RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 NISCHQ9Y2I1 1504 aa38.33■■■■□ 3.73
CHD3-215ENST00000572750 ABCC9O60706 1549 aa34.35■■■■□ 3.09
CHD3-215ENST00000572750 CCDC180Q9P1Z9 1646 aa34.09■■■■□ 3.05
CHD3-215ENST00000572750 DNAJC5BQ9UF47 199 aa33.25■■■□□ 2.91
CHD3-215ENST00000572750 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
CHD3-215ENST00000572750 ZCCHC6Q5VYS8 1495 aaKnown RBP31.99■■■□□ 2.71
CHD3-215ENST00000572750 NACADO15069 1562 aa31.94■■■□□ 2.7
CHD3-215ENST00000572750 DCAF8L2P0C7V8 631 aa31.87■■■□□ 2.69
CHD3-215ENST00000572750 PABPN1Q86U42 306 aaKnown RBP eCLIP31.85■■■□□ 2.69
CHD3-215ENST00000572750 MYO15BQ96JP2 1530 aa31.75■■■□□ 2.67
CHD3-215ENST00000572750 DCAF1Q9Y4B6 1507 aa31.7■■■□□ 2.66
CHD3-215ENST00000572750 UNC13AQ9UPW8 1703 aa31.57■■■□□ 2.64
CHD3-215ENST00000572750 BICRAQ9NZM4 1560 aa31.44■■■□□ 2.62
CHD3-215ENST00000572750 SCRIBQ14160 1630 aa31.16■■■□□ 2.58
CHD3-215ENST00000572750 DNAJC5Q9H3Z4 198 aa31.09■■■□□ 2.57
CHD3-215ENST00000572750 CECR2Q9BXF3 1484 aa31.01■■■□□ 2.55
CHD3-215ENST00000572750 CC2D2AQ9P2K1 1620 aa30.97■■■□□ 2.55
CHD3-215ENST00000572750 SHROOM4Q9ULL8 1493 aa30.68■■■□□ 2.5
CHD3-215ENST00000572750 EIF4G1Q04637 1599 aaKnown RBP30.65■■■□□ 2.5
CHD3-215ENST00000572750 CUX2O14529 1486 aa29.91■■■□□ 2.38
CHD3-215ENST00000572750 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
CHD3-215ENST00000572750 BAZ1AQ9NRL2 1556 aaPredicted RBP29.71■■■□□ 2.35
CHD3-215ENST00000572750 ERCC6Q03468 1493 aa29.61■■■□□ 2.33
CHD3-215ENST00000572750 MROH2BQ7Z745 1585 aa29.57■■■□□ 2.32
CHD3-215ENST00000572750 ATAD2BQ9ULI0 1458 aa29.5■■■□□ 2.31
CHD3-215ENST00000572750 SMARCA2P51531 1590 aa29.49■■■□□ 2.31
CHD3-215ENST00000572750 PEG3Q9GZU2 1588 aa29.44■■■□□ 2.3
CHD3-215ENST00000572750 NCAPD3P42695 1498 aa29.42■■■□□ 2.3
CHD3-215ENST00000572750 HMGXB3Q12766 1538 aa29.38■■■□□ 2.29
CHD3-215ENST00000572750 WIZO95785 1651 aa29.31■■■□□ 2.28
CHD3-215ENST00000572750 NESP48681 1621 aa29.3■■■□□ 2.28
CHD3-215ENST00000572750 BAZ1BQ9UIG0 1483 aaKnown RBP29.29■■■□□ 2.28
CHD3-215ENST00000572750 TRIM41Q8WV44 630 aa29.29■■■□□ 2.28
CHD3-215ENST00000572750 RSF1Q96T23 1441 aaPredicted RBP29.22■■■□□ 2.27
CHD3-215ENST00000572750 THOC2Q8NI27 1593 aaKnown RBP29.14■■■□□ 2.26
CHD3-215ENST00000572750 TOP2AP11388 1531 aaKnown RBP28.97■■■□□ 2.23
CHD3-215ENST00000572750 KIF21AQ7Z4S6 1674 aa28.83■■■□□ 2.21
CHD3-215ENST00000572750 LAMC3Q9Y6N6 1575 aa28.77■■■□□ 2.2
CHD3-215ENST00000572750 PDS5BQ9NTI5 1447 aa28.61■■■□□ 2.17
CHD3-215ENST00000572750 CCDC88BA6NC98 1476 aa28.58■■■□□ 2.17
CHD3-215ENST00000572750 CADPSQ9ULU8 1353 aa28.57■■■□□ 2.16
CHD3-215ENST00000572750 SUPT5HO00267 1087 aaKnown RBP28.55■■■□□ 2.16
CHD3-215ENST00000572750 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
CHD3-215ENST00000572750 WDR62O43379 1518 aa28.48■■■□□ 2.15
CHD3-215ENST00000572750 CFTRP13569 1480 aa28.46■■■□□ 2.15
CHD3-215ENST00000572750 PRDM2Q13029 1718 aa28.42■■■□□ 2.14
CHD3-215ENST00000572750 OSCARQ8IYS5 282 aa28.36■■■□□ 2.13
CHD3-215ENST00000572750 FANCD2Q9BXW9 1451 aa28.3■■■□□ 2.12
CHD3-215ENST00000572750 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
CHD3-215ENST00000572750 RIMBP3CA6NJZ7 1639 aa28.21■■■□□ 2.11
CHD3-215ENST00000572750 RIMBP3BA6NNM3 1639 aa28.21■■■□□ 2.11
CHD3-215ENST00000572750 RIMBP3Q9UFD9 1639 aa28.21■■■□□ 2.11
CHD3-215ENST00000572750 URB2Q14146 1524 aaKnown RBP28.04■■■□□ 2.08
CHD3-215ENST00000572750 ARHGEF11O15085 1522 aa28■■■□□ 2.07
CHD3-215ENST00000572750 DNMBPQ6XZF7 1577 aa27.88■■■□□ 2.05
CHD3-215ENST00000572750 TOPBP1Q92547 1522 aa27.87■■■□□ 2.05
CHD3-215ENST00000572750 CYB5RLQ6IPT4 315 aa27.83■■■□□ 2.05
CHD3-215ENST00000572750 ZNF608Q9ULD9 1512 aaPredicted RBP27.82■■■□□ 2.04
CHD3-215ENST00000572750 ABCC8Q09428 1581 aa27.8■■■□□ 2.04
CHD3-215ENST00000572750 TRHP20396 242 aaPredicted RBP27.76■■■□□ 2.03
CHD3-215ENST00000572750 CUX1P39880 1505 aa27.75■■■□□ 2.03
CHD3-215ENST00000572750 ARAP1Q96P48 1450 aa27.7■■■□□ 2.03
CHD3-215ENST00000572750 POLA1P09884 1462 aaPredicted RBP27.66■■■□□ 2.02
CHD3-215ENST00000572750 IFT140Q96RY7 1462 aa27.64■■■□□ 2.01
CHD3-215ENST00000572750 FGD5Q6ZNL6 1462 aa27.62■■■□□ 2.01
CHD3-215ENST00000572750 TARBP1Q13395 1621 aaKnown RBP27.6■■■□□ 2.01
CHD3-215ENST00000572750 AEBP2Q6ZN18 517 aaPredicted RBP27.6■■■□□ 2.01
CHD3-215ENST00000572750 SYNJ1O43426 1573 aa27.59■■■□□ 2.01
CHD3-215ENST00000572750 BIVM-ERCC5R4GMW8 1640 aa27.56■■■□□ 2
CHD3-215ENST00000572750 WRNQ14191 1432 aaPredicted RBP eCLIP27.56■■■□□ 2
CHD3-215ENST00000572750 TOP2BQ02880 1626 aa27.55■■■□□ 2
CHD3-215ENST00000572750 EIF4G3O43432 1585 aaKnown RBP27.54■■■□□ 2
CHD3-215ENST00000572750 RAD54L2Q9Y4B4 1467 aa27.53■■■□□ 2
CHD3-215ENST00000572750 CHD1O14646 1710 aa27.53■■■□□ 2
CHD3-215ENST00000572750 SOGA1O94964 1423 aa27.48■■□□□ 1.99
CHD3-215ENST00000572750 WDR97A6NE52 1622 aa27.48■■□□□ 1.99
CHD3-215ENST00000572750 AQRO60306 1485 aaKnown RBP eCLIP27.4■■□□□ 1.98
CHD3-215ENST00000572750 ABCA10Q8WWZ4 1543 aa27.32■■□□□ 1.96
CHD3-215ENST00000572750 TDRD9Q8NDG6 1382 aaKnown RBP27.32■■□□□ 1.96
CHD3-215ENST00000572750 FBLN2P98095 1184 aa27.31■■□□□ 1.96
CHD3-215ENST00000572750 ABCA5Q8WWZ7 1642 aa27.29■■□□□ 1.96
CHD3-215ENST00000572750 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
CHD3-215ENST00000572750 CLASP1Q7Z460 1538 aa27.21■■□□□ 1.95
CHD3-215ENST00000572750 GAPVD1Q14C86 1478 aa27.2■■□□□ 1.95
CHD3-215ENST00000572750 SNAPC4Q5SXM2 1469 aa27.18■■□□□ 1.94
CHD3-215ENST00000572750 GRIN2BQ13224 1484 aa27.17■■□□□ 1.94
CHD3-215ENST00000572750 MAGI1Q96QZ7 1491 aaPredicted RBP27.1■■□□□ 1.93
CHD3-215ENST00000572750 ADAMTS12P58397 1594 aa27.03■■□□□ 1.92
CHD3-215ENST00000572750 ERICH3Q5RHP9 1530 aa27■■□□□ 1.91
CHD3-215ENST00000572750 SYNJ2O15056 1496 aa27■■□□□ 1.91
CHD3-215ENST00000572750 KIF27Q86VH2 1401 aa26.95■■□□□ 1.9
CHD3-215ENST00000572750 CHMP7Q8WUX9 453 aaPredicted RBP26.92■■□□□ 1.9
CHD3-215ENST00000572750 FHAD1B1AJZ9 1412 aa26.87■■□□□ 1.89
CHD3-215ENST00000572750 GRIN2AQ12879 1464 aa26.86■■□□□ 1.89
CHD3-215ENST00000572750 CUL7Q14999 1698 aa26.85■■□□□ 1.89
CHD3-215ENST00000572750 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
CHD3-215ENST00000572750 ERCC6L2Q5T890 1561 aa26.8■■□□□ 1.88
CHD3-215ENST00000572750 IGF1RP08069 1367 aa26.78■■□□□ 1.88
CHD3-215ENST00000572750 CEP170Q5SW79 1584 aa26.77■■□□□ 1.88
CHD3-215ENST00000572750 ILDR1Q86SU0 546 aaPredicted RBP26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms