RNA–Protein interactions for RNA: ENST00000566560.5

KARS-207, Transcript of lysyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene KARS, Length 1,231 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KARS-207ENST00000566560 AEBP2Q6ZN18 517 aaPredicted RBP28.33■■■□□ 2.13
KARS-207ENST00000566560 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
KARS-207ENST00000566560 NISCHQ9Y2I1 1504 aa27.36■■□□□ 1.97
KARS-207ENST00000566560 PHF23Q9BUL5 403 aaPredicted RBP24.51■■□□□ 1.51
KARS-207ENST00000566560 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
KARS-207ENST00000566560 SENP3Q9H4L4 574 aaPredicted RBP24.05■■□□□ 1.44
KARS-207ENST00000566560 ABCC9O60706 1549 aa23.37■■□□□ 1.33
KARS-207ENST00000566560 ZCCHC6Q5VYS8 1495 aaKnown RBP22.91■■□□□ 1.26
KARS-207ENST00000566560 PLPPR3Q6T4P5 718 aa22.74■■□□□ 1.23
KARS-207ENST00000566560 NACADO15069 1562 aa22.69■■□□□ 1.22
KARS-207ENST00000566560 DCAF1Q9Y4B6 1507 aa22.67■■□□□ 1.22
KARS-207ENST00000566560 RB1CC1Q8TDY2 1594 aa22.65■■□□□ 1.22
KARS-207ENST00000566560 MYO15BQ96JP2 1530 aa22.64■■□□□ 1.21
KARS-207ENST00000566560 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
KARS-207ENST00000566560 FOXD1Q16676 465 aa22.27■■□□□ 1.16
KARS-207ENST00000566560 UNC13AQ9UPW8 1703 aa22.2■■□□□ 1.14
KARS-207ENST00000566560 SCRIBQ14160 1630 aa22.17■■□□□ 1.14
KARS-207ENST00000566560 BICRAQ9NZM4 1560 aa21.94■■□□□ 1.1
KARS-207ENST00000566560 PABPN1Q86U42 306 aaKnown RBP eCLIP21.82■■□□□ 1.08
KARS-207ENST00000566560 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
KARS-207ENST00000566560 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
KARS-207ENST00000566560 ADRA2BP18089 450 aa21.55■■□□□ 1.04
KARS-207ENST00000566560 EIF4G1Q04637 1599 aaKnown RBP21.35■■□□□ 1.01
KARS-207ENST00000566560 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
KARS-207ENST00000566560 SMARCA4P51532 1647 aa21.22■□□□□ 0.99
KARS-207ENST00000566560 BAZ1AQ9NRL2 1556 aaPredicted RBP21.22■□□□□ 0.99
KARS-207ENST00000566560 CC2D2AQ9P2K1 1620 aa21.18■□□□□ 0.98
KARS-207ENST00000566560 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
KARS-207ENST00000566560 PIAS4Q8N2W9 510 aaPredicted RBP21.05■□□□□ 0.96
KARS-207ENST00000566560 DNAJC5BQ9UF47 199 aa21.04■□□□□ 0.96
KARS-207ENST00000566560 SMARCA2P51531 1590 aa21■□□□□ 0.95
KARS-207ENST00000566560 PEG3Q9GZU2 1588 aa20.98■□□□□ 0.95
KARS-207ENST00000566560 ATAD2BQ9ULI0 1458 aa20.96■□□□□ 0.95
KARS-207ENST00000566560 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.94
KARS-207ENST00000566560 WIZO95785 1651 aa20.93■□□□□ 0.94
KARS-207ENST00000566560 HMGXB3Q12766 1538 aa20.88■□□□□ 0.93
KARS-207ENST00000566560 NCAPD3P42695 1498 aa20.88■□□□□ 0.93
KARS-207ENST00000566560 BAZ1BQ9UIG0 1483 aaKnown RBP20.84■□□□□ 0.93
KARS-207ENST00000566560 TOP2AP11388 1531 aaKnown RBP20.73■□□□□ 0.91
KARS-207ENST00000566560 SUPT5HO00267 1087 aaKnown RBP20.61■□□□□ 0.89
KARS-207ENST00000566560 MSH5O43196 834 aa20.5■□□□□ 0.87
KARS-207ENST00000566560 CCDC88BA6NC98 1476 aa20.42■□□□□ 0.86
KARS-207ENST00000566560 LAMC3Q9Y6N6 1575 aa20.34■□□□□ 0.85
KARS-207ENST00000566560 NESP48681 1621 aa20.31■□□□□ 0.84
KARS-207ENST00000566560 CADPSQ9ULU8 1353 aa20.28■□□□□ 0.84
KARS-207ENST00000566560 PRDM2Q13029 1718 aa20.27■□□□□ 0.83
KARS-207ENST00000566560 CFTRP13569 1480 aa20.25■□□□□ 0.83
KARS-207ENST00000566560 KIF21AQ7Z4S6 1674 aa20.16■□□□□ 0.82
KARS-207ENST00000566560 ERCC6Q03468 1493 aa20.14■□□□□ 0.81
KARS-207ENST00000566560 PDS5BQ9NTI5 1447 aa20.14■□□□□ 0.81
KARS-207ENST00000566560 FANCD2Q9BXW9 1451 aa20.1■□□□□ 0.81
KARS-207ENST00000566560 CEP164Q9UPV0 1460 aa20.06■□□□□ 0.8
KARS-207ENST00000566560 PPP4R3CPQ6ZMV5 832 aa20.03■□□□□ 0.8
KARS-207ENST00000566560 THOC2Q8NI27 1593 aaKnown RBP20.01■□□□□ 0.79
KARS-207ENST00000566560 MRC2Q9UBG0 1479 aa19.97■□□□□ 0.79
KARS-207ENST00000566560 WDR62O43379 1518 aa19.92■□□□□ 0.78
KARS-207ENST00000566560 URB2Q14146 1524 aaKnown RBP19.87■□□□□ 0.77
KARS-207ENST00000566560 DNMBPQ6XZF7 1577 aa19.86■□□□□ 0.77
KARS-207ENST00000566560 ABCC8Q09428 1581 aa19.83■□□□□ 0.77
KARS-207ENST00000566560 TOPBP1Q92547 1522 aa19.81■□□□□ 0.76
KARS-207ENST00000566560 CUX2O14529 1486 aa19.8■□□□□ 0.76
KARS-207ENST00000566560 CUX1P39880 1505 aa19.79■□□□□ 0.76
KARS-207ENST00000566560 SCAF1Q9H7N4 1312 aaKnown RBP19.77■□□□□ 0.76
KARS-207ENST00000566560 WRNQ14191 1432 aaPredicted RBP eCLIP19.77■□□□□ 0.76
KARS-207ENST00000566560 KCNA4P22459 653 aa19.76■□□□□ 0.75
KARS-207ENST00000566560 BIVM-ERCC5R4GMW8 1640 aa19.75■□□□□ 0.75
KARS-207ENST00000566560 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
KARS-207ENST00000566560 TOP2BQ02880 1626 aa19.73■□□□□ 0.75
KARS-207ENST00000566560 FGD5Q6ZNL6 1462 aa19.68■□□□□ 0.74
KARS-207ENST00000566560 POLA1P09884 1462 aaPredicted RBP19.67■□□□□ 0.74
KARS-207ENST00000566560 IFT140Q96RY7 1462 aa19.61■□□□□ 0.73
KARS-207ENST00000566560 TARBP1Q13395 1621 aaKnown RBP19.59■□□□□ 0.73
KARS-207ENST00000566560 NCBP3Q53F19 620 aaKnown RBP19.59■□□□□ 0.73
KARS-207ENST00000566560 WDR97A6NE52 1622 aa19.58■□□□□ 0.72
KARS-207ENST00000566560 RAD54L2Q9Y4B4 1467 aa19.56■□□□□ 0.72
KARS-207ENST00000566560 SOGA1O94964 1423 aa19.54■□□□□ 0.72
KARS-207ENST00000566560 EIF4G3O43432 1585 aaKnown RBP19.5■□□□□ 0.71
KARS-207ENST00000566560 ABCA10Q8WWZ4 1543 aa19.5■□□□□ 0.71
KARS-207ENST00000566560 MAPK8IP2Q13387 824 aaPredicted RBP19.49■□□□□ 0.71
KARS-207ENST00000566560 ZNF608Q9ULD9 1512 aaPredicted RBP19.48■□□□□ 0.71
KARS-207ENST00000566560 CNKSR2Q8WXI2 1034 aa19.46■□□□□ 0.71
KARS-207ENST00000566560 ABCA5Q8WWZ7 1642 aa19.44■□□□□ 0.7
KARS-207ENST00000566560 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
KARS-207ENST00000566560 PBRM1Q86U86 1689 aa19.4■□□□□ 0.7
KARS-207ENST00000566560 TDRD9Q8NDG6 1382 aaKnown RBP19.39■□□□□ 0.69
KARS-207ENST00000566560 AQRO60306 1485 aaKnown RBP eCLIP19.38■□□□□ 0.694e-6■■□□□ 13.4
KARS-207ENST00000566560 GAPVD1Q14C86 1478 aa19.36■□□□□ 0.69
KARS-207ENST00000566560 KIF27Q86VH2 1401 aa19.33■□□□□ 0.68
KARS-207ENST00000566560 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
KARS-207ENST00000566560 SNAPC4Q5SXM2 1469 aa19.28■□□□□ 0.68
KARS-207ENST00000566560 ERICH3Q5RHP9 1530 aa19.27■□□□□ 0.68
KARS-207ENST00000566560 NPM3O75607 178 aaKnown RBP19.27■□□□□ 0.68
KARS-207ENST00000566560 MAGI1Q96QZ7 1491 aaPredicted RBP19.26■□□□□ 0.67
KARS-207ENST00000566560 ADAMTS12P58397 1594 aa19.24■□□□□ 0.67
KARS-207ENST00000566560 RUSC2Q8N2Y8 1516 aa19.22■□□□□ 0.67
KARS-207ENST00000566560 CUL7Q14999 1698 aa19.21■□□□□ 0.67
KARS-207ENST00000566560 DMRT2Q9Y5R5 561 aa19.21■□□□□ 0.67
KARS-207ENST00000566560 CHD1O14646 1710 aa19.2■□□□□ 0.66
KARS-207ENST00000566560 EEA1Q15075 1411 aa19.17■□□□□ 0.66
KARS-207ENST00000566560 SYNJ2O15056 1496 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms