RNA–Protein interactions for RNA: ENST00000569575.5

RAB40C-212, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-212ENST00000569575 NISCHQ9Y2I1 1504 aa55.46■■■■■ 6.47
RAB40C-212ENST00000569575 CCDC180Q9P1Z9 1646 aa49.05■■■■■ 5.44
RAB40C-212ENST00000569575 ABCC9O60706 1549 aa47.01■■■■■ 5.12
RAB40C-212ENST00000569575 ZCCHC6Q5VYS8 1495 aaKnown RBP46.35■■■■■ 5.01
RAB40C-212ENST00000569575 DCAF1Q9Y4B6 1507 aa46.08■■■■■ 4.97
RAB40C-212ENST00000569575 MYO15BQ96JP2 1530 aa46.04■■■■■ 4.96
RAB40C-212ENST00000569575 NACADO15069 1562 aa45.96■■■■■ 4.95
RAB40C-212ENST00000569575 DCAF8L2P0C7V8 631 aa45.88■■■■■ 4.94
RAB40C-212ENST00000569575 RB1CC1Q8TDY2 1594 aa45.77■■■■■ 4.92
RAB40C-212ENST00000569575 UNC13AQ9UPW8 1703 aa44.58■■■■■ 4.73
RAB40C-212ENST00000569575 SCRIBQ14160 1630 aa44.57■■■■■ 4.73
RAB40C-212ENST00000569575 BICRAQ9NZM4 1560 aa44.22■■■■■ 4.67
RAB40C-212ENST00000569575 SHROOM4Q9ULL8 1493 aa44.13■■■■■ 4.65
RAB40C-212ENST00000569575 PABPN1Q86U42 306 aaKnown RBP eCLIP44.03■■■■■ 4.64
RAB40C-212ENST00000569575 EIF4G1Q04637 1599 aaKnown RBP43.03■■■■■ 4.48
RAB40C-212ENST00000569575 BAZ1AQ9NRL2 1556 aaPredicted RBP42.99■■■■■ 4.47
RAB40C-212ENST00000569575 CECR2Q9BXF3 1484 aa42.97■■■■■ 4.47
RAB40C-212ENST00000569575 SMARCA4P51532 1647 aa42.83■■■■■ 4.45
RAB40C-212ENST00000569575 MROH2BQ7Z745 1585 aa42.65■■■■■ 4.42
RAB40C-212ENST00000569575 CC2D2AQ9P2K1 1620 aa42.63■■■■■ 4.41
RAB40C-212ENST00000569575 PEG3Q9GZU2 1588 aa42.52■■■■■ 4.4
RAB40C-212ENST00000569575 RSF1Q96T23 1441 aaPredicted RBP42.51■■■■■ 4.4
RAB40C-212ENST00000569575 SMARCA2P51531 1590 aa42.5■■■■■ 4.39
RAB40C-212ENST00000569575 ATAD2BQ9ULI0 1458 aa42.43■■■■■ 4.38
RAB40C-212ENST00000569575 DNAJC5BQ9UF47 199 aa42.39■■■■■ 4.38
RAB40C-212ENST00000569575 NCAPD3P42695 1498 aa42.37■■■■■ 4.37
RAB40C-212ENST00000569575 HMGXB3Q12766 1538 aa42.22■■■■■ 4.35
RAB40C-212ENST00000569575 WIZO95785 1651 aa42.2■■■■■ 4.35
RAB40C-212ENST00000569575 BAZ1BQ9UIG0 1483 aaKnown RBP42.12■■■■■ 4.33
RAB40C-212ENST00000569575 TOP2AP11388 1531 aaKnown RBP41.92■■■■■ 4.3
RAB40C-212ENST00000569575 SUPT5HO00267 1087 aaKnown RBP41.89■■■■■ 4.3
RAB40C-212ENST00000569575 CCDC88BA6NC98 1476 aa41.38■■■■■ 4.21
RAB40C-212ENST00000569575 CADPSQ9ULU8 1353 aa41.14■■■■■ 4.18
RAB40C-212ENST00000569575 LAMC3Q9Y6N6 1575 aa41.12■■■■■ 4.17
RAB40C-212ENST00000569575 CFTRP13569 1480 aa41.06■■■■■ 4.16
RAB40C-212ENST00000569575 NESP48681 1621 aa40.87■■■■■ 4.13
RAB40C-212ENST00000569575 PDS5BQ9NTI5 1447 aa40.84■■■■■ 4.13
RAB40C-212ENST00000569575 PRDM2Q13029 1718 aa40.81■■■■■ 4.12
RAB40C-212ENST00000569575 FANCD2Q9BXW9 1451 aa40.61■■■■■ 4.09
RAB40C-212ENST00000569575 ERCC6Q03468 1493 aa40.56■■■■■ 4.08
RAB40C-212ENST00000569575 CEP164Q9UPV0 1460 aa40.51■■■■■ 4.08
RAB40C-212ENST00000569575 KIF21AQ7Z4S6 1674 aa40.47■■■■■ 4.07
RAB40C-212ENST00000569575 MRC2Q9UBG0 1479 aa40.3■■■■■ 4.04
RAB40C-212ENST00000569575 ABCC8Q09428 1581 aa40.3■■■■■ 4.04
RAB40C-212ENST00000569575 THOC2Q8NI27 1593 aaKnown RBP40.18■■■■■ 4.02
RAB40C-212ENST00000569575 WDR62O43379 1518 aa40.14■■■■■ 4.02
RAB40C-212ENST00000569575 DNMBPQ6XZF7 1577 aa40.1■■■■■ 4.01
RAB40C-212ENST00000569575 WRNQ14191 1432 aaPredicted RBP eCLIP40.09■■■■■ 4.01
RAB40C-212ENST00000569575 URB2Q14146 1524 aaKnown RBP40.09■■■■■ 4.01
RAB40C-212ENST00000569575 TOPBP1Q92547 1522 aa40.04■■■■■ 4
RAB40C-212ENST00000569575 CUX1P39880 1505 aa39.97■■■■□ 3.99
RAB40C-212ENST00000569575 CUX2O14529 1486 aa39.96■■■■□ 3.99
RAB40C-212ENST00000569575 TOP2BQ02880 1626 aa39.92■■■■□ 3.98
RAB40C-212ENST00000569575 BIVM-ERCC5R4GMW8 1640 aa39.91■■■■□ 3.98
RAB40C-212ENST00000569575 SYNJ1O43426 1573 aa39.83■■■■□ 3.97
RAB40C-212ENST00000569575 POLA1P09884 1462 aaPredicted RBP39.75■■■■□ 3.95
RAB40C-212ENST00000569575 FGD5Q6ZNL6 1462 aa39.75■■■■□ 3.95
RAB40C-212ENST00000569575 TRIM41Q8WV44 630 aa39.68■■■■□ 3.94
RAB40C-212ENST00000569575 IFT140Q96RY7 1462 aa39.68■■■■□ 3.94
RAB40C-212ENST00000569575 CHIC1Q5VXU3 224 aa39.64■■■■□ 3.94
RAB40C-212ENST00000569575 SOGA1O94964 1423 aa39.64■■■■□ 3.94
RAB40C-212ENST00000569575 TARBP1Q13395 1621 aaKnown RBP39.54■■■■□ 3.92
RAB40C-212ENST00000569575 ABCA10Q8WWZ4 1543 aa39.49■■■■□ 3.91
RAB40C-212ENST00000569575 WDR97A6NE52 1622 aa39.48■■■■□ 3.91
RAB40C-212ENST00000569575 RAD54L2Q9Y4B4 1467 aa39.47■■■■□ 3.91
RAB40C-212ENST00000569575 KIF27Q86VH2 1401 aa39.25■■■■□ 3.87
RAB40C-212ENST00000569575 ZNF608Q9ULD9 1512 aaPredicted RBP39.24■■■■□ 3.87
RAB40C-212ENST00000569575 TDRD9Q8NDG6 1382 aaKnown RBP39.22■■■■□ 3.87
RAB40C-212ENST00000569575 ABCA5Q8WWZ7 1642 aa39.2■■■■□ 3.87
RAB40C-212ENST00000569575 GAPVD1Q14C86 1478 aa39.19■■■■□ 3.86
RAB40C-212ENST00000569575 EIF4G3O43432 1585 aaKnown RBP39.18■■■■□ 3.86
RAB40C-212ENST00000569575 AQRO60306 1485 aaKnown RBP eCLIP39.17■■■■□ 3.862e-6■■■■■ 26.9
RAB40C-212ENST00000569575 EEA1Q15075 1411 aa39.12■■■■□ 3.85
RAB40C-212ENST00000569575 GRIN2BQ13224 1484 aa39.11■■■■□ 3.85
RAB40C-212ENST00000569575 ERICH3Q5RHP9 1530 aa39.07■■■■□ 3.84
RAB40C-212ENST00000569575 PBRM1Q86U86 1689 aa39■■■■□ 3.83
RAB40C-212ENST00000569575 MAGI1Q96QZ7 1491 aaPredicted RBP38.97■■■■□ 3.83
RAB40C-212ENST00000569575 IGF1RP08069 1367 aa38.94■■■■□ 3.82
RAB40C-212ENST00000569575 RUSC2Q8N2Y8 1516 aa38.89■■■■□ 3.82
RAB40C-212ENST00000569575 CUL7Q14999 1698 aa38.84■■■■□ 3.81
RAB40C-212ENST00000569575 SNAPC4Q5SXM2 1469 aa38.84■■■■□ 3.81
RAB40C-212ENST00000569575 CSRNP3Q8WYN3 585 aa38.83■■■■□ 3.81
RAB40C-212ENST00000569575 FHAD1B1AJZ9 1412 aa38.81■■■■□ 3.8
RAB40C-212ENST00000569575 SYNJ2O15056 1496 aa38.77■■■■□ 3.8
RAB40C-212ENST00000569575 ADAMTS12P58397 1594 aa38.74■■■■□ 3.79
RAB40C-212ENST00000569575 CARMIL1Q5VZK9 1371 aa38.74■■■■□ 3.79
RAB40C-212ENST00000569575 CHMP7Q8WUX9 453 aaPredicted RBP38.68■■■■□ 3.78
RAB40C-212ENST00000569575 PRXQ9BXM0 1461 aa38.65■■■■□ 3.78
RAB40C-212ENST00000569575 FAM9AQ8IZU1 332 aaPredicted RBP38.62■■■■□ 3.77
RAB40C-212ENST00000569575 RAPGEF2Q9Y4G8 1499 aa38.61■■■■□ 3.77
RAB40C-212ENST00000569575 GRIN2AQ12879 1464 aa38.57■■■■□ 3.76
RAB40C-212ENST00000569575 FBLN2P98095 1184 aa38.55■■■■□ 3.76
RAB40C-212ENST00000569575 CHD1O14646 1710 aa38.52■■■■□ 3.76
RAB40C-212ENST00000569575 KIF21BO75037 1637 aa38.52■■■■□ 3.76
RAB40C-212ENST00000569575 OSCARQ8IYS5 282 aa38.45■■■■□ 3.75
RAB40C-212ENST00000569575 NUP160Q12769 1436 aa38.4■■■■□ 3.74
RAB40C-212ENST00000569575 GOLGA3Q08378 1498 aa38.35■■■■□ 3.73
RAB40C-212ENST00000569575 CEP170Q5SW79 1584 aa38.27■■■■□ 3.72
RAB40C-212ENST00000569575 KIAA0586Q9BVV6 1533 aa38.26■■■■□ 3.72
RAB40C-212ENST00000569575 CLASP1Q7Z460 1538 aa38.18■■■■□ 3.7
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