RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 NISCHQ9Y2I1 1504 aa34.55■■■■□ 3.12
USP43-204ENST00000573955 CCDC180Q9P1Z9 1646 aa29.69■■■□□ 2.34
USP43-204ENST00000573955 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
USP43-204ENST00000573955 ZCCHC6Q5VYS8 1495 aaKnown RBP29.08■■■□□ 2.25
USP43-204ENST00000573955 SHROOM4Q9ULL8 1493 aa29.03■■■□□ 2.24
USP43-204ENST00000573955 ABCC9O60706 1549 aa28.59■■■□□ 2.17
USP43-204ENST00000573955 DCAF1Q9Y4B6 1507 aa28.32■■■□□ 2.12
USP43-204ENST00000573955 SUPT5HO00267 1087 aaKnown RBP28.14■■■□□ 2.1
USP43-204ENST00000573955 SCRIBQ14160 1630 aa27.82■■■□□ 2.04
USP43-204ENST00000573955 MYO15BQ96JP2 1530 aa27.74■■■□□ 2.03
USP43-204ENST00000573955 NACADO15069 1562 aa27.66■■■□□ 2.02
USP43-204ENST00000573955 RB1CC1Q8TDY2 1594 aa27.49■■□□□ 1.99
USP43-204ENST00000573955 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
USP43-204ENST00000573955 UNC13AQ9UPW8 1703 aa27.12■■□□□ 1.93
USP43-204ENST00000573955 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
USP43-204ENST00000573955 CECR2Q9BXF3 1484 aa27.02■■□□□ 1.92
USP43-204ENST00000573955 CHIC1Q5VXU3 224 aa26.98■■□□□ 1.91
USP43-204ENST00000573955 MROH2BQ7Z745 1585 aa26.84■■□□□ 1.89
USP43-204ENST00000573955 BICRAQ9NZM4 1560 aa26.82■■□□□ 1.88
USP43-204ENST00000573955 WIZO95785 1651 aa26.67■■□□□ 1.86
USP43-204ENST00000573955 BAZ1AQ9NRL2 1556 aaPredicted RBP26.6■■□□□ 1.85
USP43-204ENST00000573955 SMARCA4P51532 1647 aa26.46■■□□□ 1.83
USP43-204ENST00000573955 PELP1Q8IZL8 1130 aaKnown RBP26.46■■□□□ 1.83
USP43-204ENST00000573955 TRIM41Q8WV44 630 aa26.25■■□□□ 1.79
USP43-204ENST00000573955 TOP2AP11388 1531 aaKnown RBP26.23■■□□□ 1.79
USP43-204ENST00000573955 LOC105371045A0A1W2PR82 267 aa26.18■■□□□ 1.78
USP43-204ENST00000573955 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
USP43-204ENST00000573955 SMARCA2P51531 1590 aa26.07■■□□□ 1.76
USP43-204ENST00000573955 FAM9AQ8IZU1 332 aaPredicted RBP26.04■■□□□ 1.76
USP43-204ENST00000573955 ATAD2BQ9ULI0 1458 aa26.01■■□□□ 1.75
USP43-204ENST00000573955 EIF4G1Q04637 1599 aaKnown RBP26■■□□□ 1.75
USP43-204ENST00000573955 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
USP43-204ENST00000573955 BAZ1BQ9UIG0 1483 aaKnown RBP25.9■■□□□ 1.74
USP43-204ENST00000573955 EHMT2Q96KQ7 1210 aa25.88■■□□□ 1.73
USP43-204ENST00000573955 ABCC8Q09428 1581 aa25.84■■□□□ 1.73
USP43-204ENST00000573955 MYT1Q01538 1121 aa25.84■■□□□ 1.73
USP43-204ENST00000573955 CC2D2AQ9P2K1 1620 aa25.66■■□□□ 1.7
USP43-204ENST00000573955 NCAPD3P42695 1498 aa25.62■■□□□ 1.69
USP43-204ENST00000573955 DNAJC5BQ9UF47 199 aa25.53■■□□□ 1.68
USP43-204ENST00000573955 HRCP23327 699 aa25.51■■□□□ 1.67
USP43-204ENST00000573955 HMGXB3Q12766 1538 aa25.51■■□□□ 1.67
USP43-204ENST00000573955 PCGF6Q9BYE7 350 aa25.49■■□□□ 1.67
USP43-204ENST00000573955 WRNQ14191 1432 aaPredicted RBP eCLIP25.48■■□□□ 1.67
USP43-204ENST00000573955 SOGA1O94964 1423 aa25.45■■□□□ 1.66
USP43-204ENST00000573955 SYNJ1O43426 1573 aa25.38■■□□□ 1.65
USP43-204ENST00000573955 RUSC2Q8N2Y8 1516 aa25.36■■□□□ 1.65
USP43-204ENST00000573955 CSRNP3Q8WYN3 585 aa25.24■■□□□ 1.63
USP43-204ENST00000573955 EEA1Q15075 1411 aa25.17■■□□□ 1.62
USP43-204ENST00000573955 NESP48681 1621 aa25.16■■□□□ 1.62
USP43-204ENST00000573955 CFTRP13569 1480 aa25.15■■□□□ 1.62
USP43-204ENST00000573955 UBTFP17480 764 aaKnown RBP25.13■■□□□ 1.61
USP43-204ENST00000573955 TRIM26Q12899 539 aaPredicted RBP25.12■■□□□ 1.61
USP43-204ENST00000573955 CADPSQ9ULU8 1353 aa25.11■■□□□ 1.61
USP43-204ENST00000573955 TOP2BQ02880 1626 aa25.11■■□□□ 1.61
USP43-204ENST00000573955 PPARGC1BQ86YN6 1023 aaKnown RBP25.1■■□□□ 1.61
USP43-204ENST00000573955 CUX1P39880 1505 aa25.03■■□□□ 1.6
USP43-204ENST00000573955 BIVM-ERCC5R4GMW8 1640 aa25.02■■□□□ 1.6
USP43-204ENST00000573955 CEP162Q5TB80 1403 aa25.01■■□□□ 1.6
USP43-204ENST00000573955 GOLGA3Q08378 1498 aa25■■□□□ 1.59
USP43-204ENST00000573955 TNIKQ9UKE5 1360 aa24.99■■□□□ 1.59
USP43-204ENST00000573955 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
USP43-204ENST00000573955 PRDM2Q13029 1718 aa24.92■■□□□ 1.58
USP43-204ENST00000573955 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.58
USP43-204ENST00000573955 KIF21BO75037 1637 aa24.87■■□□□ 1.57
USP43-204ENST00000573955 RAPGEF2Q9Y4G8 1499 aa24.86■■□□□ 1.57
USP43-204ENST00000573955 RANGAP1P46060 587 aaPredicted RBP24.86■■□□□ 1.57
USP43-204ENST00000573955 TTBK1Q5TCY1 1321 aaPredicted RBP24.86■■□□□ 1.57
USP43-204ENST00000573955 KIF27Q86VH2 1401 aa24.75■■□□□ 1.55
USP43-204ENST00000573955 SCAF1Q9H7N4 1312 aaKnown RBP24.72■■□□□ 1.55
USP43-204ENST00000573955 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.55
USP43-204ENST00000573955 CLIP1P30622 1438 aa24.7■■□□□ 1.54
USP43-204ENST00000573955 LAMC3Q9Y6N6 1575 aa24.69■■□□□ 1.54
USP43-204ENST00000573955 CUX2O14529 1486 aa24.68■■□□□ 1.54
USP43-204ENST00000573955 PRXQ9BXM0 1461 aa24.67■■□□□ 1.54
USP43-204ENST00000573955 KIF21AQ7Z4S6 1674 aa24.65■■□□□ 1.54
USP43-204ENST00000573955 RAD54L2Q9Y4B4 1467 aa24.65■■□□□ 1.54
USP43-204ENST00000573955 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
USP43-204ENST00000573955 TOPBP1Q92547 1522 aa24.61■■□□□ 1.53
USP43-204ENST00000573955 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
USP43-204ENST00000573955 ERICH3Q5RHP9 1530 aa24.59■■□□□ 1.53
USP43-204ENST00000573955 DNMBPQ6XZF7 1577 aa24.55■■□□□ 1.52
USP43-204ENST00000573955 POLA1P09884 1462 aaPredicted RBP24.54■■□□□ 1.52
USP43-204ENST00000573955 IGF1RP08069 1367 aa24.53■■□□□ 1.52
USP43-204ENST00000573955 VPS8Q8N3P4 1428 aa24.48■■□□□ 1.51
USP43-204ENST00000573955 TDRD9Q8NDG6 1382 aaKnown RBP24.44■■□□□ 1.5
USP43-204ENST00000573955 CARMIL1Q5VZK9 1371 aa24.43■■□□□ 1.5
USP43-204ENST00000573955 APLP2Q06481 763 aa24.4■■□□□ 1.5
USP43-204ENST00000573955 ERCC6Q03468 1493 aa24.38■■□□□ 1.49
USP43-204ENST00000573955 ABCA10Q8WWZ4 1543 aa24.37■■□□□ 1.49
USP43-204ENST00000573955 ARAP1Q96P48 1450 aa24.37■■□□□ 1.49
USP43-204ENST00000573955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.32■■□□□ 1.48
USP43-204ENST00000573955 MRC2Q9UBG0 1479 aa24.3■■□□□ 1.48
USP43-204ENST00000573955 ARHGAP35Q9NRY4 1499 aa24.27■■□□□ 1.48
USP43-204ENST00000573955 AQRO60306 1485 aaKnown RBP eCLIP24.23■■□□□ 1.47
USP43-204ENST00000573955 ZEB1P37275 1124 aaPredicted RBP24.22■■□□□ 1.47
USP43-204ENST00000573955 WDR97A6NE52 1622 aa24.2■■□□□ 1.47
USP43-204ENST00000573955 CCER1Q8TC90 406 aaPredicted RBP24.2■■□□□ 1.46
USP43-204ENST00000573955 P3H3Q8IVL6 736 aa24.19■■□□□ 1.46
USP43-204ENST00000573955 GAPVD1Q14C86 1478 aa24.17■■□□□ 1.46
USP43-204ENST00000573955 ZNF608Q9ULD9 1512 aaPredicted RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms