RNA–Protein interactions for RNA: ENST00000568292.1

CDH3-207, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-207ENST00000568292 NISCHQ9Y2I1 1504 aa25.02■■□□□ 1.6
CDH3-207ENST00000568292 CCDC180Q9P1Z9 1646 aa22.24■■□□□ 1.15
CDH3-207ENST00000568292 ABCC9O60706 1549 aa22.01■■□□□ 1.11
CDH3-207ENST00000568292 DCAF8L2P0C7V8 631 aa21.15■□□□□ 0.98
CDH3-207ENST00000568292 RB1CC1Q8TDY2 1594 aa21.08■□□□□ 0.97
CDH3-207ENST00000568292 NACADO15069 1562 aa21.02■□□□□ 0.96
CDH3-207ENST00000568292 MYO15BQ96JP2 1530 aa20.83■□□□□ 0.93
CDH3-207ENST00000568292 ZCCHC6Q5VYS8 1495 aaKnown RBP20.76■□□□□ 0.91
CDH3-207ENST00000568292 DCAF1Q9Y4B6 1507 aa20.68■□□□□ 0.9
CDH3-207ENST00000568292 PABPN1Q86U42 306 aaKnown RBP eCLIP20.62■□□□□ 0.89
CDH3-207ENST00000568292 UNC13AQ9UPW8 1703 aa20.47■□□□□ 0.87
CDH3-207ENST00000568292 DNAJC5BQ9UF47 199 aa20.42■□□□□ 0.86
CDH3-207ENST00000568292 BICRAQ9NZM4 1560 aa20.4■□□□□ 0.86
CDH3-207ENST00000568292 SCRIBQ14160 1630 aa20.3■□□□□ 0.84
CDH3-207ENST00000568292 SHROOM4Q9ULL8 1493 aa20.19■□□□□ 0.82
CDH3-207ENST00000568292 EIF4G1Q04637 1599 aaKnown RBP19.89■□□□□ 0.77
CDH3-207ENST00000568292 CC2D2AQ9P2K1 1620 aa19.86■□□□□ 0.77
CDH3-207ENST00000568292 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
CDH3-207ENST00000568292 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
CDH3-207ENST00000568292 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
CDH3-207ENST00000568292 ATAD2BQ9ULI0 1458 aa19.4■□□□□ 0.7
CDH3-207ENST00000568292 BAZ1AQ9NRL2 1556 aaPredicted RBP19.4■□□□□ 0.7
CDH3-207ENST00000568292 SMARCA2P51531 1590 aa19.36■□□□□ 0.69
CDH3-207ENST00000568292 MROH2BQ7Z745 1585 aa19.27■□□□□ 0.68
CDH3-207ENST00000568292 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
CDH3-207ENST00000568292 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
CDH3-207ENST00000568292 PEG3Q9GZU2 1588 aa19.21■□□□□ 0.67
CDH3-207ENST00000568292 RSF1Q96T23 1441 aaPredicted RBP19.03■□□□□ 0.64
CDH3-207ENST00000568292 WIZO95785 1651 aa19.03■□□□□ 0.64
CDH3-207ENST00000568292 ERCC6Q03468 1493 aa19■□□□□ 0.63
CDH3-207ENST00000568292 NESP48681 1621 aa18.98■□□□□ 0.63
CDH3-207ENST00000568292 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
CDH3-207ENST00000568292 CADPSQ9ULU8 1353 aa18.89■□□□□ 0.61
CDH3-207ENST00000568292 PDS5BQ9NTI5 1447 aa18.86■□□□□ 0.61
CDH3-207ENST00000568292 CUX2O14529 1486 aa18.84■□□□□ 0.61
CDH3-207ENST00000568292 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
CDH3-207ENST00000568292 CFTRP13569 1480 aa18.7■□□□□ 0.58
CDH3-207ENST00000568292 KIF21AQ7Z4S6 1674 aa18.67■□□□□ 0.58
CDH3-207ENST00000568292 CCDC88BA6NC98 1476 aa18.66■□□□□ 0.58
CDH3-207ENST00000568292 THOC2Q8NI27 1593 aaKnown RBP18.65■□□□□ 0.58
CDH3-207ENST00000568292 FANCD2Q9BXW9 1451 aa18.63■□□□□ 0.57
CDH3-207ENST00000568292 MRC2Q9UBG0 1479 aa18.61■□□□□ 0.57
CDH3-207ENST00000568292 CEP164Q9UPV0 1460 aa18.61■□□□□ 0.57
CDH3-207ENST00000568292 DNAJC5Q9H3Z4 198 aa18.56■□□□□ 0.56
CDH3-207ENST00000568292 SUPT5HO00267 1087 aaKnown RBP18.53■□□□□ 0.56
CDH3-207ENST00000568292 WDR62O43379 1518 aa18.51■□□□□ 0.55
CDH3-207ENST00000568292 URB2Q14146 1524 aaKnown RBP18.42■□□□□ 0.54
CDH3-207ENST00000568292 PRDM2Q13029 1718 aa18.4■□□□□ 0.54
CDH3-207ENST00000568292 ABCC8Q09428 1581 aa18.34■□□□□ 0.53
CDH3-207ENST00000568292 TOPBP1Q92547 1522 aa18.29■□□□□ 0.52
CDH3-207ENST00000568292 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
CDH3-207ENST00000568292 DNMBPQ6XZF7 1577 aa18.24■□□□□ 0.51
CDH3-207ENST00000568292 OSCARQ8IYS5 282 aa18.16■□□□□ 0.5
CDH3-207ENST00000568292 ZNF608Q9ULD9 1512 aaPredicted RBP18.15■□□□□ 0.5
CDH3-207ENST00000568292 SOGA1O94964 1423 aa18.13■□□□□ 0.49
CDH3-207ENST00000568292 POLA1P09884 1462 aaPredicted RBP18.12■□□□□ 0.49
CDH3-207ENST00000568292 CUX1P39880 1505 aa18.08■□□□□ 0.48
CDH3-207ENST00000568292 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
CDH3-207ENST00000568292 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
CDH3-207ENST00000568292 TARBP1Q13395 1621 aaKnown RBP18.06■□□□□ 0.48
CDH3-207ENST00000568292 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
CDH3-207ENST00000568292 TDRD9Q8NDG6 1382 aaKnown RBP18.04■□□□□ 0.48
CDH3-207ENST00000568292 EIF4G3O43432 1585 aaKnown RBP18■□□□□ 0.47
CDH3-207ENST00000568292 FBLN2P98095 1184 aa17.98■□□□□ 0.47
CDH3-207ENST00000568292 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
CDH3-207ENST00000568292 WDR97A6NE52 1622 aa17.92■□□□□ 0.46
CDH3-207ENST00000568292 CHMP7Q8WUX9 453 aaPredicted RBP17.9■□□□□ 0.46
CDH3-207ENST00000568292 GRIN2BQ13224 1484 aa17.89■□□□□ 0.45
CDH3-207ENST00000568292 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
CDH3-207ENST00000568292 GAPVD1Q14C86 1478 aa17.88■□□□□ 0.45
CDH3-207ENST00000568292 TOP2BQ02880 1626 aa17.87■□□□□ 0.45
CDH3-207ENST00000568292 TRIM41Q8WV44 630 aa17.87■□□□□ 0.45
CDH3-207ENST00000568292 SNAPC4Q5SXM2 1469 aa17.86■□□□□ 0.45
CDH3-207ENST00000568292 BIVM-ERCC5R4GMW8 1640 aa17.84■□□□□ 0.45
CDH3-207ENST00000568292 MAGI1Q96QZ7 1491 aaPredicted RBP17.84■□□□□ 0.45
CDH3-207ENST00000568292 SYNJ1O43426 1573 aa17.83■□□□□ 0.45
CDH3-207ENST00000568292 CHD1O14646 1710 aa17.79■□□□□ 0.44
CDH3-207ENST00000568292 SYNJ2O15056 1496 aa17.78■□□□□ 0.44
CDH3-207ENST00000568292 ABCA5Q8WWZ7 1642 aa17.76■□□□□ 0.43
CDH3-207ENST00000568292 PBRM1Q86U86 1689 aa17.73■□□□□ 0.43
CDH3-207ENST00000568292 RIMBP3CA6NJZ7 1639 aa17.72■□□□□ 0.43
CDH3-207ENST00000568292 RIMBP3BA6NNM3 1639 aa17.72■□□□□ 0.43
CDH3-207ENST00000568292 RIMBP3Q9UFD9 1639 aa17.72■□□□□ 0.43
CDH3-207ENST00000568292 ARHGEF11O15085 1522 aa17.71■□□□□ 0.43
CDH3-207ENST00000568292 CYB5RLQ6IPT4 315 aa17.7■□□□□ 0.42
CDH3-207ENST00000568292 FHAD1B1AJZ9 1412 aa17.67■□□□□ 0.42
CDH3-207ENST00000568292 ERICH3Q5RHP9 1530 aa17.67■□□□□ 0.42
CDH3-207ENST00000568292 CLASP1Q7Z460 1538 aa17.63■□□□□ 0.41
CDH3-207ENST00000568292 GRIN2AQ12879 1464 aa17.63■□□□□ 0.41
CDH3-207ENST00000568292 KIF27Q86VH2 1401 aa17.61■□□□□ 0.41
CDH3-207ENST00000568292 ADAMTS12P58397 1594 aa17.6■□□□□ 0.41
CDH3-207ENST00000568292 IGF1RP08069 1367 aa17.59■□□□□ 0.41
CDH3-207ENST00000568292 NUP160Q12769 1436 aa17.56■□□□□ 0.4
CDH3-207ENST00000568292 ARAP1Q96P48 1450 aa17.56■□□□□ 0.4
CDH3-207ENST00000568292 CEP170Q5SW79 1584 aa17.51■□□□□ 0.39
CDH3-207ENST00000568292 JPH4Q96JJ6 628 aa17.51■□□□□ 0.39
CDH3-207ENST00000568292 CARMIL1Q5VZK9 1371 aa17.49■□□□□ 0.39
CDH3-207ENST00000568292 AEBP2Q6ZN18 517 aaPredicted RBP17.45■□□□□ 0.38
CDH3-207ENST00000568292 CUL7Q14999 1698 aa17.43■□□□□ 0.38
CDH3-207ENST00000568292 PRG4Q92954 1404 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms