RNA–Protein interactions for RNA: ENST00000575426.1

LITAF-217, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 5

Gene LITAF, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-217ENST00000575426 NISCHQ9Y2I1 1504 aa36.54■■■■□ 3.44
LITAF-217ENST00000575426 CCDC180Q9P1Z9 1646 aa32.49■■■□□ 2.79
LITAF-217ENST00000575426 ABCC9O60706 1549 aa31.65■■■□□ 2.66
LITAF-217ENST00000575426 DCAF8L2P0C7V8 631 aa30.61■■■□□ 2.49
LITAF-217ENST00000575426 RB1CC1Q8TDY2 1594 aa30.54■■■□□ 2.48
LITAF-217ENST00000575426 NACADO15069 1562 aa30.5■■■□□ 2.47
LITAF-217ENST00000575426 ZCCHC6Q5VYS8 1495 aaKnown RBP30.44■■■□□ 2.46
LITAF-217ENST00000575426 MYO15BQ96JP2 1530 aa30.31■■■□□ 2.44
LITAF-217ENST00000575426 DCAF1Q9Y4B6 1507 aa30.22■■■□□ 2.43
LITAF-217ENST00000575426 UNC13AQ9UPW8 1703 aa29.88■■■□□ 2.37
LITAF-217ENST00000575426 SCRIBQ14160 1630 aa29.64■■■□□ 2.34
LITAF-217ENST00000575426 PABPN1Q86U42 306 aaKnown RBP eCLIP29.59■■■□□ 2.33
LITAF-217ENST00000575426 BICRAQ9NZM4 1560 aa29.52■■■□□ 2.32
LITAF-217ENST00000575426 SHROOM4Q9ULL8 1493 aa29.24■■■□□ 2.27
LITAF-217ENST00000575426 DNAJC5BQ9UF47 199 aa28.87■■■□□ 2.21
LITAF-217ENST00000575426 EIF4G1Q04637 1599 aaKnown RBP28.76■■■□□ 2.19
LITAF-217ENST00000575426 CC2D2AQ9P2K1 1620 aa28.65■■■□□ 2.18
LITAF-217ENST00000575426 CECR2Q9BXF3 1484 aa28.42■■■□□ 2.14
LITAF-217ENST00000575426 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
LITAF-217ENST00000575426 BAZ1AQ9NRL2 1556 aaPredicted RBP28.35■■■□□ 2.13
LITAF-217ENST00000575426 SMARCA2P51531 1590 aa28.16■■■□□ 2.1
LITAF-217ENST00000575426 MROH2BQ7Z745 1585 aa28.15■■■□□ 2.1
LITAF-217ENST00000575426 ATAD2BQ9ULI0 1458 aa28.13■■■□□ 2.09
LITAF-217ENST00000575426 NCAPD3P42695 1498 aa28.09■■■□□ 2.09
LITAF-217ENST00000575426 PEG3Q9GZU2 1588 aa28.03■■■□□ 2.08
LITAF-217ENST00000575426 HMGXB3Q12766 1538 aa27.98■■■□□ 2.07
LITAF-217ENST00000575426 BAZ1BQ9UIG0 1483 aaKnown RBP27.95■■■□□ 2.07
LITAF-217ENST00000575426 WIZO95785 1651 aa27.91■■■□□ 2.06
LITAF-217ENST00000575426 RSF1Q96T23 1441 aaPredicted RBP27.86■■■□□ 2.05
LITAF-217ENST00000575426 TOP2AP11388 1531 aaKnown RBP27.59■■■□□ 2.01
LITAF-217ENST00000575426 LAMC3Q9Y6N6 1575 aa27.39■■□□□ 1.98
LITAF-217ENST00000575426 NESP48681 1621 aa27.39■■□□□ 1.98
LITAF-217ENST00000575426 SUPT5HO00267 1087 aaKnown RBP27.35■■□□□ 1.97
LITAF-217ENST00000575426 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
LITAF-217ENST00000575426 CADPSQ9ULU8 1353 aa27.31■■□□□ 1.96
LITAF-217ENST00000575426 CCDC88BA6NC98 1476 aa27.25■■□□□ 1.95
LITAF-217ENST00000575426 PDS5BQ9NTI5 1447 aa27.21■■□□□ 1.95
LITAF-217ENST00000575426 KIF21AQ7Z4S6 1674 aa27.14■■□□□ 1.94
LITAF-217ENST00000575426 CFTRP13569 1480 aa27.14■■□□□ 1.94
LITAF-217ENST00000575426 PRDM2Q13029 1718 aa27.09■■□□□ 1.93
LITAF-217ENST00000575426 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
LITAF-217ENST00000575426 CEP164Q9UPV0 1460 aa26.98■■□□□ 1.91
LITAF-217ENST00000575426 THOC2Q8NI27 1593 aaKnown RBP26.96■■□□□ 1.91
LITAF-217ENST00000575426 CUX2O14529 1486 aa26.94■■□□□ 1.9
LITAF-217ENST00000575426 MRC2Q9UBG0 1479 aa26.89■■□□□ 1.9
LITAF-217ENST00000575426 WDR62O43379 1518 aa26.78■■□□□ 1.88
LITAF-217ENST00000575426 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.86
LITAF-217ENST00000575426 ABCC8Q09428 1581 aa26.64■■□□□ 1.86
LITAF-217ENST00000575426 TOPBP1Q92547 1522 aa26.58■■□□□ 1.85
LITAF-217ENST00000575426 DNMBPQ6XZF7 1577 aa26.58■■□□□ 1.85
LITAF-217ENST00000575426 CUX1P39880 1505 aa26.4■■□□□ 1.82
LITAF-217ENST00000575426 IFT140Q96RY7 1462 aa26.39■■□□□ 1.82
LITAF-217ENST00000575426 POLA1P09884 1462 aaPredicted RBP26.34■■□□□ 1.81
LITAF-217ENST00000575426 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
LITAF-217ENST00000575426 WRNQ14191 1432 aaPredicted RBP eCLIP26.31■■□□□ 1.8
LITAF-217ENST00000575426 SOGA1O94964 1423 aa26.29■■□□□ 1.8
LITAF-217ENST00000575426 TARBP1Q13395 1621 aaKnown RBP26.28■■□□□ 1.8
LITAF-217ENST00000575426 BIVM-ERCC5R4GMW8 1640 aa26.26■■□□□ 1.79
LITAF-217ENST00000575426 TOP2BQ02880 1626 aa26.25■■□□□ 1.79
LITAF-217ENST00000575426 RAD54L2Q9Y4B4 1467 aa26.23■■□□□ 1.79
LITAF-217ENST00000575426 ZNF608Q9ULD9 1512 aaPredicted RBP26.23■■□□□ 1.79
LITAF-217ENST00000575426 SYNJ1O43426 1573 aa26.22■■□□□ 1.79
LITAF-217ENST00000575426 EIF4G3O43432 1585 aaKnown RBP26.17■■□□□ 1.78
LITAF-217ENST00000575426 AQRO60306 1485 aaKnown RBP eCLIP26.12■■□□□ 1.772e-8■■■□□ 18.1
LITAF-217ENST00000575426 WDR97A6NE52 1622 aa26.11■■□□□ 1.77
LITAF-217ENST00000575426 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
LITAF-217ENST00000575426 ABCA10Q8WWZ4 1543 aa26.05■■□□□ 1.76
LITAF-217ENST00000575426 GAPVD1Q14C86 1478 aa25.98■■□□□ 1.75
LITAF-217ENST00000575426 PBRM1Q86U86 1689 aa25.97■■□□□ 1.75
LITAF-217ENST00000575426 DNAJC5Q9H3Z4 198 aa25.97■■□□□ 1.75
LITAF-217ENST00000575426 GRIN2BQ13224 1484 aa25.95■■□□□ 1.74
LITAF-217ENST00000575426 ABCA5Q8WWZ7 1642 aa25.95■■□□□ 1.74
LITAF-217ENST00000575426 OSCARQ8IYS5 282 aa25.9■■□□□ 1.74
LITAF-217ENST00000575426 SNAPC4Q5SXM2 1469 aa25.89■■□□□ 1.73
LITAF-217ENST00000575426 CHD1O14646 1710 aa25.88■■□□□ 1.73
LITAF-217ENST00000575426 FBLN2P98095 1184 aa25.87■■□□□ 1.73
LITAF-217ENST00000575426 MAGI1Q96QZ7 1491 aaPredicted RBP25.86■■□□□ 1.73
LITAF-217ENST00000575426 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
LITAF-217ENST00000575426 CHMP7Q8WUX9 453 aaPredicted RBP25.8■■□□□ 1.72
LITAF-217ENST00000575426 ERICH3Q5RHP9 1530 aa25.78■■□□□ 1.72
LITAF-217ENST00000575426 KIF27Q86VH2 1401 aa25.77■■□□□ 1.72
LITAF-217ENST00000575426 SYNJ2O15056 1496 aa25.76■■□□□ 1.71
LITAF-217ENST00000575426 ADAMTS12P58397 1594 aa25.69■■□□□ 1.7
LITAF-217ENST00000575426 FHAD1B1AJZ9 1412 aa25.67■■□□□ 1.7
LITAF-217ENST00000575426 CUL7Q14999 1698 aa25.61■■□□□ 1.69
LITAF-217ENST00000575426 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
LITAF-217ENST00000575426 IGF1RP08069 1367 aa25.6■■□□□ 1.69
LITAF-217ENST00000575426 CHIC1Q5VXU3 224 aa25.54■■□□□ 1.68
LITAF-217ENST00000575426 RUSC2Q8N2Y8 1516 aa25.53■■□□□ 1.68
LITAF-217ENST00000575426 CLASP1Q7Z460 1538 aa25.51■■□□□ 1.67
LITAF-217ENST00000575426 CARMIL1Q5VZK9 1371 aa25.5■■□□□ 1.67
LITAF-217ENST00000575426 CEP170Q5SW79 1584 aa25.46■■□□□ 1.67
LITAF-217ENST00000575426 NUP160Q12769 1436 aa25.46■■□□□ 1.67
LITAF-217ENST00000575426 RIMBP3CA6NJZ7 1639 aa25.44■■□□□ 1.66
LITAF-217ENST00000575426 RIMBP3BA6NNM3 1639 aa25.44■■□□□ 1.66
LITAF-217ENST00000575426 RIMBP3Q9UFD9 1639 aa25.44■■□□□ 1.66
LITAF-217ENST00000575426 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
LITAF-217ENST00000575426 EEA1Q15075 1411 aa25.37■■□□□ 1.65
LITAF-217ENST00000575426 RAPGEF2Q9Y4G8 1499 aa25.36■■□□□ 1.65
LITAF-217ENST00000575426 CSRNP3Q8WYN3 585 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms