RNA–Protein interactions for RNA: ENST00000569263.1

CNOT1-217, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 304 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-217ENST00000569263 NISCHQ9Y2I1 1504 aa31.24■■■□□ 2.59
CNOT1-217ENST00000569263 CCDC180Q9P1Z9 1646 aa27.74■■■□□ 2.03
CNOT1-217ENST00000569263 ABCC9O60706 1549 aa26.83■■□□□ 1.89
CNOT1-217ENST00000569263 ZCCHC6Q5VYS8 1495 aaKnown RBP26.09■■□□□ 1.77
CNOT1-217ENST00000569263 DCAF8L2P0C7V8 631 aa25.99■■□□□ 1.75
CNOT1-217ENST00000569263 NACADO15069 1562 aa25.97■■□□□ 1.75
CNOT1-217ENST00000569263 RB1CC1Q8TDY2 1594 aa25.96■■□□□ 1.75
CNOT1-217ENST00000569263 MYO15BQ96JP2 1530 aa25.86■■□□□ 1.73
CNOT1-217ENST00000569263 DCAF1Q9Y4B6 1507 aa25.85■■□□□ 1.73
CNOT1-217ENST00000569263 UNC13AQ9UPW8 1703 aa25.42■■□□□ 1.66
CNOT1-217ENST00000569263 SCRIBQ14160 1630 aa25.32■■□□□ 1.64
CNOT1-217ENST00000569263 BICRAQ9NZM4 1560 aa25.12■■□□□ 1.61
CNOT1-217ENST00000569263 PABPN1Q86U42 306 aaKnown RBP eCLIP25.07■■□□□ 1.6
CNOT1-217ENST00000569263 SHROOM4Q9ULL8 1493 aa24.9■■□□□ 1.58
CNOT1-217ENST00000569263 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
CNOT1-217ENST00000569263 CC2D2AQ9P2K1 1620 aa24.31■■□□□ 1.48
CNOT1-217ENST00000569263 CECR2Q9BXF3 1484 aa24.28■■□□□ 1.48
CNOT1-217ENST00000569263 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
CNOT1-217ENST00000569263 BAZ1AQ9NRL2 1556 aaPredicted RBP24.23■■□□□ 1.47
CNOT1-217ENST00000569263 SMARCA4P51532 1647 aa24.23■■□□□ 1.47
CNOT1-217ENST00000569263 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.44
CNOT1-217ENST00000569263 SMARCA2P51531 1590 aa24.01■■□□□ 1.43
CNOT1-217ENST00000569263 ATAD2BQ9ULI0 1458 aa23.97■■□□□ 1.43
CNOT1-217ENST00000569263 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.43
CNOT1-217ENST00000569263 NCAPD3P42695 1498 aa23.9■■□□□ 1.42
CNOT1-217ENST00000569263 HMGXB3Q12766 1538 aa23.88■■□□□ 1.41
CNOT1-217ENST00000569263 WIZO95785 1651 aa23.87■■□□□ 1.41
CNOT1-217ENST00000569263 RSF1Q96T23 1441 aaPredicted RBP23.86■■□□□ 1.41
CNOT1-217ENST00000569263 BAZ1BQ9UIG0 1483 aaKnown RBP23.84■■□□□ 1.41
CNOT1-217ENST00000569263 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.37
CNOT1-217ENST00000569263 SUPT5HO00267 1087 aaKnown RBP23.48■■□□□ 1.35
CNOT1-217ENST00000569263 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
CNOT1-217ENST00000569263 CCDC88BA6NC98 1476 aa23.3■■□□□ 1.32
CNOT1-217ENST00000569263 NESP48681 1621 aa23.28■■□□□ 1.32
CNOT1-217ENST00000569263 CADPSQ9ULU8 1353 aa23.23■■□□□ 1.31
CNOT1-217ENST00000569263 PRDM2Q13029 1718 aa23.15■■□□□ 1.3
CNOT1-217ENST00000569263 CFTRP13569 1480 aa23.15■■□□□ 1.3
CNOT1-217ENST00000569263 ERCC6Q03468 1493 aa23.14■■□□□ 1.29
CNOT1-217ENST00000569263 KIF21AQ7Z4S6 1674 aa23.1■■□□□ 1.29
CNOT1-217ENST00000569263 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
CNOT1-217ENST00000569263 FANCD2Q9BXW9 1451 aa23■■□□□ 1.27
CNOT1-217ENST00000569263 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
CNOT1-217ENST00000569263 THOC2Q8NI27 1593 aaKnown RBP22.93■■□□□ 1.26
CNOT1-217ENST00000569263 MRC2Q9UBG0 1479 aa22.87■■□□□ 1.25
CNOT1-217ENST00000569263 WDR62O43379 1518 aa22.79■■□□□ 1.24
CNOT1-217ENST00000569263 CUX2O14529 1486 aa22.78■■□□□ 1.24
CNOT1-217ENST00000569263 URB2Q14146 1524 aaKnown RBP22.74■■□□□ 1.23
CNOT1-217ENST00000569263 DNMBPQ6XZF7 1577 aa22.68■■□□□ 1.22
CNOT1-217ENST00000569263 ABCC8Q09428 1581 aa22.67■■□□□ 1.22
CNOT1-217ENST00000569263 TOPBP1Q92547 1522 aa22.66■■□□□ 1.22
CNOT1-217ENST00000569263 CUX1P39880 1505 aa22.58■■□□□ 1.21
CNOT1-217ENST00000569263 WRNQ14191 1432 aaPredicted RBP eCLIP22.53■■□□□ 1.2
CNOT1-217ENST00000569263 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
CNOT1-217ENST00000569263 SYNJ1O43426 1573 aa22.49■■□□□ 1.19
CNOT1-217ENST00000569263 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
CNOT1-217ENST00000569263 POLA1P09884 1462 aaPredicted RBP22.48■■□□□ 1.19
CNOT1-217ENST00000569263 FGD5Q6ZNL6 1462 aa22.48■■□□□ 1.19
CNOT1-217ENST00000569263 IFT140Q96RY7 1462 aa22.46■■□□□ 1.19
CNOT1-217ENST00000569263 TARBP1Q13395 1621 aaKnown RBP22.41■■□□□ 1.18
CNOT1-217ENST00000569263 SOGA1O94964 1423 aa22.38■■□□□ 1.17
CNOT1-217ENST00000569263 RAD54L2Q9Y4B4 1467 aa22.37■■□□□ 1.17
CNOT1-217ENST00000569263 WDR97A6NE52 1622 aa22.34■■□□□ 1.17
CNOT1-217ENST00000569263 EIF4G3O43432 1585 aaKnown RBP22.31■■□□□ 1.16
CNOT1-217ENST00000569263 ZNF608Q9ULD9 1512 aaPredicted RBP22.31■■□□□ 1.16
CNOT1-217ENST00000569263 ABCA10Q8WWZ4 1543 aa22.26■■□□□ 1.15
CNOT1-217ENST00000569263 AQRO60306 1485 aaKnown RBP eCLIP22.22■■□□□ 1.158e-7■■■■■ 28.7
CNOT1-217ENST00000569263 TDRD9Q8NDG6 1382 aaKnown RBP22.21■■□□□ 1.15
CNOT1-217ENST00000569263 ABCA5Q8WWZ7 1642 aa22.19■■□□□ 1.14
CNOT1-217ENST00000569263 PBRM1Q86U86 1689 aa22.17■■□□□ 1.14
CNOT1-217ENST00000569263 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
CNOT1-217ENST00000569263 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
CNOT1-217ENST00000569263 GRIN2BQ13224 1484 aa22.11■■□□□ 1.13
CNOT1-217ENST00000569263 SNAPC4Q5SXM2 1469 aa22.06■■□□□ 1.12
CNOT1-217ENST00000569263 KIF27Q86VH2 1401 aa22.05■■□□□ 1.12
CNOT1-217ENST00000569263 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
CNOT1-217ENST00000569263 CHIC1Q5VXU3 224 aa22.02■■□□□ 1.12
CNOT1-217ENST00000569263 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
CNOT1-217ENST00000569263 CHD1O14646 1710 aa22■■□□□ 1.11
CNOT1-217ENST00000569263 ADAMTS12P58397 1594 aa21.97■■□□□ 1.11
CNOT1-217ENST00000569263 SYNJ2O15056 1496 aa21.93■■□□□ 1.1
CNOT1-217ENST00000569263 FBLN2P98095 1184 aa21.92■■□□□ 1.1
CNOT1-217ENST00000569263 CUL7Q14999 1698 aa21.91■■□□□ 1.1
CNOT1-217ENST00000569263 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
CNOT1-217ENST00000569263 RUSC2Q8N2Y8 1516 aa21.89■■□□□ 1.09
CNOT1-217ENST00000569263 FHAD1B1AJZ9 1412 aa21.89■■□□□ 1.09
CNOT1-217ENST00000569263 IGF1RP08069 1367 aa21.86■■□□□ 1.09
CNOT1-217ENST00000569263 GRIN2AQ12879 1464 aa21.83■■□□□ 1.09
CNOT1-217ENST00000569263 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
CNOT1-217ENST00000569263 EEA1Q15075 1411 aa21.8■■□□□ 1.08
CNOT1-217ENST00000569263 CARMIL1Q5VZK9 1371 aa21.77■■□□□ 1.08
CNOT1-217ENST00000569263 CEP170Q5SW79 1584 aa21.73■■□□□ 1.07
CNOT1-217ENST00000569263 FAM9AQ8IZU1 332 aaPredicted RBP21.71■■□□□ 1.07
CNOT1-217ENST00000569263 RAPGEF2Q9Y4G8 1499 aa21.71■■□□□ 1.07
CNOT1-217ENST00000569263 CLASP1Q7Z460 1538 aa21.7■■□□□ 1.07
CNOT1-217ENST00000569263 NUP160Q12769 1436 aa21.7■■□□□ 1.06
CNOT1-217ENST00000569263 DNAJC5Q9H3Z4 198 aa21.69■■□□□ 1.06
CNOT1-217ENST00000569263 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
CNOT1-217ENST00000569263 PRXQ9BXM0 1461 aa21.65■■□□□ 1.06
CNOT1-217ENST00000569263 KIF21BO75037 1637 aa21.59■■□□□ 1.05
CNOT1-217ENST00000569263 CTTNBP2Q8WZ74 1663 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms