Y4B4 1467 aa13.88□□□□□ -0.19
CCDC40-215ENST00000576033 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
CCDC40-215ENST00000576033 EIF4G3O43432 1585 aaKnown RBP13.86□□□□□ -0.19
CCDC40-215ENST00000576033 TOP2BQ02880 1626 aa13.86□□□□□ -0.19
CCDC40-215ENST00000576033 WRNQ14191 1432 aaPredicted RBP eCLIP13.84□□□□□ -0.19
CCDC40-215ENST00000576033 IFT140Q96RY7 1462 aa13.82□□□□□ -0.2
CCDC40-215ENST00000576033 AQRO60306 1485 aaKnown RBP eCLIP13.77□□□□□ -0.21
CCDC40-215ENST00000576033 SOGA1O94964 1423 aa13.77□□□□□ -0.21
CCDC40-215ENST00000576033 PBRM1Q86U86 1689 aa13.75□□□□□ -0.21
CCDC40-215ENST00000576033 ABCA5Q8WWZ7 1642 aa13.74□□□□□ -0.21
CCDC40-215ENST00000576033 TDRD9Q8NDG6 1382 aaKnown RBP13.73□□□□□ -0.21
CCDC40-215ENST00000576033 ABCA10Q8WWZ4 1543 aa13.7□□□□□ -0.22
CCDC40-215ENST00000576033 CHD1O14646 1710 aa13.7□□□□□ -0.22
CCDC40-215ENST00000576033 SNAPC4Q5SXM2 1469 aa13.67□□□□□ -0.22
CCDC40-215ENST00000576033 GAPVD1Q14C86 1478 aa13.64□□□□□ -0.23
CCDC40-215ENST00000576033 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
CCDC40-215ENST00000576033 ADAMTS12P58397 1594 aa13.6□□□□□ -0.23
CCDC40-215ENST00000576033 RUSC2Q8N2Y8 1516 aa13.59□□□□□ -0.23
CCDC40-215ENST00000576033 MAGI1Q96QZ7 1491 aaPredicted RBP13.55□□□□□ -0.24
CCDC40-215ENST00000576033 ERICH3Q5RHP9 1530 aa13.54□□□□□ -0.24
CCDC40-215ENST00000576033 SYNJ2O15056 1496 aa13.52□□□□□ -0.25
CCDC40-215ENST00000576033 FBLN2P98095 1184 aa13.51□□□□□ -0.25
CCDC40-215ENST00000576033 TRIM41Q8WV44 630 aa13.51□□□□□ -0.25
CCDC40-215ENST00000576033 CEP170Q5SW79 1584 aa13.49□□□□□ -0.25
CCDC40-215ENST00000576033 KIF27Q86VH2 1401 aa13.49□□□□□ -0.25
CCDC40-215ENST00000576033 GRIN2AQ12879 1464 aa13.48□□□□□ -0.25
CCDC40-215ENST00000576033 DNAJC5Q9H3Z4 198 aa13.48□□□□□ -0.25
CCDC40-215ENST00000576033 CLASP1Q7Z460 1538 aa13.48□□□□□ -0.25
CCDC40-215ENST00000576033 CUL7Q14999 1698 aa13.47□□□□□ -0.25
CCDC40-215ENST00000576033 CHIC1Q5VXU3 224 aa13.47□□□□□ -0.25
CCDC40-215ENST00000576033 FHAD1B1AJZ9 1412 aa13.45□□□□□ -0.26
CCDC40-215ENST00000576033 IGF1RP08069 1367 aa13.45□□□□□ -0.26
CCDC40-215ENST00000576033 CHMP7Q8WUX9 453 aaPredicted RBP13.43□□□□□ -0.26
CCDC40-215ENST00000576033 AEBP2Q6ZN18 517 aaPredicted RBP13.42□□□□□ -0.26
CCDC40-215ENST00000576033 OSCARQ8IYS5 282 aa13.42□□□□□ -0.26
CCDC40-215ENST00000576033 RIMBP3CA6NJZ7 1639 aa13.42□□□□□ -0.26
CCDC40-215ENST00000576033 RIMBP3BA6NNM3 1639 aa13.42□□□□□ -0.26
CCDC40-215ENST00000576033 RIMBP3Q9UFD9 1639 aa13.42□□□□□ -0.26
CCDC40-215ENST00000576033 NUP160Q12769 1436 aa13.39□□□□□ -0.27
CCDC40-215ENST00000576033 ERCC6L2Q5T890 1561 aa13.39□□□□□ -0.27
CCDC40-215ENST00000576033 ARHGEF11O15085 1522 aa13.38□□□□□ -0.27
CCDC40-215ENST00000576033 FAM9AQ8IZU1 332 aaPredicted RBP13.37□□□□□ -0.27
CCDC40-215ENST00000576033 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms