RNA–Protein interactions for RNA: ENST00000570659.5

SMG6-205, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 592 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-205ENST00000570659 NISCHQ9Y2I1 1504 aa19.05■□□□□ 0.64
SMG6-205ENST00000570659 ABCC9O60706 1549 aa17.77■□□□□ 0.44
SMG6-205ENST00000570659 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
SMG6-205ENST00000570659 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
SMG6-205ENST00000570659 RB1CC1Q8TDY2 1594 aa16.56■□□□□ 0.24
SMG6-205ENST00000570659 PABPN1Q86U42 306 aaKnown RBP eCLIP16.5■□□□□ 0.23
SMG6-205ENST00000570659 UNC13AQ9UPW8 1703 aa16.4■□□□□ 0.22
SMG6-205ENST00000570659 NACADO15069 1562 aa16.34■□□□□ 0.21
SMG6-205ENST00000570659 BICRAQ9NZM4 1560 aa16.32■□□□□ 0.2
SMG6-205ENST00000570659 DCAF8L2P0C7V8 631 aa16.2■□□□□ 0.18
SMG6-205ENST00000570659 CC2D2AQ9P2K1 1620 aa16.01■□□□□ 0.15
SMG6-205ENST00000570659 CECR2Q9BXF3 1484 aa15.98■□□□□ 0.15
SMG6-205ENST00000570659 MYO15BQ96JP2 1530 aa15.94■□□□□ 0.14
SMG6-205ENST00000570659 DNAJC5Q9H3Z4 198 aa15.9■□□□□ 0.14
SMG6-205ENST00000570659 EIF4G1Q04637 1599 aaKnown RBP15.84■□□□□ 0.13
SMG6-205ENST00000570659 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
SMG6-205ENST00000570659 SHROOM4Q9ULL8 1493 aa15.73■□□□□ 0.11
SMG6-205ENST00000570659 ZCCHC6Q5VYS8 1495 aaKnown RBP15.71■□□□□ 0.1
SMG6-205ENST00000570659 DCAF1Q9Y4B6 1507 aa15.6■□□□□ 0.09
SMG6-205ENST00000570659 CUX2O14529 1486 aa15.33■□□□□ 0.05
SMG6-205ENST00000570659 ERCC6Q03468 1493 aa15.22■□□□□ 0.03
SMG6-205ENST00000570659 NESP48681 1621 aa15.22■□□□□ 0.03
SMG6-205ENST00000570659 NCAPD3P42695 1498 aa15.14■□□□□ 0.01
SMG6-205ENST00000570659 THOC2Q8NI27 1593 aaKnown RBP15.09■□□□□ 0.01
SMG6-205ENST00000570659 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0.01
SMG6-205ENST00000570659 TRIM41Q8WV44 630 aa15.05■□□□□ -0
SMG6-205ENST00000570659 HMGXB3Q12766 1538 aa14.97□□□□□ -0.01
SMG6-205ENST00000570659 SMARCA4P51532 1647 aa14.97□□□□□ -0.01
SMG6-205ENST00000570659 SMARCA2P51531 1590 aa14.96□□□□□ -0.01
SMG6-205ENST00000570659 KIF21AQ7Z4S6 1674 aa14.96□□□□□ -0.01
SMG6-205ENST00000570659 BAZ1BQ9UIG0 1483 aaKnown RBP14.85□□□□□ -0.03
SMG6-205ENST00000570659 LAMC3Q9Y6N6 1575 aa14.82□□□□□ -0.04
SMG6-205ENST00000570659 PEG3Q9GZU2 1588 aa14.78□□□□□ -0.04
SMG6-205ENST00000570659 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
SMG6-205ENST00000570659 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
SMG6-205ENST00000570659 WDR62O43379 1518 aa14.71□□□□□ -0.05
SMG6-205ENST00000570659 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
SMG6-205ENST00000570659 PDS5BQ9NTI5 1447 aa14.69□□□□□ -0.06
SMG6-205ENST00000570659 CADPSQ9ULU8 1353 aa14.64□□□□□ -0.07
SMG6-205ENST00000570659 WIZO95785 1651 aa14.57□□□□□ -0.08
SMG6-205ENST00000570659 RIMBP3CA6NJZ7 1639 aa14.56□□□□□ -0.08
SMG6-205ENST00000570659 RIMBP3BA6NNM3 1639 aa14.56□□□□□ -0.08
SMG6-205ENST00000570659 RIMBP3Q9UFD9 1639 aa14.56□□□□□ -0.08
SMG6-205ENST00000570659 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
SMG6-205ENST00000570659 URB2Q14146 1524 aaKnown RBP14.52□□□□□ -0.08
SMG6-205ENST00000570659 CEP164Q9UPV0 1460 aa14.52□□□□□ -0.08
SMG6-205ENST00000570659 FANCD2Q9BXW9 1451 aa14.51□□□□□ -0.09
SMG6-205ENST00000570659 ARHGEF11O15085 1522 aa14.44□□□□□ -0.1
SMG6-205ENST00000570659 ZNF608Q9ULD9 1512 aaPredicted RBP14.44□□□□□ -0.1
SMG6-205ENST00000570659 CFTRP13569 1480 aa14.42□□□□□ -0.1
SMG6-205ENST00000570659 ARAP1Q96P48 1450 aa14.32□□□□□ -0.12
SMG6-205ENST00000570659 CYB5RLQ6IPT4 315 aa14.32□□□□□ -0.12
SMG6-205ENST00000570659 CHD1O14646 1710 aa14.27□□□□□ -0.12
SMG6-205ENST00000570659 EIF4G3O43432 1585 aaKnown RBP14.27□□□□□ -0.12
SMG6-205ENST00000570659 TOP2AP11388 1531 aaKnown RBP14.25□□□□□ -0.13
SMG6-205ENST00000570659 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
SMG6-205ENST00000570659 TRHP20396 242 aaPredicted RBP14.23□□□□□ -0.13
SMG6-205ENST00000570659 IFT140Q96RY7 1462 aa14.23□□□□□ -0.13
SMG6-205ENST00000570659 TOPBP1Q92547 1522 aa14.22□□□□□ -0.13
SMG6-205ENST00000570659 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
SMG6-205ENST00000570659 AQRO60306 1485 aaKnown RBP eCLIP14.2□□□□□ -0.143e-6■■■■□ 24
SMG6-205ENST00000570659 TARBP1Q13395 1621 aaKnown RBP14.18□□□□□ -0.14
SMG6-205ENST00000570659 CCDC88BA6NC98 1476 aa14.14□□□□□ -0.15
SMG6-205ENST00000570659 DNMBPQ6XZF7 1577 aa14.09□□□□□ -0.15
SMG6-205ENST00000570659 RAD54L2Q9Y4B4 1467 aa14.08□□□□□ -0.16
SMG6-205ENST00000570659 CLASP1Q7Z460 1538 aa14.08□□□□□ -0.16
SMG6-205ENST00000570659 FBLN2P98095 1184 aa14.07□□□□□ -0.16
SMG6-205ENST00000570659 POLA1P09884 1462 aaPredicted RBP14.06□□□□□ -0.16
SMG6-205ENST00000570659 AEBP2Q6ZN18 517 aaPredicted RBP14.03□□□□□ -0.16
SMG6-205ENST00000570659 TDRD9Q8NDG6 1382 aaKnown RBP14.03□□□□□ -0.16
SMG6-205ENST00000570659 SNAPC4Q5SXM2 1469 aa14.01□□□□□ -0.17
SMG6-205ENST00000570659 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.17
SMG6-205ENST00000570659 ABCC8Q09428 1581 aa13.95□□□□□ -0.18
SMG6-205ENST00000570659 SOGA1O94964 1423 aa13.91□□□□□ -0.18
SMG6-205ENST00000570659 FGD5Q6ZNL6 1462 aa13.91□□□□□ -0.18
SMG6-205ENST00000570659 GAPVD1Q14C86 1478 aa13.9□□□□□ -0.18
SMG6-205ENST00000570659 SYNJ1O43426 1573 aa13.89□□□□□ -0.19
SMG6-205ENST00000570659 CUX1P39880 1505 aa13.88□□□□□ -0.19
SMG6-205ENST00000570659 WDR97A6NE52 1622 aa13.87□□□□□ -0.19
SMG6-205ENST00000570659 MAGI1Q96QZ7 1491 aaPredicted RBP13.85□□□□□ -0.19
SMG6-205ENST00000570659 CHMP7Q8WUX9 453 aaPredicted RBP13.84□□□□□ -0.19
SMG6-205ENST00000570659 SYNJ2O15056 1496 aa13.84□□□□□ -0.19
SMG6-205ENST00000570659 PBRM1Q86U86 1689 aa13.82□□□□□ -0.2
SMG6-205ENST00000570659 GRIN2BQ13224 1484 aa13.82□□□□□ -0.2
SMG6-205ENST00000570659 KIF13AQ9H1H9 1805 aa13.81□□□□□ -0.2
SMG6-205ENST00000570659 ABCA5Q8WWZ7 1642 aa13.75□□□□□ -0.21
SMG6-205ENST00000570659 CEP170Q5SW79 1584 aa13.75□□□□□ -0.21
SMG6-205ENST00000570659 SHROOM2Q13796 1616 aa13.7□□□□□ -0.22
SMG6-205ENST00000570659 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
SMG6-205ENST00000570659 KDM4FA0A1W2PPD8 638 aa13.69□□□□□ -0.22
SMG6-205ENST00000570659 ILDR1Q86SU0 546 aaPredicted RBP13.69□□□□□ -0.22
SMG6-205ENST00000570659 NUP160Q12769 1436 aa13.68□□□□□ -0.22
SMG6-205ENST00000570659 ADAMTS12P58397 1594 aa13.67□□□□□ -0.22
SMG6-205ENST00000570659 ABCA10Q8WWZ4 1543 aa13.67□□□□□ -0.22
SMG6-205ENST00000570659 DIP2BQ9P265 1576 aa13.58□□□□□ -0.23
SMG6-205ENST00000570659 ABCC10Q5T3U5 1492 aa13.57□□□□□ -0.24
SMG6-205ENST00000570659 PRG4Q92954 1404 aaPredicted RBP13.56□□□□□ -0.24
SMG6-205ENST00000570659 ADCY10Q96PN6 1610 aa13.55□□□□□ -0.24
SMG6-205ENST00000570659 FAM69CQ0P6D2 419 aa13.55□□□□□ -0.24
SMG6-205ENST00000570659 TSPOAP1O95153 1857 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms