RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 NISCHQ9Y2I1 1504 aa18.36■□□□□ 0.53
CHD3-213ENST00000571249 ABCC9O60706 1549 aa18.01■□□□□ 0.47
CHD3-213ENST00000571249 DNAJC5BQ9UF47 199 aa17.97■□□□□ 0.47
CHD3-213ENST00000571249 DNAJC5Q9H3Z4 198 aa17.13■□□□□ 0.33
CHD3-213ENST00000571249 CCDC180Q9P1Z9 1646 aa16.75■□□□□ 0.27
CHD3-213ENST00000571249 PABPN1Q86U42 306 aaKnown RBP eCLIP16.72■□□□□ 0.27
CHD3-213ENST00000571249 RB1CC1Q8TDY2 1594 aa16.51■□□□□ 0.23
CHD3-213ENST00000571249 CECR2Q9BXF3 1484 aa16.29■□□□□ 0.2
CHD3-213ENST00000571249 BICRAQ9NZM4 1560 aa16.18■□□□□ 0.18
CHD3-213ENST00000571249 NACADO15069 1562 aa16.16■□□□□ 0.18
CHD3-213ENST00000571249 UNC13AQ9UPW8 1703 aa16.16■□□□□ 0.18
CHD3-213ENST00000571249 DCAF8L2P0C7V8 631 aa16.15■□□□□ 0.18
CHD3-213ENST00000571249 CC2D2AQ9P2K1 1620 aa16.13■□□□□ 0.17
CHD3-213ENST00000571249 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
CHD3-213ENST00000571249 EIF4G1Q04637 1599 aaKnown RBP15.83■□□□□ 0.12
CHD3-213ENST00000571249 CUX2O14529 1486 aa15.79■□□□□ 0.12
CHD3-213ENST00000571249 SHROOM4Q9ULL8 1493 aa15.65■□□□□ 0.1
CHD3-213ENST00000571249 ERCC6Q03468 1493 aa15.55■□□□□ 0.08
CHD3-213ENST00000571249 MYO15BQ96JP2 1530 aa15.54■□□□□ 0.08
CHD3-213ENST00000571249 CHIC1Q5VXU3 224 aa15.44■□□□□ 0.06
CHD3-213ENST00000571249 SCRIBQ14160 1630 aa15.39■□□□□ 0.05
CHD3-213ENST00000571249 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
CHD3-213ENST00000571249 NESP48681 1621 aa15.21■□□□□ 0.02
CHD3-213ENST00000571249 THOC2Q8NI27 1593 aaKnown RBP15.11■□□□□ 0.01
CHD3-213ENST00000571249 OSCARQ8IYS5 282 aa15.04■□□□□ -0
CHD3-213ENST00000571249 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
CHD3-213ENST00000571249 DCAF1Q9Y4B6 1507 aa14.99□□□□□ -0.01
CHD3-213ENST00000571249 SMARCA2P51531 1590 aa14.98□□□□□ -0.01
CHD3-213ENST00000571249 TRHP20396 242 aaPredicted RBP14.97□□□□□ -0.01
CHD3-213ENST00000571249 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.01
CHD3-213ENST00000571249 BAZ1AQ9NRL2 1556 aaPredicted RBP14.91□□□□□ -0.02
CHD3-213ENST00000571249 RIMBP3CA6NJZ7 1639 aa14.88□□□□□ -0.03
CHD3-213ENST00000571249 RIMBP3BA6NNM3 1639 aa14.88□□□□□ -0.03
CHD3-213ENST00000571249 RIMBP3Q9UFD9 1639 aa14.88□□□□□ -0.03
CHD3-213ENST00000571249 ILDR1Q86SU0 546 aaPredicted RBP14.88□□□□□ -0.03
CHD3-213ENST00000571249 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
CHD3-213ENST00000571249 ATAD2BQ9ULI0 1458 aa14.84□□□□□ -0.03
CHD3-213ENST00000571249 CYB5RLQ6IPT4 315 aa14.84□□□□□ -0.03
CHD3-213ENST00000571249 PDS5BQ9NTI5 1447 aa14.75□□□□□ -0.05
CHD3-213ENST00000571249 LAMC3Q9Y6N6 1575 aa14.74□□□□□ -0.05
CHD3-213ENST00000571249 ARHGEF11O15085 1522 aa14.74□□□□□ -0.05
CHD3-213ENST00000571249 HMGXB3Q12766 1538 aa14.71□□□□□ -0.06
CHD3-213ENST00000571249 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
CHD3-213ENST00000571249 WDR62O43379 1518 aa14.66□□□□□ -0.06
CHD3-213ENST00000571249 BAZ1BQ9UIG0 1483 aaKnown RBP14.6□□□□□ -0.07
CHD3-213ENST00000571249 ARAP1Q96P48 1450 aa14.55□□□□□ -0.08
CHD3-213ENST00000571249 CADPSQ9ULU8 1353 aa14.53□□□□□ -0.08
CHD3-213ENST00000571249 SMARCA4P51532 1647 aa14.5□□□□□ -0.09
CHD3-213ENST00000571249 CEP164Q9UPV0 1460 aa14.42□□□□□ -0.1
CHD3-213ENST00000571249 ZNF608Q9ULD9 1512 aaPredicted RBP14.36□□□□□ -0.11
CHD3-213ENST00000571249 FANCD2Q9BXW9 1451 aa14.35□□□□□ -0.11
CHD3-213ENST00000571249 URB2Q14146 1524 aaKnown RBP14.33□□□□□ -0.12
CHD3-213ENST00000571249 PEG3Q9GZU2 1588 aa14.32□□□□□ -0.12
CHD3-213ENST00000571249 KDM4FA0A1W2PPD8 638 aa14.27□□□□□ -0.13
CHD3-213ENST00000571249 FBLN2P98095 1184 aa14.27□□□□□ -0.13
CHD3-213ENST00000571249 RSF1Q96T23 1441 aaPredicted RBP14.26□□□□□ -0.13
CHD3-213ENST00000571249 CHD1O14646 1710 aa14.19□□□□□ -0.14
CHD3-213ENST00000571249 MROH2BQ7Z745 1585 aa14.19□□□□□ -0.14
CHD3-213ENST00000571249 IFT140Q96RY7 1462 aa14.17□□□□□ -0.14
CHD3-213ENST00000571249 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
CHD3-213ENST00000571249 CFTRP13569 1480 aa14.12□□□□□ -0.15
CHD3-213ENST00000571249 EIF4G3O43432 1585 aaKnown RBP14.1□□□□□ -0.15
CHD3-213ENST00000571249 FBXO41Q8TF61 875 aa14.03□□□□□ -0.16
CHD3-213ENST00000571249 CLASP1Q7Z460 1538 aa14.02□□□□□ -0.16
CHD3-213ENST00000571249 GAPVD1Q14C86 1478 aa14.01□□□□□ -0.17
CHD3-213ENST00000571249 LMTK3Q96Q04 1460 aa13.97□□□□□ -0.17
CHD3-213ENST00000571249 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
CHD3-213ENST00000571249 WIZO95785 1651 aa13.95□□□□□ -0.18
CHD3-213ENST00000571249 ILDR2Q71H61 639 aa13.94□□□□□ -0.18
CHD3-213ENST00000571249 CHMP7Q8WUX9 453 aaPredicted RBP13.93□□□□□ -0.18
CHD3-213ENST00000571249 SOCS7O14512 581 aa13.92□□□□□ -0.18
CHD3-213ENST00000571249 HECW2Q9P2P5 1572 aa13.91□□□□□ -0.18
CHD3-213ENST00000571249 ERCC6L2Q5T890 1561 aa13.9□□□□□ -0.18
CHD3-213ENST00000571249 KIF13AQ9H1H9 1805 aa13.9□□□□□ -0.18
CHD3-213ENST00000571249 TDRD9Q8NDG6 1382 aaKnown RBP13.89□□□□□ -0.19
CHD3-213ENST00000571249 TARBP1Q13395 1621 aaKnown RBP13.89□□□□□ -0.19
CHD3-213ENST00000571249 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
CHD3-213ENST00000571249 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
CHD3-213ENST00000571249 FAM69CQ0P6D2 419 aa13.86□□□□□ -0.19
CHD3-213ENST00000571249 RAD54L2Q9Y4B4 1467 aa13.81□□□□□ -0.2
CHD3-213ENST00000571249 SYNJ2O15056 1496 aa13.8□□□□□ -0.2
CHD3-213ENST00000571249 ADGRL1O94910 1474 aa13.79□□□□□ -0.2
CHD3-213ENST00000571249 ABCC8Q09428 1581 aa13.76□□□□□ -0.21
CHD3-213ENST00000571249 POLA1P09884 1462 aaPredicted RBP13.76□□□□□ -0.21
CHD3-213ENST00000571249 KDM6BO15054 1643 aa13.75□□□□□ -0.21
CHD3-213ENST00000571249 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
CHD3-213ENST00000571249 ABCC10Q5T3U5 1492 aa13.73□□□□□ -0.21
CHD3-213ENST00000571249 SOGA1O94964 1423 aa13.72□□□□□ -0.21
CHD3-213ENST00000571249 DISP3Q9P2K9 1392 aa13.71□□□□□ -0.21
CHD3-213ENST00000571249 PRDM2Q13029 1718 aa13.71□□□□□ -0.21
CHD3-213ENST00000571249 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.21
CHD3-213ENST00000571249 GRIN2BQ13224 1484 aa13.65□□□□□ -0.22
CHD3-213ENST00000571249 PHF23Q9BUL5 403 aaPredicted RBP13.63□□□□□ -0.23
CHD3-213ENST00000571249 TOP2AP11388 1531 aaKnown RBP13.63□□□□□ -0.23
CHD3-213ENST00000571249 CEP170Q5SW79 1584 aa13.62□□□□□ -0.23
CHD3-213ENST00000571249 TSPOAP1O95153 1857 aa13.62□□□□□ -0.23
CHD3-213ENST00000571249 DIP2BQ9P265 1576 aa13.62□□□□□ -0.23
CHD3-213ENST00000571249 CCDC88BA6NC98 1476 aa13.59□□□□□ -0.23
CHD3-213ENST00000571249 NPM1P06748 294 aaKnown RBP eCLIP13.58□□□□□ -0.24
CHD3-213ENST00000571249 FGD5Q6ZNL6 1462 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms