RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NISCHQ9Y2I1 1504 aa46.92■■■■■ 5.1
CLK3-227ENST00000570296 ABCC9O60706 1549 aa43.6■■■■■ 4.57
CLK3-227ENST00000570296 CCDC180Q9P1Z9 1646 aa42.67■■■■■ 4.42
CLK3-227ENST00000570296 DNAJC5BQ9UF47 199 aa41.84■■■■■ 4.29
CLK3-227ENST00000570296 RB1CC1Q8TDY2 1594 aa41.12■■■■■ 4.17
CLK3-227ENST00000570296 NACADO15069 1562 aa40.57■■■■■ 4.09
CLK3-227ENST00000570296 PABPN1Q86U42 306 aaKnown RBP eCLIP40.36■■■■■ 4.05
CLK3-227ENST00000570296 UNC13AQ9UPW8 1703 aa40.18■■■■■ 4.02
CLK3-227ENST00000570296 DCAF8L2P0C7V8 631 aa39.93■■■■□ 3.98
CLK3-227ENST00000570296 BICRAQ9NZM4 1560 aa39.93■■■■□ 3.98
CLK3-227ENST00000570296 MYO15BQ96JP2 1530 aa39.7■■■■□ 3.95
CLK3-227ENST00000570296 CECR2Q9BXF3 1484 aa39.43■■■■□ 3.9
CLK3-227ENST00000570296 SHROOM4Q9ULL8 1493 aa39.39■■■■□ 3.9
CLK3-227ENST00000570296 CC2D2AQ9P2K1 1620 aa39.39■■■■□ 3.9
CLK3-227ENST00000570296 DNAJC5Q9H3Z4 198 aa39.31■■■■□ 3.88
CLK3-227ENST00000570296 EIF4G1Q04637 1599 aaKnown RBP39.04■■■■□ 3.84
CLK3-227ENST00000570296 DCAF1Q9Y4B6 1507 aa38.76■■■■□ 3.8
CLK3-227ENST00000570296 SCRIBQ14160 1630 aa38.7■■■■□ 3.79
CLK3-227ENST00000570296 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
CLK3-227ENST00000570296 CUX2O14529 1486 aa38.14■■■■□ 3.7
CLK3-227ENST00000570296 ERCC6Q03468 1493 aa37.77■■■■□ 3.64
CLK3-227ENST00000570296 NCAPD3P42695 1498 aa37.45■■■■□ 3.59
CLK3-227ENST00000570296 ATAD2BQ9ULI0 1458 aa37.14■■■■□ 3.54
CLK3-227ENST00000570296 NESP48681 1621 aa37.14■■■■□ 3.54
CLK3-227ENST00000570296 HMGXB3Q12766 1538 aa37.1■■■■□ 3.53
CLK3-227ENST00000570296 THOC2Q8NI27 1593 aaKnown RBP37.06■■■■□ 3.52
CLK3-227ENST00000570296 TRIM41Q8WV44 630 aa37.03■■■■□ 3.52
CLK3-227ENST00000570296 SMARCA2P51531 1590 aa37.03■■■■□ 3.52
CLK3-227ENST00000570296 SMARCA4P51532 1647 aa36.85■■■■□ 3.49
CLK3-227ENST00000570296 LAMC3Q9Y6N6 1575 aa36.79■■■■□ 3.48
CLK3-227ENST00000570296 BAZ1BQ9UIG0 1483 aaKnown RBP36.73■■■■□ 3.47
CLK3-227ENST00000570296 KIF21AQ7Z4S6 1674 aa36.68■■■■□ 3.46
CLK3-227ENST00000570296 PDS5BQ9NTI5 1447 aa36.6■■■■□ 3.45
CLK3-227ENST00000570296 PEG3Q9GZU2 1588 aa36.54■■■■□ 3.44
CLK3-227ENST00000570296 BAZ1AQ9NRL2 1556 aaPredicted RBP36.52■■■■□ 3.44
CLK3-227ENST00000570296 MRC2Q9UBG0 1479 aa36.34■■■■□ 3.41
CLK3-227ENST00000570296 WDR62O43379 1518 aa36.31■■■■□ 3.4
CLK3-227ENST00000570296 CADPSQ9ULU8 1353 aa36.23■■■■□ 3.39
CLK3-227ENST00000570296 OSCARQ8IYS5 282 aa36.14■■■■□ 3.38
CLK3-227ENST00000570296 MROH2BQ7Z745 1585 aa36.1■■■■□ 3.37
CLK3-227ENST00000570296 CEP164Q9UPV0 1460 aa35.97■■■■□ 3.35
CLK3-227ENST00000570296 RIMBP3CA6NJZ7 1639 aa35.83■■■■□ 3.33
CLK3-227ENST00000570296 RIMBP3BA6NNM3 1639 aa35.83■■■■□ 3.33
CLK3-227ENST00000570296 RIMBP3Q9UFD9 1639 aa35.83■■■■□ 3.33
CLK3-227ENST00000570296 FANCD2Q9BXW9 1451 aa35.81■■■■□ 3.32
CLK3-227ENST00000570296 WIZO95785 1651 aa35.62■■■■□ 3.29
CLK3-227ENST00000570296 CFTRP13569 1480 aa35.6■■■■□ 3.29
CLK3-227ENST00000570296 ARHGEF11O15085 1522 aa35.59■■■■□ 3.29
CLK3-227ENST00000570296 URB2Q14146 1524 aaKnown RBP35.59■■■■□ 3.29
CLK3-227ENST00000570296 CYB5RLQ6IPT4 315 aa35.32■■■■□ 3.24
CLK3-227ENST00000570296 IFT140Q96RY7 1462 aa35.31■■■■□ 3.24
CLK3-227ENST00000570296 ZNF608Q9ULD9 1512 aaPredicted RBP35.31■■■■□ 3.24
CLK3-227ENST00000570296 TRHP20396 242 aaPredicted RBP35.27■■■■□ 3.24
CLK3-227ENST00000570296 PRDM2Q13029 1718 aa35.23■■■■□ 3.23
CLK3-227ENST00000570296 ARAP1Q96P48 1450 aa35.16■■■■□ 3.22
CLK3-227ENST00000570296 TOP2AP11388 1531 aaKnown RBP35.14■■■■□ 3.22
CLK3-227ENST00000570296 EIF4G3O43432 1585 aaKnown RBP35.11■■■■□ 3.21
CLK3-227ENST00000570296 AEBP2Q6ZN18 517 aaPredicted RBP35.09■■■■□ 3.21
CLK3-227ENST00000570296 CHD1O14646 1710 aa35.06■■■■□ 3.2
CLK3-227ENST00000570296 RSF1Q96T23 1441 aaPredicted RBP35.04■■■■□ 3.2
CLK3-227ENST00000570296 TOPBP1Q92547 1522 aa35.02■■■■□ 3.2
CLK3-227ENST00000570296 ABCC8Q09428 1581 aa34.92■■■■□ 3.18
CLK3-227ENST00000570296 AQRO60306 1485 aaKnown RBP eCLIP34.84■■■■□ 3.174e-11■■■■■ 44.9
CLK3-227ENST00000570296 DNMBPQ6XZF7 1577 aa34.82■■■■□ 3.16
CLK3-227ENST00000570296 TARBP1Q13395 1621 aaKnown RBP34.81■■■■□ 3.16
CLK3-227ENST00000570296 FBLN2P98095 1184 aa34.78■■■■□ 3.16
CLK3-227ENST00000570296 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
CLK3-227ENST00000570296 CLASP1Q7Z460 1538 aa34.64■■■■□ 3.14
CLK3-227ENST00000570296 POLA1P09884 1462 aaPredicted RBP34.58■■■■□ 3.13
CLK3-227ENST00000570296 SYNJ1O43426 1573 aa34.53■■■■□ 3.12
CLK3-227ENST00000570296 SNAPC4Q5SXM2 1469 aa34.47■■■■□ 3.11
CLK3-227ENST00000570296 WDR97A6NE52 1622 aa34.47■■■■□ 3.11
CLK3-227ENST00000570296 TDRD9Q8NDG6 1382 aaKnown RBP34.43■■■■□ 3.1
CLK3-227ENST00000570296 RAD54L2Q9Y4B4 1467 aa34.43■■■■□ 3.1
CLK3-227ENST00000570296 MAGI1Q96QZ7 1491 aaPredicted RBP34.39■■■■□ 3.1
CLK3-227ENST00000570296 CHMP7Q8WUX9 453 aaPredicted RBP34.39■■■■□ 3.1
CLK3-227ENST00000570296 SOGA1O94964 1423 aa34.38■■■■□ 3.09
CLK3-227ENST00000570296 GAPVD1Q14C86 1478 aa34.33■■■■□ 3.09
CLK3-227ENST00000570296 SYNJ2O15056 1496 aa34.28■■■■□ 3.08
CLK3-227ENST00000570296 GRIN2BQ13224 1484 aa34.26■■■■□ 3.07
CLK3-227ENST00000570296 FGD5Q6ZNL6 1462 aa34.2■■■■□ 3.06
CLK3-227ENST00000570296 PBRM1Q86U86 1689 aa34.06■■■■□ 3.04
CLK3-227ENST00000570296 CUX1P39880 1505 aa34■■■■□ 3.03
CLK3-227ENST00000570296 ERCC6L2Q5T890 1561 aa33.95■■■■□ 3.03
CLK3-227ENST00000570296 KIF13AQ9H1H9 1805 aa33.92■■■■□ 3.02
CLK3-227ENST00000570296 ABCA5Q8WWZ7 1642 aa33.85■■■■□ 3.01
CLK3-227ENST00000570296 CEP170Q5SW79 1584 aa33.85■■■■□ 3.01
CLK3-227ENST00000570296 GRIN2AQ12879 1464 aa33.81■■■■□ 3
CLK3-227ENST00000570296 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
CLK3-227ENST00000570296 SHROOM2Q13796 1616 aa33.75■■■□□ 2.99
CLK3-227ENST00000570296 NUP160Q12769 1436 aa33.75■■■□□ 2.99
CLK3-227ENST00000570296 ILDR1Q86SU0 546 aaPredicted RBP33.68■■■□□ 2.98
CLK3-227ENST00000570296 ADAMTS12P58397 1594 aa33.67■■■□□ 2.98
CLK3-227ENST00000570296 ABCC10Q5T3U5 1492 aa33.57■■■□□ 2.97
CLK3-227ENST00000570296 KDM4FA0A1W2PPD8 638 aa33.56■■■□□ 2.96
CLK3-227ENST00000570296 FAM69CQ0P6D2 419 aa33.53■■■□□ 2.96
CLK3-227ENST00000570296 FHAD1B1AJZ9 1412 aa33.51■■■□□ 2.95
CLK3-227ENST00000570296 MAPKBP1O60336 1514 aa33.49■■■□□ 2.95
CLK3-227ENST00000570296 PRG4Q92954 1404 aaPredicted RBP33.47■■■□□ 2.95
CLK3-227ENST00000570296 DIP2BQ9P265 1576 aa33.47■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms