RNA–Protein interactions for RNA: ENST00000572438.1

CHRNE-202, Transcript of cholinergic receptor nicotinic epsilon subunit, humanhuman

TSL 5

Gene CHRNE, Length 1,847 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNE-202ENST00000572438 NISCHQ9Y2I1 1504 aa46.44■■■■■ 5.02
CHRNE-202ENST00000572438 CCDC180Q9P1Z9 1646 aa40.42■■■■■ 4.06
CHRNE-202ENST00000572438 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
CHRNE-202ENST00000572438 DCAF1Q9Y4B6 1507 aa38.4■■■■□ 3.74
CHRNE-202ENST00000572438 DCAF8L2P0C7V8 631 aa38.32■■■■□ 3.72
CHRNE-202ENST00000572438 ABCC9O60706 1549 aa38.25■■■■□ 3.71
CHRNE-202ENST00000572438 MYO15BQ96JP2 1530 aa37.93■■■■□ 3.66
CHRNE-202ENST00000572438 SHROOM4Q9ULL8 1493 aa37.92■■■■□ 3.66
CHRNE-202ENST00000572438 NACADO15069 1562 aa37.66■■■■□ 3.62
CHRNE-202ENST00000572438 RB1CC1Q8TDY2 1594 aa37.32■■■■□ 3.56
CHRNE-202ENST00000572438 SCRIBQ14160 1630 aa37.2■■■■□ 3.55
CHRNE-202ENST00000572438 SUPT5HO00267 1087 aaKnown RBP36.53■■■■□ 3.44
CHRNE-202ENST00000572438 UNC13AQ9UPW8 1703 aa36.5■■■■□ 3.43
CHRNE-202ENST00000572438 BICRAQ9NZM4 1560 aa36.18■■■■□ 3.38
CHRNE-202ENST00000572438 CECR2Q9BXF3 1484 aa36.08■■■■□ 3.37
CHRNE-202ENST00000572438 RSF1Q96T23 1441 aaPredicted RBP36.06■■■■□ 3.36
CHRNE-202ENST00000572438 PABPN1Q86U42 306 aaKnown RBP eCLIP36.04■■■■□ 3.36
CHRNE-202ENST00000572438 MROH2BQ7Z745 1585 aa35.87■■■■□ 3.33
CHRNE-202ENST00000572438 BAZ1AQ9NRL2 1556 aaPredicted RBP35.85■■■■□ 3.33
CHRNE-202ENST00000572438 SMARCA4P51532 1647 aa35.66■■■■□ 3.3
CHRNE-202ENST00000572438 WIZO95785 1651 aa35.56■■■■□ 3.28
CHRNE-202ENST00000572438 PEG3Q9GZU2 1588 aa35.24■■■■□ 3.23
CHRNE-202ENST00000572438 TOP2AP11388 1531 aaKnown RBP35.22■■■■□ 3.23
CHRNE-202ENST00000572438 EIF4G1Q04637 1599 aaKnown RBP35.09■■■■□ 3.21
CHRNE-202ENST00000572438 ATAD2BQ9ULI0 1458 aa35.09■■■■□ 3.21
CHRNE-202ENST00000572438 SMARCA2P51531 1590 aa35.06■■■■□ 3.2
CHRNE-202ENST00000572438 CHIC1Q5VXU3 224 aa35.02■■■■□ 3.2
CHRNE-202ENST00000572438 BAZ1BQ9UIG0 1483 aaKnown RBP34.89■■■■□ 3.18
CHRNE-202ENST00000572438 CCDC88BA6NC98 1476 aa34.87■■■■□ 3.17
CHRNE-202ENST00000572438 NCAPD3P42695 1498 aa34.78■■■■□ 3.16
CHRNE-202ENST00000572438 HMGXB3Q12766 1538 aa34.72■■■■□ 3.15
CHRNE-202ENST00000572438 CC2D2AQ9P2K1 1620 aa34.61■■■■□ 3.13
CHRNE-202ENST00000572438 DNAJC5BQ9UF47 199 aa34.55■■■■□ 3.12
CHRNE-202ENST00000572438 TRIM41Q8WV44 630 aa34.35■■■■□ 3.09
CHRNE-202ENST00000572438 ABCC8Q09428 1581 aa34.14■■■■□ 3.06
CHRNE-202ENST00000572438 CFTRP13569 1480 aa34.02■■■■□ 3.04
CHRNE-202ENST00000572438 WRNQ14191 1432 aaPredicted RBP eCLIP33.94■■■■□ 3.02
CHRNE-202ENST00000572438 CADPSQ9ULU8 1353 aa33.89■■■■□ 3.02
CHRNE-202ENST00000572438 SYNJ1O43426 1573 aa33.78■■■■□ 3
CHRNE-202ENST00000572438 PRDM2Q13029 1718 aa33.77■■■■□ 3
CHRNE-202ENST00000572438 FAM9AQ8IZU1 332 aaPredicted RBP33.71■■■□□ 2.99
CHRNE-202ENST00000572438 LOC105371045A0A1W2PR82 267 aa33.67■■■□□ 2.98
CHRNE-202ENST00000572438 TOP2BQ02880 1626 aa33.63■■■□□ 2.97
CHRNE-202ENST00000572438 BIVM-ERCC5R4GMW8 1640 aa33.59■■■□□ 2.97
CHRNE-202ENST00000572438 LAMC3Q9Y6N6 1575 aa33.56■■■□□ 2.96
CHRNE-202ENST00000572438 NESP48681 1621 aa33.55■■■□□ 2.96
CHRNE-202ENST00000572438 CUX1P39880 1505 aa33.54■■■□□ 2.96
CHRNE-202ENST00000572438 SOGA1O94964 1423 aa33.54■■■□□ 2.96
CHRNE-202ENST00000572438 FANCD2Q9BXW9 1451 aa33.52■■■□□ 2.96
CHRNE-202ENST00000572438 EEA1Q15075 1411 aa33.5■■■□□ 2.95
CHRNE-202ENST00000572438 RUSC2Q8N2Y8 1516 aa33.39■■■□□ 2.94
CHRNE-202ENST00000572438 PDS5BQ9NTI5 1447 aa33.32■■■□□ 2.93
CHRNE-202ENST00000572438 CSRNP3Q8WYN3 585 aa33.31■■■□□ 2.92
CHRNE-202ENST00000572438 CEP164Q9UPV0 1460 aa33.29■■■□□ 2.92
CHRNE-202ENST00000572438 EHMT2Q96KQ7 1210 aa33.22■■■□□ 2.91
CHRNE-202ENST00000572438 DNMBPQ6XZF7 1577 aa33.22■■■□□ 2.91
CHRNE-202ENST00000572438 FGD5Q6ZNL6 1462 aa33.17■■■□□ 2.9
CHRNE-202ENST00000572438 TOPBP1Q92547 1522 aa33.15■■■□□ 2.9
CHRNE-202ENST00000572438 KIF21AQ7Z4S6 1674 aa33.1■■■□□ 2.89
CHRNE-202ENST00000572438 URB2Q14146 1524 aaKnown RBP33.09■■■□□ 2.89
CHRNE-202ENST00000572438 KIF27Q86VH2 1401 aa33.08■■■□□ 2.89
CHRNE-202ENST00000572438 KIF21BO75037 1637 aa33.04■■■□□ 2.88
CHRNE-202ENST00000572438 GOLGA3Q08378 1498 aa33.03■■■□□ 2.88
CHRNE-202ENST00000572438 POLA1P09884 1462 aaPredicted RBP33■■■□□ 2.87
CHRNE-202ENST00000572438 CUX2O14529 1486 aa32.97■■■□□ 2.87
CHRNE-202ENST00000572438 TNIKQ9UKE5 1360 aa32.95■■■□□ 2.87
CHRNE-202ENST00000572438 RAD54L2Q9Y4B4 1467 aa32.89■■■□□ 2.86
CHRNE-202ENST00000572438 ABCA10Q8WWZ4 1543 aa32.88■■■□□ 2.85
CHRNE-202ENST00000572438 MRC2Q9UBG0 1479 aa32.88■■■□□ 2.85
CHRNE-202ENST00000572438 UBTFP17480 764 aaKnown RBP32.88■■■□□ 2.85
CHRNE-202ENST00000572438 ERCC6Q03468 1493 aa32.88■■■□□ 2.85
CHRNE-202ENST00000572438 PRXQ9BXM0 1461 aa32.88■■■□□ 2.85
CHRNE-202ENST00000572438 RAPGEF2Q9Y4G8 1499 aa32.85■■■□□ 2.85
CHRNE-202ENST00000572438 ERICH3Q5RHP9 1530 aa32.81■■■□□ 2.84
CHRNE-202ENST00000572438 IGF1RP08069 1367 aa32.79■■■□□ 2.84
CHRNE-202ENST00000572438 CEP162Q5TB80 1403 aa32.77■■■□□ 2.84
CHRNE-202ENST00000572438 WDR97A6NE52 1622 aa32.72■■■□□ 2.83
CHRNE-202ENST00000572438 WDR62O43379 1518 aa32.7■■■□□ 2.83
CHRNE-202ENST00000572438 TARBP1Q13395 1621 aaKnown RBP32.64■■■□□ 2.82
CHRNE-202ENST00000572438 THOC2Q8NI27 1593 aaKnown RBP32.63■■■□□ 2.81
CHRNE-202ENST00000572438 CARMIL1Q5VZK9 1371 aa32.61■■■□□ 2.81
CHRNE-202ENST00000572438 ABCA5Q8WWZ7 1642 aa32.59■■■□□ 2.81
CHRNE-202ENST00000572438 TDRD9Q8NDG6 1382 aaKnown RBP32.58■■■□□ 2.81
CHRNE-202ENST00000572438 GAPVD1Q14C86 1478 aa32.53■■■□□ 2.8
CHRNE-202ENST00000572438 CLIP1P30622 1438 aa32.5■■■□□ 2.79
CHRNE-202ENST00000572438 IFT140Q96RY7 1462 aa32.5■■■□□ 2.79
CHRNE-202ENST00000572438 CUL7Q14999 1698 aa32.49■■■□□ 2.79
CHRNE-202ENST00000572438 AQRO60306 1485 aaKnown RBP eCLIP32.35■■■□□ 2.77
CHRNE-202ENST00000572438 RANGAP1P46060 587 aaPredicted RBP32.31■■■□□ 2.76
CHRNE-202ENST00000572438 ZNF608Q9ULD9 1512 aaPredicted RBP32.31■■■□□ 2.76
CHRNE-202ENST00000572438 PBRM1Q86U86 1689 aa32.3■■■□□ 2.76
CHRNE-202ENST00000572438 GRIN2BQ13224 1484 aa32.28■■■□□ 2.76
CHRNE-202ENST00000572438 VPS8Q8N3P4 1428 aa32.24■■■□□ 2.75
CHRNE-202ENST00000572438 FHAD1B1AJZ9 1412 aa32.2■■■□□ 2.74
CHRNE-202ENST00000572438 TRIM26Q12899 539 aaPredicted RBP32.19■■■□□ 2.74
CHRNE-202ENST00000572438 EIF4G3O43432 1585 aaKnown RBP32.19■■■□□ 2.74
CHRNE-202ENST00000572438 PCGF6Q9BYE7 350 aa32.19■■■□□ 2.74
CHRNE-202ENST00000572438 ARAP1Q96P48 1450 aa32.18■■■□□ 2.74
CHRNE-202ENST00000572438 ADAMTS12P58397 1594 aa32.17■■■□□ 2.74
CHRNE-202ENST00000572438 ARHGAP35Q9NRY4 1499 aa32.15■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms