RNA–Protein interactions for RNA: ENST00000570688.1

ABR-208, Transcript of ABR, RhoGEF and GTPase activating protein, humanhuman

TSL 2

Gene ABR, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABR-208ENST00000570688 NISCHQ9Y2I1 1504 aa27.15■■□□□ 1.94
ABR-208ENST00000570688 CCDC180Q9P1Z9 1646 aa24.02■■□□□ 1.44
ABR-208ENST00000570688 ABCC9O60706 1549 aa23.38■■□□□ 1.33
ABR-208ENST00000570688 ZCCHC6Q5VYS8 1495 aaKnown RBP22.66■■□□□ 1.22
ABR-208ENST00000570688 NACADO15069 1562 aa22.5■■□□□ 1.19
ABR-208ENST00000570688 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
ABR-208ENST00000570688 RB1CC1Q8TDY2 1594 aa22.47■■□□□ 1.19
ABR-208ENST00000570688 MYO15BQ96JP2 1530 aa22.44■■□□□ 1.18
ABR-208ENST00000570688 DCAF1Q9Y4B6 1507 aa22.42■■□□□ 1.18
ABR-208ENST00000570688 UNC13AQ9UPW8 1703 aa22.16■■□□□ 1.14
ABR-208ENST00000570688 BICRAQ9NZM4 1560 aa21.98■■□□□ 1.11
ABR-208ENST00000570688 SCRIBQ14160 1630 aa21.98■■□□□ 1.11
ABR-208ENST00000570688 PABPN1Q86U42 306 aaKnown RBP eCLIP21.88■■□□□ 1.09
ABR-208ENST00000570688 SHROOM4Q9ULL8 1493 aa21.55■■□□□ 1.04
ABR-208ENST00000570688 DNAJC5BQ9UF47 199 aa21.45■■□□□ 1.02
ABR-208ENST00000570688 EIF4G1Q04637 1599 aaKnown RBP21.28■■□□□ 1
ABR-208ENST00000570688 CECR2Q9BXF3 1484 aa21.22■□□□□ 0.99
ABR-208ENST00000570688 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
ABR-208ENST00000570688 SMARCA4P51532 1647 aa21.04■□□□□ 0.96
ABR-208ENST00000570688 MROH2BQ7Z745 1585 aa20.99■□□□□ 0.95
ABR-208ENST00000570688 BAZ1AQ9NRL2 1556 aaPredicted RBP20.96■□□□□ 0.95
ABR-208ENST00000570688 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
ABR-208ENST00000570688 PEG3Q9GZU2 1588 aa20.83■□□□□ 0.92
ABR-208ENST00000570688 NCAPD3P42695 1498 aa20.81■□□□□ 0.92
ABR-208ENST00000570688 RSF1Q96T23 1441 aaPredicted RBP20.78■□□□□ 0.92
ABR-208ENST00000570688 WIZO95785 1651 aa20.77■□□□□ 0.91
ABR-208ENST00000570688 SMARCA2P51531 1590 aa20.76■□□□□ 0.91
ABR-208ENST00000570688 HMGXB3Q12766 1538 aa20.71■□□□□ 0.91
ABR-208ENST00000570688 BAZ1BQ9UIG0 1483 aaKnown RBP20.64■□□□□ 0.89
ABR-208ENST00000570688 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
ABR-208ENST00000570688 NESP48681 1621 aa20.36■□□□□ 0.85
ABR-208ENST00000570688 SUPT5HO00267 1087 aaKnown RBP20.28■□□□□ 0.84
ABR-208ENST00000570688 CCDC88BA6NC98 1476 aa20.27■□□□□ 0.84
ABR-208ENST00000570688 LAMC3Q9Y6N6 1575 aa20.19■□□□□ 0.82
ABR-208ENST00000570688 CADPSQ9ULU8 1353 aa20.19■□□□□ 0.82
ABR-208ENST00000570688 CFTRP13569 1480 aa20.14■□□□□ 0.81
ABR-208ENST00000570688 KIF21AQ7Z4S6 1674 aa20.1■□□□□ 0.81
ABR-208ENST00000570688 ERCC6Q03468 1493 aa20.01■□□□□ 0.79
ABR-208ENST00000570688 PRDM2Q13029 1718 aa20■□□□□ 0.79
ABR-208ENST00000570688 PDS5BQ9NTI5 1447 aa19.99■□□□□ 0.79
ABR-208ENST00000570688 THOC2Q8NI27 1593 aaKnown RBP19.99■□□□□ 0.79
ABR-208ENST00000570688 FANCD2Q9BXW9 1451 aa19.97■□□□□ 0.79
ABR-208ENST00000570688 CEP164Q9UPV0 1460 aa19.89■□□□□ 0.77
ABR-208ENST00000570688 MRC2Q9UBG0 1479 aa19.85■□□□□ 0.77
ABR-208ENST00000570688 URB2Q14146 1524 aaKnown RBP19.84■□□□□ 0.77
ABR-208ENST00000570688 WDR62O43379 1518 aa19.81■□□□□ 0.76
ABR-208ENST00000570688 CUX2O14529 1486 aa19.78■□□□□ 0.76
ABR-208ENST00000570688 TOPBP1Q92547 1522 aa19.7■□□□□ 0.74
ABR-208ENST00000570688 CUX1P39880 1505 aa19.66■□□□□ 0.74
ABR-208ENST00000570688 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
ABR-208ENST00000570688 ABCC8Q09428 1581 aa19.62■□□□□ 0.73
ABR-208ENST00000570688 POLA1P09884 1462 aaPredicted RBP19.55■□□□□ 0.72
ABR-208ENST00000570688 SYNJ1O43426 1573 aa19.55■□□□□ 0.72
ABR-208ENST00000570688 FGD5Q6ZNL6 1462 aa19.52■□□□□ 0.72
ABR-208ENST00000570688 TARBP1Q13395 1621 aaKnown RBP19.51■□□□□ 0.71
ABR-208ENST00000570688 WRNQ14191 1432 aaPredicted RBP eCLIP19.51■□□□□ 0.71
ABR-208ENST00000570688 RAD54L2Q9Y4B4 1467 aa19.5■□□□□ 0.71
ABR-208ENST00000570688 BIVM-ERCC5R4GMW8 1640 aa19.5■□□□□ 0.71
ABR-208ENST00000570688 ZNF608Q9ULD9 1512 aaPredicted RBP19.49■□□□□ 0.71
ABR-208ENST00000570688 TOP2BQ02880 1626 aa19.48■□□□□ 0.71
ABR-208ENST00000570688 IFT140Q96RY7 1462 aa19.46■□□□□ 0.71
ABR-208ENST00000570688 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
ABR-208ENST00000570688 SOGA1O94964 1423 aa19.41■□□□□ 0.7
ABR-208ENST00000570688 EIF4G3O43432 1585 aaKnown RBP19.37■□□□□ 0.69
ABR-208ENST00000570688 AQRO60306 1485 aaKnown RBP eCLIP19.36■□□□□ 0.69
ABR-208ENST00000570688 TDRD9Q8NDG6 1382 aaKnown RBP19.33■□□□□ 0.69
ABR-208ENST00000570688 ABCA10Q8WWZ4 1543 aa19.32■□□□□ 0.68
ABR-208ENST00000570688 ABCA5Q8WWZ7 1642 aa19.27■□□□□ 0.68
ABR-208ENST00000570688 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
ABR-208ENST00000570688 PBRM1Q86U86 1689 aa19.2■□□□□ 0.66
ABR-208ENST00000570688 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
ABR-208ENST00000570688 SNAPC4Q5SXM2 1469 aa19.16■□□□□ 0.66
ABR-208ENST00000570688 RUSC2Q8N2Y8 1516 aa19.12■□□□□ 0.65
ABR-208ENST00000570688 CHD1O14646 1710 aa19.11■□□□□ 0.65
ABR-208ENST00000570688 CHIC1Q5VXU3 224 aa19.1■□□□□ 0.65
ABR-208ENST00000570688 MAGI1Q96QZ7 1491 aaPredicted RBP19.08■□□□□ 0.64
ABR-208ENST00000570688 TRIM41Q8WV44 630 aa19.07■□□□□ 0.64
ABR-208ENST00000570688 ADAMTS12P58397 1594 aa19.06■□□□□ 0.64
ABR-208ENST00000570688 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
ABR-208ENST00000570688 IGF1RP08069 1367 aa19.04■□□□□ 0.64
ABR-208ENST00000570688 KIF27Q86VH2 1401 aa19.03■□□□□ 0.64
ABR-208ENST00000570688 DNAJC5Q9H3Z4 198 aa19.02■□□□□ 0.64
ABR-208ENST00000570688 SYNJ2O15056 1496 aa19.02■□□□□ 0.63
ABR-208ENST00000570688 FBLN2P98095 1184 aa18.96■□□□□ 0.63
ABR-208ENST00000570688 FHAD1B1AJZ9 1412 aa18.96■□□□□ 0.63
ABR-208ENST00000570688 OSCARQ8IYS5 282 aa18.95■□□□□ 0.62
ABR-208ENST00000570688 GRIN2AQ12879 1464 aa18.95■□□□□ 0.62
ABR-208ENST00000570688 CHMP7Q8WUX9 453 aaPredicted RBP18.92■□□□□ 0.62
ABR-208ENST00000570688 CLASP1Q7Z460 1538 aa18.91■□□□□ 0.62
ABR-208ENST00000570688 CEP170Q5SW79 1584 aa18.91■□□□□ 0.62
ABR-208ENST00000570688 CUL7Q14999 1698 aa18.9■□□□□ 0.62
ABR-208ENST00000570688 NUP160Q12769 1436 aa18.88■□□□□ 0.61
ABR-208ENST00000570688 CARMIL1Q5VZK9 1371 aa18.87■□□□□ 0.61
ABR-208ENST00000570688 PRXQ9BXM0 1461 aa18.82■□□□□ 0.6
ABR-208ENST00000570688 RAPGEF2Q9Y4G8 1499 aa18.77■□□□□ 0.59
ABR-208ENST00000570688 RIMBP3CA6NJZ7 1639 aa18.76■□□□□ 0.59
ABR-208ENST00000570688 RIMBP3BA6NNM3 1639 aa18.76■□□□□ 0.59
ABR-208ENST00000570688 RIMBP3Q9UFD9 1639 aa18.76■□□□□ 0.59
ABR-208ENST00000570688 FAM9AQ8IZU1 332 aaPredicted RBP18.76■□□□□ 0.59
ABR-208ENST00000570688 ERCC6L2Q5T890 1561 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms