RNA–Protein interactions for RNA: ENST00000572351.1

NPLOC4-208, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 5

Gene NPLOC4, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-208ENST00000572351 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
NPLOC4-208ENST00000572351 CCDC180Q9P1Z9 1646 aa19.53■□□□□ 0.72
NPLOC4-208ENST00000572351 AEBP2Q6ZN18 517 aaPredicted RBP19.21■□□□□ 0.67
NPLOC4-208ENST00000572351 ABCC9O60706 1549 aa18.99■□□□□ 0.63
NPLOC4-208ENST00000572351 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
NPLOC4-208ENST00000572351 DCAF8L2P0C7V8 631 aa18.61■□□□□ 0.57
NPLOC4-208ENST00000572351 ZCCHC6Q5VYS8 1495 aaKnown RBP18.56■□□□□ 0.56
NPLOC4-208ENST00000572351 NACADO15069 1562 aa18.37■□□□□ 0.53
NPLOC4-208ENST00000572351 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
NPLOC4-208ENST00000572351 RB1CC1Q8TDY2 1594 aa18.33■□□□□ 0.52
NPLOC4-208ENST00000572351 MYO15BQ96JP2 1530 aa18.33■□□□□ 0.52
NPLOC4-208ENST00000572351 SCRIBQ14160 1630 aa17.94■□□□□ 0.46
NPLOC4-208ENST00000572351 PABPN1Q86U42 306 aaKnown RBP eCLIP17.84■□□□□ 0.45
NPLOC4-208ENST00000572351 SHROOM4Q9ULL8 1493 aa17.83■□□□□ 0.45
NPLOC4-208ENST00000572351 UNC13AQ9UPW8 1703 aa17.73■□□□□ 0.43
NPLOC4-208ENST00000572351 BICRAQ9NZM4 1560 aa17.7■□□□□ 0.42
NPLOC4-208ENST00000572351 CECR2Q9BXF3 1484 aa17.28■□□□□ 0.36
NPLOC4-208ENST00000572351 EIF4G1Q04637 1599 aaKnown RBP17.27■□□□□ 0.35
NPLOC4-208ENST00000572351 BAZ1AQ9NRL2 1556 aaPredicted RBP17.2■□□□□ 0.34
NPLOC4-208ENST00000572351 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
NPLOC4-208ENST00000572351 SMARCA4P51532 1647 aa17.14■□□□□ 0.33
NPLOC4-208ENST00000572351 MROH2BQ7Z745 1585 aa17.12■□□□□ 0.33
NPLOC4-208ENST00000572351 CC2D2AQ9P2K1 1620 aa17.11■□□□□ 0.33
NPLOC4-208ENST00000572351 RSF1Q96T23 1441 aaPredicted RBP17.05■□□□□ 0.32
NPLOC4-208ENST00000572351 ATAD2BQ9ULI0 1458 aa17.03■□□□□ 0.32
NPLOC4-208ENST00000572351 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
NPLOC4-208ENST00000572351 NCAPD3P42695 1498 aa16.97■□□□□ 0.31
NPLOC4-208ENST00000572351 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
NPLOC4-208ENST00000572351 SUPT5HO00267 1087 aaKnown RBP16.94■□□□□ 0.3
NPLOC4-208ENST00000572351 BAZ1BQ9UIG0 1483 aaKnown RBP16.93■□□□□ 0.3
NPLOC4-208ENST00000572351 WIZO95785 1651 aa16.91■□□□□ 0.3
NPLOC4-208ENST00000572351 HMGXB3Q12766 1538 aa16.88■□□□□ 0.29
NPLOC4-208ENST00000572351 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
NPLOC4-208ENST00000572351 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
NPLOC4-208ENST00000572351 PHF23Q9BUL5 403 aaPredicted RBP16.59■□□□□ 0.25
NPLOC4-208ENST00000572351 CADPSQ9ULU8 1353 aa16.52■□□□□ 0.24
NPLOC4-208ENST00000572351 NESP48681 1621 aa16.47■□□□□ 0.23
NPLOC4-208ENST00000572351 CFTRP13569 1480 aa16.46■□□□□ 0.23
NPLOC4-208ENST00000572351 LAMC3Q9Y6N6 1575 aa16.45■□□□□ 0.22
NPLOC4-208ENST00000572351 PDS5BQ9NTI5 1447 aa16.41■□□□□ 0.22
NPLOC4-208ENST00000572351 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
NPLOC4-208ENST00000572351 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.2
NPLOC4-208ENST00000572351 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
NPLOC4-208ENST00000572351 SENP3Q9H4L4 574 aaPredicted RBP16.2■□□□□ 0.18
NPLOC4-208ENST00000572351 MRC2Q9UBG0 1479 aa16.2■□□□□ 0.18
NPLOC4-208ENST00000572351 KIF21AQ7Z4S6 1674 aa16.19■□□□□ 0.18
NPLOC4-208ENST00000572351 PRDM2Q13029 1718 aa16.18■□□□□ 0.18
NPLOC4-208ENST00000572351 URB2Q14146 1524 aaKnown RBP16.11■□□□□ 0.17
NPLOC4-208ENST00000572351 WRNQ14191 1432 aaPredicted RBP eCLIP16.11■□□□□ 0.17
NPLOC4-208ENST00000572351 ABCC8Q09428 1581 aa16.1■□□□□ 0.17
NPLOC4-208ENST00000572351 THOC2Q8NI27 1593 aaKnown RBP16.1■□□□□ 0.17
NPLOC4-208ENST00000572351 WDR62O43379 1518 aa16.09■□□□□ 0.17
NPLOC4-208ENST00000572351 TOPBP1Q92547 1522 aa16.07■□□□□ 0.16
NPLOC4-208ENST00000572351 DNMBPQ6XZF7 1577 aa16.06■□□□□ 0.16
NPLOC4-208ENST00000572351 CUX1P39880 1505 aa16.04■□□□□ 0.16
NPLOC4-208ENST00000572351 CUX2O14529 1486 aa16.03■□□□□ 0.16
NPLOC4-208ENST00000572351 TRIM41Q8WV44 630 aa16■□□□□ 0.15
NPLOC4-208ENST00000572351 SYNJ1O43426 1573 aa15.98■□□□□ 0.15
NPLOC4-208ENST00000572351 FGD5Q6ZNL6 1462 aa15.97■□□□□ 0.15
NPLOC4-208ENST00000572351 POLA1P09884 1462 aaPredicted RBP15.97■□□□□ 0.15
NPLOC4-208ENST00000572351 TOP2BQ02880 1626 aa15.96■□□□□ 0.15
NPLOC4-208ENST00000572351 SOGA1O94964 1423 aa15.94■□□□□ 0.14
NPLOC4-208ENST00000572351 IFT140Q96RY7 1462 aa15.93■□□□□ 0.14
NPLOC4-208ENST00000572351 RAD54L2Q9Y4B4 1467 aa15.91■□□□□ 0.14
NPLOC4-208ENST00000572351 BIVM-ERCC5R4GMW8 1640 aa15.91■□□□□ 0.14
NPLOC4-208ENST00000572351 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
NPLOC4-208ENST00000572351 ABCA10Q8WWZ4 1543 aa15.82■□□□□ 0.12
NPLOC4-208ENST00000572351 ZNF608Q9ULD9 1512 aaPredicted RBP15.82■□□□□ 0.12
NPLOC4-208ENST00000572351 TARBP1Q13395 1621 aaKnown RBP15.81■□□□□ 0.12
NPLOC4-208ENST00000572351 AQRO60306 1485 aaKnown RBP eCLIP15.79■□□□□ 0.124e-9■■■■■ 31.7
NPLOC4-208ENST00000572351 KIF27Q86VH2 1401 aa15.77■□□□□ 0.11
NPLOC4-208ENST00000572351 GAPVD1Q14C86 1478 aa15.75■□□□□ 0.11
NPLOC4-208ENST00000572351 EIF4G3O43432 1585 aaKnown RBP15.73■□□□□ 0.11
NPLOC4-208ENST00000572351 WDR97A6NE52 1622 aa15.72■□□□□ 0.11
NPLOC4-208ENST00000572351 GRIN2BQ13224 1484 aa15.71■□□□□ 0.1
NPLOC4-208ENST00000572351 ABCA5Q8WWZ7 1642 aa15.68■□□□□ 0.1
NPLOC4-208ENST00000572351 FAM9AQ8IZU1 332 aaPredicted RBP15.67■□□□□ 0.1
NPLOC4-208ENST00000572351 SNAPC4Q5SXM2 1469 aa15.65■□□□□ 0.1
NPLOC4-208ENST00000572351 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
NPLOC4-208ENST00000572351 FBLN2P98095 1184 aa15.64■□□□□ 0.09
NPLOC4-208ENST00000572351 IGF1RP08069 1367 aa15.63■□□□□ 0.09
NPLOC4-208ENST00000572351 EEA1Q15075 1411 aa15.63■□□□□ 0.09
NPLOC4-208ENST00000572351 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
NPLOC4-208ENST00000572351 MAGI1Q96QZ7 1491 aaPredicted RBP15.62■□□□□ 0.09
NPLOC4-208ENST00000572351 CHMP7Q8WUX9 453 aaPredicted RBP15.61■□□□□ 0.09
NPLOC4-208ENST00000572351 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
NPLOC4-208ENST00000572351 FHAD1B1AJZ9 1412 aa15.58■□□□□ 0.08
NPLOC4-208ENST00000572351 PBRM1Q86U86 1689 aa15.57■□□□□ 0.08
NPLOC4-208ENST00000572351 CARMIL1Q5VZK9 1371 aa15.57■□□□□ 0.08
NPLOC4-208ENST00000572351 SYNJ2O15056 1496 aa15.56■□□□□ 0.08
NPLOC4-208ENST00000572351 ADAMTS12P58397 1594 aa15.54■□□□□ 0.08
NPLOC4-208ENST00000572351 CUL7Q14999 1698 aa15.51■□□□□ 0.07
NPLOC4-208ENST00000572351 GRIN2AQ12879 1464 aa15.5■□□□□ 0.07
NPLOC4-208ENST00000572351 RAPGEF2Q9Y4G8 1499 aa15.49■□□□□ 0.07
NPLOC4-208ENST00000572351 OSCARQ8IYS5 282 aa15.49■□□□□ 0.07
NPLOC4-208ENST00000572351 PRXQ9BXM0 1461 aa15.48■□□□□ 0.07
NPLOC4-208ENST00000572351 EHMT2Q96KQ7 1210 aa15.47■□□□□ 0.07
NPLOC4-208ENST00000572351 CHD1O14646 1710 aa15.4■□□□□ 0.06
NPLOC4-208ENST00000572351 UBTFP17480 764 aaKnown RBP15.4■□□□□ 0.06
NPLOC4-208ENST00000572351 NUP160Q12769 1436 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms