RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
NUP88-211ENST00000575976 CCDC180Q9P1Z9 1646 aa17.95■□□□□ 0.46
NUP88-211ENST00000575976 ABCC9O60706 1549 aa17.54■□□□□ 0.4
NUP88-211ENST00000575976 DNAJC5BQ9UF47 199 aa17.08■□□□□ 0.32
NUP88-211ENST00000575976 ZCCHC6Q5VYS8 1495 aaKnown RBP17■□□□□ 0.31
NUP88-211ENST00000575976 DCAF8L2P0C7V8 631 aa17■□□□□ 0.31
NUP88-211ENST00000575976 NACADO15069 1562 aa16.85■□□□□ 0.29
NUP88-211ENST00000575976 DCAF1Q9Y4B6 1507 aa16.84■□□□□ 0.29
NUP88-211ENST00000575976 RB1CC1Q8TDY2 1594 aa16.82■□□□□ 0.28
NUP88-211ENST00000575976 MYO15BQ96JP2 1530 aa16.82■□□□□ 0.28
NUP88-211ENST00000575976 SCRIBQ14160 1630 aa16.45■□□□□ 0.22
NUP88-211ENST00000575976 UNC13AQ9UPW8 1703 aa16.42■□□□□ 0.22
NUP88-211ENST00000575976 PABPN1Q86U42 306 aaKnown RBP eCLIP16.38■□□□□ 0.21
NUP88-211ENST00000575976 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
NUP88-211ENST00000575976 SHROOM4Q9ULL8 1493 aa16.28■□□□□ 0.2
NUP88-211ENST00000575976 DNAJC5Q9H3Z4 198 aa16.2■□□□□ 0.18
NUP88-211ENST00000575976 CECR2Q9BXF3 1484 aa15.89■□□□□ 0.13
NUP88-211ENST00000575976 EIF4G1Q04637 1599 aaKnown RBP15.87■□□□□ 0.13
NUP88-211ENST00000575976 CC2D2AQ9P2K1 1620 aa15.84■□□□□ 0.13
NUP88-211ENST00000575976 BAZ1AQ9NRL2 1556 aaPredicted RBP15.75■□□□□ 0.11
NUP88-211ENST00000575976 SMARCA4P51532 1647 aa15.74■□□□□ 0.11
NUP88-211ENST00000575976 MROH2BQ7Z745 1585 aa15.72■□□□□ 0.11
NUP88-211ENST00000575976 RSF1Q96T23 1441 aaPredicted RBP15.63■□□□□ 0.09
NUP88-211ENST00000575976 ATAD2BQ9ULI0 1458 aa15.63■□□□□ 0.09
NUP88-211ENST00000575976 NCAPD3P42695 1498 aa15.59■□□□□ 0.09
NUP88-211ENST00000575976 SMARCA2P51531 1590 aa15.58■□□□□ 0.09
NUP88-211ENST00000575976 PEG3Q9GZU2 1588 aa15.57■□□□□ 0.08
NUP88-211ENST00000575976 WIZO95785 1651 aa15.54■□□□□ 0.08
NUP88-211ENST00000575976 BAZ1BQ9UIG0 1483 aaKnown RBP15.5■□□□□ 0.07
NUP88-211ENST00000575976 HMGXB3Q12766 1538 aa15.48■□□□□ 0.07
NUP88-211ENST00000575976 SUPT5HO00267 1087 aaKnown RBP15.44■□□□□ 0.06
NUP88-211ENST00000575976 CUX2O14529 1486 aa15.4■□□□□ 0.06
NUP88-211ENST00000575976 TOP2AP11388 1531 aaKnown RBP15.38■□□□□ 0.05
NUP88-211ENST00000575976 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
NUP88-211ENST00000575976 ERCC6Q03468 1493 aa15.25■□□□□ 0.03
NUP88-211ENST00000575976 CCDC88BA6NC98 1476 aa15.23■□□□□ 0.03
NUP88-211ENST00000575976 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
NUP88-211ENST00000575976 NESP48681 1621 aa15.16■□□□□ 0.02
NUP88-211ENST00000575976 CADPSQ9ULU8 1353 aa15.15■□□□□ 0.02
NUP88-211ENST00000575976 LAMC3Q9Y6N6 1575 aa15.11■□□□□ 0.01
NUP88-211ENST00000575976 CFTRP13569 1480 aa15.09■□□□□ 0.01
NUP88-211ENST00000575976 PDS5BQ9NTI5 1447 aa15.01□□□□□ -0.01
NUP88-211ENST00000575976 FANCD2Q9BXW9 1451 aa14.97□□□□□ -0.01
NUP88-211ENST00000575976 KIF21AQ7Z4S6 1674 aa14.93□□□□□ -0.02
NUP88-211ENST00000575976 CEP164Q9UPV0 1460 aa14.92□□□□□ -0.02
NUP88-211ENST00000575976 PRDM2Q13029 1718 aa14.92□□□□□ -0.02
NUP88-211ENST00000575976 THOC2Q8NI27 1593 aaKnown RBP14.86□□□□□ -0.03
NUP88-211ENST00000575976 MRC2Q9UBG0 1479 aa14.85□□□□□ -0.03
NUP88-211ENST00000575976 URB2Q14146 1524 aaKnown RBP14.81□□□□□ -0.04
NUP88-211ENST00000575976 WDR62O43379 1518 aa14.78□□□□□ -0.04
NUP88-211ENST00000575976 TOPBP1Q92547 1522 aa14.75□□□□□ -0.05
NUP88-211ENST00000575976 ABCC8Q09428 1581 aa14.74□□□□□ -0.05
NUP88-211ENST00000575976 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
NUP88-211ENST00000575976 CUX1P39880 1505 aa14.72□□□□□ -0.05
NUP88-211ENST00000575976 WRNQ14191 1432 aaPredicted RBP eCLIP14.71□□□□□ -0.05
NUP88-211ENST00000575976 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
NUP88-211ENST00000575976 OSCARQ8IYS5 282 aa14.65□□□□□ -0.06
NUP88-211ENST00000575976 POLA1P09884 1462 aaPredicted RBP14.64□□□□□ -0.07
NUP88-211ENST00000575976 FGD5Q6ZNL6 1462 aa14.64□□□□□ -0.07
NUP88-211ENST00000575976 TOP2BQ02880 1626 aa14.63□□□□□ -0.07
NUP88-211ENST00000575976 BIVM-ERCC5R4GMW8 1640 aa14.62□□□□□ -0.07
NUP88-211ENST00000575976 SOGA1O94964 1423 aa14.6□□□□□ -0.07
NUP88-211ENST00000575976 IFT140Q96RY7 1462 aa14.6□□□□□ -0.07
NUP88-211ENST00000575976 RAD54L2Q9Y4B4 1467 aa14.6□□□□□ -0.07
NUP88-211ENST00000575976 TARBP1Q13395 1621 aaKnown RBP14.55□□□□□ -0.08
NUP88-211ENST00000575976 ZNF608Q9ULD9 1512 aaPredicted RBP14.53□□□□□ -0.08
NUP88-211ENST00000575976 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
NUP88-211ENST00000575976 TDRD9Q8NDG6 1382 aaKnown RBP14.5□□□□□ -0.09
NUP88-211ENST00000575976 ABCA10Q8WWZ4 1543 aa14.5□□□□□ -0.09
NUP88-211ENST00000575976 AQRO60306 1485 aaKnown RBP eCLIP14.49□□□□□ -0.09
NUP88-211ENST00000575976 WDR97A6NE52 1622 aa14.47□□□□□ -0.09
NUP88-211ENST00000575976 EIF4G3O43432 1585 aaKnown RBP14.44□□□□□ -0.1
NUP88-211ENST00000575976 RIMBP3CA6NJZ7 1639 aa14.42□□□□□ -0.1
NUP88-211ENST00000575976 RIMBP3BA6NNM3 1639 aa14.42□□□□□ -0.1
NUP88-211ENST00000575976 RIMBP3Q9UFD9 1639 aa14.42□□□□□ -0.1
NUP88-211ENST00000575976 GAPVD1Q14C86 1478 aa14.42□□□□□ -0.1
NUP88-211ENST00000575976 ABCA5Q8WWZ7 1642 aa14.4□□□□□ -0.1
NUP88-211ENST00000575976 KIF27Q86VH2 1401 aa14.39□□□□□ -0.11
NUP88-211ENST00000575976 GRIN2BQ13224 1484 aa14.38□□□□□ -0.11
NUP88-211ENST00000575976 RUSC2Q8N2Y8 1516 aa14.36□□□□□ -0.11
NUP88-211ENST00000575976 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
NUP88-211ENST00000575976 SNAPC4Q5SXM2 1469 aa14.34□□□□□ -0.11
NUP88-211ENST00000575976 PBRM1Q86U86 1689 aa14.33□□□□□ -0.11
NUP88-211ENST00000575976 ARHGEF11O15085 1522 aa14.33□□□□□ -0.12
NUP88-211ENST00000575976 IGF1RP08069 1367 aa14.33□□□□□ -0.12
NUP88-211ENST00000575976 ERICH3Q5RHP9 1530 aa14.31□□□□□ -0.12
NUP88-211ENST00000575976 MAGI1Q96QZ7 1491 aaPredicted RBP14.31□□□□□ -0.12
NUP88-211ENST00000575976 CYB5RLQ6IPT4 315 aa14.3□□□□□ -0.12
NUP88-211ENST00000575976 FBLN2P98095 1184 aa14.29□□□□□ -0.12
NUP88-211ENST00000575976 FAM9AQ8IZU1 332 aaPredicted RBP14.28□□□□□ -0.12
NUP88-211ENST00000575976 CHMP7Q8WUX9 453 aaPredicted RBP14.27□□□□□ -0.13
NUP88-211ENST00000575976 FHAD1B1AJZ9 1412 aa14.26□□□□□ -0.13
NUP88-211ENST00000575976 ADAMTS12P58397 1594 aa14.26□□□□□ -0.13
NUP88-211ENST00000575976 SYNJ2O15056 1496 aa14.25□□□□□ -0.13
NUP88-211ENST00000575976 CSRNP3Q8WYN3 585 aa14.25□□□□□ -0.13
NUP88-211ENST00000575976 EEA1Q15075 1411 aa14.24□□□□□ -0.13
NUP88-211ENST00000575976 CARMIL1Q5VZK9 1371 aa14.24□□□□□ -0.13
NUP88-211ENST00000575976 CHD1O14646 1710 aa14.21□□□□□ -0.13
NUP88-211ENST00000575976 CUL7Q14999 1698 aa14.2□□□□□ -0.14
NUP88-211ENST00000575976 GRIN2AQ12879 1464 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 164.1 ms