RNA–Protein interactions for RNA: ENST00000569891.5

CYLD-216, Transcript of CYLD lysine 63 deubiquitinase, humanhuman

TSL 1 (best)

Gene CYLD, Length 4,665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CYLD-216ENST00000569891 NISCHQ9Y2I1 1504 aa13.13□□□□□ -0.31
CYLD-216ENST00000569891 CCDC180Q9P1Z9 1646 aa11.87□□□□□ -0.51
CYLD-216ENST00000569891 UNC13AQ9UPW8 1703 aa11.82□□□□□ -0.52
CYLD-216ENST00000569891 BICRAQ9NZM4 1560 aa11.24□□□□□ -0.61
CYLD-216ENST00000569891 ZCCHC6Q5VYS8 1495 aaKnown RBP11.19□□□□□ -0.62
CYLD-216ENST00000569891 DCAF1Q9Y4B6 1507 aa11.03□□□□□ -0.64
CYLD-216ENST00000569891 MYO15BQ96JP2 1530 aa10.96□□□□□ -0.66
CYLD-216ENST00000569891 DCAF8L2P0C7V8 631 aa10.88□□□□□ -0.67
CYLD-216ENST00000569891 EIF4G1Q04637 1599 aaKnown RBP10.8□□□□□ -0.68
CYLD-216ENST00000569891 NACADO15069 1562 aa10.7□□□□□ -0.7
CYLD-216ENST00000569891 SCRIBQ14160 1630 aa10.67□□□□□ -0.7
CYLD-216ENST00000569891 ABCC9O60706 1549 aa10.67□□□□□ -0.7
CYLD-216ENST00000569891 SHROOM4Q9ULL8 1493 aa10.66□□□□□ -0.7
CYLD-216ENST00000569891 RB1CC1Q8TDY2 1594 aa10.59□□□□□ -0.71
CYLD-216ENST00000569891 PEG3Q9GZU2 1588 aa10.55□□□□□ -0.72
CYLD-216ENST00000569891 WIZO95785 1651 aa10.4□□□□□ -0.74
CYLD-216ENST00000569891 SUPT5HO00267 1087 aaKnown RBP10.39□□□□□ -0.75
CYLD-216ENST00000569891 CECR2Q9BXF3 1484 aa10.38□□□□□ -0.75
CYLD-216ENST00000569891 PRDM2Q13029 1718 aa10.35□□□□□ -0.75
CYLD-216ENST00000569891 DNAJC5BQ9UF47 199 aa10.33□□□□□ -0.76
CYLD-216ENST00000569891 MROH2BQ7Z745 1585 aa10.33□□□□□ -0.76
CYLD-216ENST00000569891 SMARCA4P51532 1647 aa10.31□□□□□ -0.76
CYLD-216ENST00000569891 BAZ1AQ9NRL2 1556 aaPredicted RBP10.19□□□□□ -0.78
CYLD-216ENST00000569891 WDR97A6NE52 1622 aa10.17□□□□□ -0.78
CYLD-216ENST00000569891 CC2D2AQ9P2K1 1620 aa10.17□□□□□ -0.78
CYLD-216ENST00000569891 RSF1Q96T23 1441 aaPredicted RBP10.15□□□□□ -0.78
CYLD-216ENST00000569891 SMARCA2P51531 1590 aa10.1□□□□□ -0.79
CYLD-216ENST00000569891 KIF21AQ7Z4S6 1674 aa10.09□□□□□ -0.79
CYLD-216ENST00000569891 PABPN1Q86U42 306 aaKnown RBP eCLIP10.05□□□□□ -0.8
CYLD-216ENST00000569891 THOC2Q8NI27 1593 aaKnown RBP10.02□□□□□ -0.81
CYLD-216ENST00000569891 TOP2AP11388 1531 aaKnown RBP9.97□□□□□ -0.81
CYLD-216ENST00000569891 HMGXB3Q12766 1538 aa9.96□□□□□ -0.82
CYLD-216ENST00000569891 CHIC1Q5VXU3 224 aa9.95□□□□□ -0.82
CYLD-216ENST00000569891 LRRIQ1Q96JM4 1722 aa9.94□□□□□ -0.82
CYLD-216ENST00000569891 BAZ1BQ9UIG0 1483 aaKnown RBP9.9□□□□□ -0.82
CYLD-216ENST00000569891 ATAD2BQ9ULI0 1458 aa9.89□□□□□ -0.83
CYLD-216ENST00000569891 TRIM41Q8WV44 630 aa9.88□□□□□ -0.83
CYLD-216ENST00000569891 BIVM-ERCC5R4GMW8 1640 aa9.84□□□□□ -0.83
CYLD-216ENST00000569891 TARBP1Q13395 1621 aaKnown RBP9.84□□□□□ -0.83
CYLD-216ENST00000569891 NCAPD3P42695 1498 aa9.82□□□□□ -0.84
CYLD-216ENST00000569891 CCDC88BA6NC98 1476 aa9.8□□□□□ -0.84
CYLD-216ENST00000569891 AEBP2Q6ZN18 517 aaPredicted RBP9.8□□□□□ -0.84
CYLD-216ENST00000569891 SYNJ1O43426 1573 aa9.8□□□□□ -0.84
CYLD-216ENST00000569891 NESP48681 1621 aa9.76□□□□□ -0.85
CYLD-216ENST00000569891 EEA1Q15075 1411 aa9.71□□□□□ -0.86
CYLD-216ENST00000569891 ABCA5Q8WWZ7 1642 aa9.67□□□□□ -0.86
CYLD-216ENST00000569891 WRNQ14191 1432 aaPredicted RBP eCLIP9.66□□□□□ -0.86
CYLD-216ENST00000569891 CUX1P39880 1505 aa9.65□□□□□ -0.86
CYLD-216ENST00000569891 ABCC8Q09428 1581 aa9.62□□□□□ -0.87
CYLD-216ENST00000569891 URB2Q14146 1524 aaKnown RBP9.62□□□□□ -0.87
CYLD-216ENST00000569891 CUX2O14529 1486 aa9.61□□□□□ -0.87
CYLD-216ENST00000569891 UTRNP46939 3433 aa9.6□□□□□ -0.87
CYLD-216ENST00000569891 CFTRP13569 1480 aa9.6□□□□□ -0.87
CYLD-216ENST00000569891 TOP2BQ02880 1626 aa9.6□□□□□ -0.87
CYLD-216ENST00000569891 CADPSQ9ULU8 1353 aa9.59□□□□□ -0.87
CYLD-216ENST00000569891 PBRM1Q86U86 1689 aa9.59□□□□□ -0.87
CYLD-216ENST00000569891 WDR62O43379 1518 aa9.59□□□□□ -0.87
CYLD-216ENST00000569891 FAM9AQ8IZU1 332 aaPredicted RBP9.57□□□□□ -0.88
CYLD-216ENST00000569891 CSRNP3Q8WYN3 585 aa9.53□□□□□ -0.88
CYLD-216ENST00000569891 PDS5BQ9NTI5 1447 aa9.51□□□□□ -0.89
CYLD-216ENST00000569891 LAMC3Q9Y6N6 1575 aa9.51□□□□□ -0.89
CYLD-216ENST00000569891 RUSC2Q8N2Y8 1516 aa9.5□□□□□ -0.89
CYLD-216ENST00000569891 CEP164Q9UPV0 1460 aa9.49□□□□□ -0.89
CYLD-216ENST00000569891 GOLGA3Q08378 1498 aa9.48□□□□□ -0.89
CYLD-216ENST00000569891 KIF27Q86VH2 1401 aa9.48□□□□□ -0.89
CYLD-216ENST00000569891 LOC105371045A0A1W2PR82 267 aa9.48□□□□□ -0.89
CYLD-216ENST00000569891 SIGLEC1Q9BZZ2 1709 aa9.47□□□□□ -0.89
CYLD-216ENST00000569891 UBTFP17480 764 aaKnown RBP9.47□□□□□ -0.89
CYLD-216ENST00000569891 FANCD2Q9BXW9 1451 aa9.46□□□□□ -0.89
CYLD-216ENST00000569891 SHROOM2Q13796 1616 aa9.46□□□□□ -0.89
CYLD-216ENST00000569891 CHD1O14646 1710 aa9.45□□□□□ -0.9
CYLD-216ENST00000569891 TNIKQ9UKE5 1360 aa9.45□□□□□ -0.9
CYLD-216ENST00000569891 GOLGB1Q14789 3259 aaKnown RBP9.43□□□□□ -0.9
CYLD-216ENST00000569891 EIF4G3O43432 1585 aaKnown RBP9.42□□□□□ -0.9
CYLD-216ENST00000569891 KIF21BO75037 1637 aa9.42□□□□□ -0.9
CYLD-216ENST00000569891 SOGA1O94964 1423 aa9.41□□□□□ -0.9
CYLD-216ENST00000569891 DNMBPQ6XZF7 1577 aa9.41□□□□□ -0.9
CYLD-216ENST00000569891 APLP2Q06481 763 aa9.4□□□□□ -0.91
CYLD-216ENST00000569891 ERICH3Q5RHP9 1530 aa9.38□□□□□ -0.91
CYLD-216ENST00000569891 ERCC6L2Q5T890 1561 aa9.36□□□□□ -0.91
CYLD-216ENST00000569891 TRIM26Q12899 539 aaPredicted RBP9.36□□□□□ -0.91
CYLD-216ENST00000569891 FGD5Q6ZNL6 1462 aa9.35□□□□□ -0.91
CYLD-216ENST00000569891 EHMT2Q96KQ7 1210 aa9.35□□□□□ -0.91
CYLD-216ENST00000569891 PPRC1Q5VV67 1664 aaKnown RBP9.35□□□□□ -0.91
CYLD-216ENST00000569891 CEP162Q5TB80 1403 aa9.34□□□□□ -0.91
CYLD-216ENST00000569891 TOPBP1Q92547 1522 aa9.34□□□□□ -0.91
CYLD-216ENST00000569891 ZNF608Q9ULD9 1512 aaPredicted RBP9.32□□□□□ -0.92
CYLD-216ENST00000569891 CEP170Q5SW79 1584 aa9.31□□□□□ -0.92
CYLD-216ENST00000569891 CLASP1Q7Z460 1538 aa9.31□□□□□ -0.92
CYLD-216ENST00000569891 MRC2Q9UBG0 1479 aa9.31□□□□□ -0.92
CYLD-216ENST00000569891 ABCA10Q8WWZ4 1543 aa9.31□□□□□ -0.92
CYLD-216ENST00000569891 CLIP1P30622 1438 aa9.3□□□□□ -0.92
CYLD-216ENST00000569891 ERCC6Q03468 1493 aa9.3□□□□□ -0.92
CYLD-216ENST00000569891 PRXQ9BXM0 1461 aa9.3□□□□□ -0.92
CYLD-216ENST00000569891 RAPGEF2Q9Y4G8 1499 aa9.29□□□□□ -0.92
CYLD-216ENST00000569891 CARMIL1Q5VZK9 1371 aa9.29□□□□□ -0.92
CYLD-216ENST00000569891 CTTNBP2Q8WZ74 1663 aa9.28□□□□□ -0.92
CYLD-216ENST00000569891 POLA1P09884 1462 aaPredicted RBP9.28□□□□□ -0.92
CYLD-216ENST00000569891 SRCAPQ6ZRS2 3230 aa9.27□□□□□ -0.93
CYLD-216ENST00000569891 CUL7Q14999 1698 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms