RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 NISCHQ9Y2I1 1504 aa30.78■■■□□ 2.52
VPS9D1-207ENST00000568691 ABCC9O60706 1549 aa28.64■■■□□ 2.18
VPS9D1-207ENST00000568691 CCDC180Q9P1Z9 1646 aa27.82■■■□□ 2.04
VPS9D1-207ENST00000568691 DNAJC5BQ9UF47 199 aa27.69■■■□□ 2.02
VPS9D1-207ENST00000568691 RB1CC1Q8TDY2 1594 aa26.84■■□□□ 1.89
VPS9D1-207ENST00000568691 PABPN1Q86U42 306 aaKnown RBP eCLIP26.59■■□□□ 1.85
VPS9D1-207ENST00000568691 NACADO15069 1562 aa26.5■■□□□ 1.83
VPS9D1-207ENST00000568691 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
VPS9D1-207ENST00000568691 BICRAQ9NZM4 1560 aa26.26■■□□□ 1.79
VPS9D1-207ENST00000568691 DCAF8L2P0C7V8 631 aa26.19■■□□□ 1.78
VPS9D1-207ENST00000568691 MYO15BQ96JP2 1530 aa25.93■■□□□ 1.74
VPS9D1-207ENST00000568691 CECR2Q9BXF3 1484 aa25.85■■□□□ 1.73
VPS9D1-207ENST00000568691 CC2D2AQ9P2K1 1620 aa25.81■■□□□ 1.72
VPS9D1-207ENST00000568691 DNAJC5Q9H3Z4 198 aa25.81■■□□□ 1.72
VPS9D1-207ENST00000568691 SHROOM4Q9ULL8 1493 aa25.66■■□□□ 1.7
VPS9D1-207ENST00000568691 EIF4G1Q04637 1599 aaKnown RBP25.58■■□□□ 1.69
VPS9D1-207ENST00000568691 ZCCHC6Q5VYS8 1495 aaKnown RBP25.37■■□□□ 1.65
VPS9D1-207ENST00000568691 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
VPS9D1-207ENST00000568691 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
VPS9D1-207ENST00000568691 CUX2O14529 1486 aa24.91■■□□□ 1.58
VPS9D1-207ENST00000568691 ERCC6Q03468 1493 aa24.66■■□□□ 1.54
VPS9D1-207ENST00000568691 NCAPD3P42695 1498 aa24.56■■□□□ 1.52
VPS9D1-207ENST00000568691 NESP48681 1621 aa24.46■■□□□ 1.51
VPS9D1-207ENST00000568691 ATAD2BQ9ULI0 1458 aa24.39■■□□□ 1.5
VPS9D1-207ENST00000568691 THOC2Q8NI27 1593 aaKnown RBP24.3■■□□□ 1.48
VPS9D1-207ENST00000568691 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
VPS9D1-207ENST00000568691 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
VPS9D1-207ENST00000568691 SMARCA2P51531 1590 aa24.17■■□□□ 1.46
VPS9D1-207ENST00000568691 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
VPS9D1-207ENST00000568691 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
VPS9D1-207ENST00000568691 LAMC3Q9Y6N6 1575 aa24.03■■□□□ 1.44
VPS9D1-207ENST00000568691 KIF21AQ7Z4S6 1674 aa24.01■■□□□ 1.43
VPS9D1-207ENST00000568691 PEG3Q9GZU2 1588 aa23.92■■□□□ 1.42
VPS9D1-207ENST00000568691 PDS5BQ9NTI5 1447 aa23.9■■□□□ 1.42
VPS9D1-207ENST00000568691 BAZ1AQ9NRL2 1556 aaPredicted RBP23.86■■□□□ 1.41
VPS9D1-207ENST00000568691 MRC2Q9UBG0 1479 aa23.79■■□□□ 1.4
VPS9D1-207ENST00000568691 WDR62O43379 1518 aa23.78■■□□□ 1.4
VPS9D1-207ENST00000568691 MROH2BQ7Z745 1585 aa23.76■■□□□ 1.39
VPS9D1-207ENST00000568691 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
VPS9D1-207ENST00000568691 OSCARQ8IYS5 282 aa23.64■■□□□ 1.37
VPS9D1-207ENST00000568691 CEP164Q9UPV0 1460 aa23.52■■□□□ 1.36
VPS9D1-207ENST00000568691 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
VPS9D1-207ENST00000568691 RIMBP3CA6NJZ7 1639 aa23.47■■□□□ 1.35
VPS9D1-207ENST00000568691 RIMBP3BA6NNM3 1639 aa23.47■■□□□ 1.35
VPS9D1-207ENST00000568691 RIMBP3Q9UFD9 1639 aa23.47■■□□□ 1.35
VPS9D1-207ENST00000568691 URB2Q14146 1524 aaKnown RBP23.4■■□□□ 1.34
VPS9D1-207ENST00000568691 WIZO95785 1651 aa23.38■■□□□ 1.33
VPS9D1-207ENST00000568691 CFTRP13569 1480 aa23.36■■□□□ 1.33
VPS9D1-207ENST00000568691 ARHGEF11O15085 1522 aa23.33■■□□□ 1.33
VPS9D1-207ENST00000568691 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
VPS9D1-207ENST00000568691 CYB5RLQ6IPT4 315 aa23.18■■□□□ 1.3
VPS9D1-207ENST00000568691 ARAP1Q96P48 1450 aa23.1■■□□□ 1.29
VPS9D1-207ENST00000568691 IFT140Q96RY7 1462 aa23.09■■□□□ 1.29
VPS9D1-207ENST00000568691 TRHP20396 242 aaPredicted RBP23.07■■□□□ 1.28
VPS9D1-207ENST00000568691 TOP2AP11388 1531 aaKnown RBP23.01■■□□□ 1.27
VPS9D1-207ENST00000568691 RSF1Q96T23 1441 aaPredicted RBP23■■□□□ 1.27
VPS9D1-207ENST00000568691 EIF4G3O43432 1585 aaKnown RBP22.98■■□□□ 1.27
VPS9D1-207ENST00000568691 TOPBP1Q92547 1522 aa22.98■■□□□ 1.27
VPS9D1-207ENST00000568691 CHD1O14646 1710 aa22.91■■□□□ 1.26
VPS9D1-207ENST00000568691 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
VPS9D1-207ENST00000568691 PRDM2Q13029 1718 aa22.89■■□□□ 1.26
VPS9D1-207ENST00000568691 AEBP2Q6ZN18 517 aaPredicted RBP22.85■■□□□ 1.25
VPS9D1-207ENST00000568691 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
VPS9D1-207ENST00000568691 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
VPS9D1-207ENST00000568691 FBLN2P98095 1184 aa22.78■■□□□ 1.24
VPS9D1-207ENST00000568691 DNMBPQ6XZF7 1577 aa22.77■■□□□ 1.24
VPS9D1-207ENST00000568691 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
VPS9D1-207ENST00000568691 CLASP1Q7Z460 1538 aa22.72■■□□□ 1.23
VPS9D1-207ENST00000568691 POLA1P09884 1462 aaPredicted RBP22.7■■□□□ 1.22
VPS9D1-207ENST00000568691 RAD54L2Q9Y4B4 1467 aa22.66■■□□□ 1.22
VPS9D1-207ENST00000568691 TDRD9Q8NDG6 1382 aaKnown RBP22.65■■□□□ 1.22
VPS9D1-207ENST00000568691 SNAPC4Q5SXM2 1469 aa22.61■■□□□ 1.21
VPS9D1-207ENST00000568691 SOGA1O94964 1423 aa22.54■■□□□ 1.2
VPS9D1-207ENST00000568691 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
VPS9D1-207ENST00000568691 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
VPS9D1-207ENST00000568691 CHMP7Q8WUX9 453 aaPredicted RBP22.49■■□□□ 1.19
VPS9D1-207ENST00000568691 MAGI1Q96QZ7 1491 aaPredicted RBP22.47■■□□□ 1.19
VPS9D1-207ENST00000568691 SYNJ2O15056 1496 aa22.43■■□□□ 1.18
VPS9D1-207ENST00000568691 FGD5Q6ZNL6 1462 aa22.43■■□□□ 1.18
VPS9D1-207ENST00000568691 WDR97A6NE52 1622 aa22.42■■□□□ 1.18
VPS9D1-207ENST00000568691 GRIN2BQ13224 1484 aa22.41■■□□□ 1.18
VPS9D1-207ENST00000568691 ERCC6L2Q5T890 1561 aa22.38■■□□□ 1.17
VPS9D1-207ENST00000568691 CUX1P39880 1505 aa22.35■■□□□ 1.17
VPS9D1-207ENST00000568691 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
VPS9D1-207ENST00000568691 KIF13AQ9H1H9 1805 aa22.18■■□□□ 1.14
VPS9D1-207ENST00000568691 CEP170Q5SW79 1584 aa22.18■■□□□ 1.14
VPS9D1-207ENST00000568691 ABCA5Q8WWZ7 1642 aa22.17■■□□□ 1.14
VPS9D1-207ENST00000568691 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
VPS9D1-207ENST00000568691 NUP160Q12769 1436 aa22.14■■□□□ 1.14
VPS9D1-207ENST00000568691 ILDR1Q86SU0 546 aaPredicted RBP22.14■■□□□ 1.13
VPS9D1-207ENST00000568691 ABCA10Q8WWZ4 1543 aa22.14■■□□□ 1.13
VPS9D1-207ENST00000568691 KDM4FA0A1W2PPD8 638 aa22.11■■□□□ 1.13
VPS9D1-207ENST00000568691 SHROOM2Q13796 1616 aa22.1■■□□□ 1.13
VPS9D1-207ENST00000568691 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
VPS9D1-207ENST00000568691 ABCC10Q5T3U5 1492 aa22■■□□□ 1.11
VPS9D1-207ENST00000568691 FAM69CQ0P6D2 419 aa21.97■■□□□ 1.11
VPS9D1-207ENST00000568691 PRG4Q92954 1404 aaPredicted RBP21.95■■□□□ 1.1
VPS9D1-207ENST00000568691 FHAD1B1AJZ9 1412 aa21.93■■□□□ 1.1
VPS9D1-207ENST00000568691 DIP2BQ9P265 1576 aa21.91■■□□□ 1.1
VPS9D1-207ENST00000568691 MAPKBP1O60336 1514 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms