RNA–Protein interactions for RNA: ENST00000566370.1

LINC00563-201, long intergenic non-protein coding RNA 563, humanhuman

BASIC

Gene LINC00563, Length 1,400 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00563-201ENST00000566370 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
LINC00563-201ENST00000566370 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
LINC00563-201ENST00000566370 ZCCHC6Q5VYS8 1495 aaKnown RBP24.29■■□□□ 1.48
LINC00563-201ENST00000566370 DCAF1Q9Y4B6 1507 aa23.86■■□□□ 1.41
LINC00563-201ENST00000566370 SHROOM4Q9ULL8 1493 aa23.81■■□□□ 1.4
LINC00563-201ENST00000566370 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
LINC00563-201ENST00000566370 MYO15BQ96JP2 1530 aa23.39■■□□□ 1.34
LINC00563-201ENST00000566370 SUPT5HO00267 1087 aaKnown RBP23.22■■□□□ 1.31
LINC00563-201ENST00000566370 NACADO15069 1562 aa23.11■■□□□ 1.29
LINC00563-201ENST00000566370 ABCC9O60706 1549 aa23.02■■□□□ 1.28
LINC00563-201ENST00000566370 SCRIBQ14160 1630 aa22.95■■□□□ 1.26
LINC00563-201ENST00000566370 RB1CC1Q8TDY2 1594 aa22.82■■□□□ 1.24
LINC00563-201ENST00000566370 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
LINC00563-201ENST00000566370 RSF1Q96T23 1441 aaPredicted RBP22.49■■□□□ 1.19
LINC00563-201ENST00000566370 CHIC1Q5VXU3 224 aa22.46■■□□□ 1.19
LINC00563-201ENST00000566370 BAZ1AQ9NRL2 1556 aaPredicted RBP22.27■■□□□ 1.15
LINC00563-201ENST00000566370 UNC13AQ9UPW8 1703 aa22.25■■□□□ 1.15
LINC00563-201ENST00000566370 CECR2Q9BXF3 1484 aa22.22■■□□□ 1.15
LINC00563-201ENST00000566370 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.14
LINC00563-201ENST00000566370 WIZO95785 1651 aa22.07■■□□□ 1.12
LINC00563-201ENST00000566370 SMARCA4P51532 1647 aa22.04■■□□□ 1.12
LINC00563-201ENST00000566370 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
LINC00563-201ENST00000566370 BICRAQ9NZM4 1560 aa21.93■■□□□ 1.1
LINC00563-201ENST00000566370 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
LINC00563-201ENST00000566370 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
LINC00563-201ENST00000566370 PEG3Q9GZU2 1588 aa21.74■■□□□ 1.07
LINC00563-201ENST00000566370 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
LINC00563-201ENST00000566370 EIF4G1Q04637 1599 aaKnown RBP21.68■■□□□ 1.06
LINC00563-201ENST00000566370 CCDC88BA6NC98 1476 aa21.65■■□□□ 1.06
LINC00563-201ENST00000566370 LOC105371045A0A1W2PR82 267 aa21.55■■□□□ 1.04
LINC00563-201ENST00000566370 BAZ1BQ9UIG0 1483 aaKnown RBP21.5■■□□□ 1.03
LINC00563-201ENST00000566370 ATAD2BQ9ULI0 1458 aa21.5■■□□□ 1.03
LINC00563-201ENST00000566370 FAM9AQ8IZU1 332 aaPredicted RBP21.39■■□□□ 1.02
LINC00563-201ENST00000566370 ABCC8Q09428 1581 aa21.35■■□□□ 1.01
LINC00563-201ENST00000566370 HMGXB3Q12766 1538 aa21.33■■□□□ 1.01
LINC00563-201ENST00000566370 EEA1Q15075 1411 aa21.33■■□□□ 1
LINC00563-201ENST00000566370 NCAPD3P42695 1498 aa21.25■□□□□ 0.99
LINC00563-201ENST00000566370 PCGF6Q9BYE7 350 aa21.24■□□□□ 0.99
LINC00563-201ENST00000566370 WRNQ14191 1432 aaPredicted RBP eCLIP21.24■□□□□ 0.99
LINC00563-201ENST00000566370 TRIM26Q12899 539 aaPredicted RBP21.2■□□□□ 0.98
LINC00563-201ENST00000566370 HRCP23327 699 aa21.1■□□□□ 0.97
LINC00563-201ENST00000566370 SYNJ1O43426 1573 aa21.06■□□□□ 0.96
LINC00563-201ENST00000566370 CSRNP3Q8WYN3 585 aa21.04■□□□□ 0.96
LINC00563-201ENST00000566370 SOGA1O94964 1423 aa21.03■□□□□ 0.96
LINC00563-201ENST00000566370 EHMT2Q96KQ7 1210 aa21.03■□□□□ 0.96
LINC00563-201ENST00000566370 GOLGA3Q08378 1498 aa21.01■□□□□ 0.95
LINC00563-201ENST00000566370 TOP2BQ02880 1626 aa21■□□□□ 0.95
LINC00563-201ENST00000566370 TNIKQ9UKE5 1360 aa21■□□□□ 0.95
LINC00563-201ENST00000566370 BIVM-ERCC5R4GMW8 1640 aa20.99■□□□□ 0.95
LINC00563-201ENST00000566370 PRDM2Q13029 1718 aa20.98■□□□□ 0.95
LINC00563-201ENST00000566370 CEP164Q9UPV0 1460 aa20.95■□□□□ 0.94
LINC00563-201ENST00000566370 KIF21BO75037 1637 aa20.95■□□□□ 0.94
LINC00563-201ENST00000566370 CFTRP13569 1480 aa20.92■□□□□ 0.94
LINC00563-201ENST00000566370 CEP162Q5TB80 1403 aa20.9■□□□□ 0.94
LINC00563-201ENST00000566370 UBTFP17480 764 aaKnown RBP20.87■□□□□ 0.93
LINC00563-201ENST00000566370 RUSC2Q8N2Y8 1516 aa20.87■□□□□ 0.93
LINC00563-201ENST00000566370 CC2D2AQ9P2K1 1620 aa20.86■□□□□ 0.93
LINC00563-201ENST00000566370 ZEB1P37275 1124 aaPredicted RBP20.78■□□□□ 0.92
LINC00563-201ENST00000566370 CADPSQ9ULU8 1353 aa20.75■□□□□ 0.91
LINC00563-201ENST00000566370 CUX1P39880 1505 aa20.74■□□□□ 0.91
LINC00563-201ENST00000566370 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
LINC00563-201ENST00000566370 KIF27Q86VH2 1401 aa20.7■□□□□ 0.9
LINC00563-201ENST00000566370 CLIP1P30622 1438 aa20.65■□□□□ 0.9
LINC00563-201ENST00000566370 RAPGEF2Q9Y4G8 1499 aa20.61■□□□□ 0.89
LINC00563-201ENST00000566370 PRXQ9BXM0 1461 aa20.59■□□□□ 0.89
LINC00563-201ENST00000566370 VPS8Q8N3P4 1428 aa20.54■□□□□ 0.88
LINC00563-201ENST00000566370 FANCD2Q9BXW9 1451 aa20.54■□□□□ 0.88
LINC00563-201ENST00000566370 APLP2Q06481 763 aa20.53■□□□□ 0.88
LINC00563-201ENST00000566370 LAMC3Q9Y6N6 1575 aa20.53■□□□□ 0.88
LINC00563-201ENST00000566370 PPARGC1BQ86YN6 1023 aaKnown RBP20.51■□□□□ 0.87
LINC00563-201ENST00000566370 DNMBPQ6XZF7 1577 aa20.5■□□□□ 0.87
LINC00563-201ENST00000566370 FGD5Q6ZNL6 1462 aa20.48■□□□□ 0.87
LINC00563-201ENST00000566370 CUX2O14529 1486 aa20.47■□□□□ 0.87
LINC00563-201ENST00000566370 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
LINC00563-201ENST00000566370 PDS5BQ9NTI5 1447 aa20.36■□□□□ 0.85
LINC00563-201ENST00000566370 ABCA10Q8WWZ4 1543 aa20.33■□□□□ 0.85
LINC00563-201ENST00000566370 IGF1RP08069 1367 aa20.33■□□□□ 0.84
LINC00563-201ENST00000566370 CCER1Q8TC90 406 aaPredicted RBP20.31■□□□□ 0.84
LINC00563-201ENST00000566370 TTBK1Q5TCY1 1321 aaPredicted RBP20.31■□□□□ 0.84
LINC00563-201ENST00000566370 CARMIL1Q5VZK9 1371 aa20.31■□□□□ 0.84
LINC00563-201ENST00000566370 NESP48681 1621 aa20.3■□□□□ 0.84
LINC00563-201ENST00000566370 CUL7Q14999 1698 aa20.3■□□□□ 0.84
LINC00563-201ENST00000566370 POLA1P09884 1462 aaPredicted RBP20.29■□□□□ 0.84
LINC00563-201ENST00000566370 ARAP1Q96P48 1450 aa20.29■□□□□ 0.84
LINC00563-201ENST00000566370 RANGAP1P46060 587 aaPredicted RBP20.28■□□□□ 0.84
LINC00563-201ENST00000566370 WDR97A6NE52 1622 aa20.21■□□□□ 0.83
LINC00563-201ENST00000566370 ARHGAP35Q9NRY4 1499 aa20.2■□□□□ 0.82
LINC00563-201ENST00000566370 URB2Q14146 1524 aaKnown RBP20.19■□□□□ 0.82
LINC00563-201ENST00000566370 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
LINC00563-201ENST00000566370 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.17■□□□□ 0.82
LINC00563-201ENST00000566370 KIF21AQ7Z4S6 1674 aa20.16■□□□□ 0.82
LINC00563-201ENST00000566370 CTTNBP2Q8WZ74 1663 aa20.14■□□□□ 0.81
LINC00563-201ENST00000566370 EFCAB5A4FU69 1503 aa20.14■□□□□ 0.81
LINC00563-201ENST00000566370 FHAD1B1AJZ9 1412 aa20.13■□□□□ 0.81
LINC00563-201ENST00000566370 MAP3K1Q13233 1512 aa20.12■□□□□ 0.81
LINC00563-201ENST00000566370 ABCA5Q8WWZ7 1642 aa20.11■□□□□ 0.81
LINC00563-201ENST00000566370 GAPVD1Q14C86 1478 aa20.06■□□□□ 0.8
LINC00563-201ENST00000566370 MRC2Q9UBG0 1479 aa20.04■□□□□ 0.8
LINC00563-201ENST00000566370 TIAM1Q13009 1591 aa20.03■□□□□ 0.8
LINC00563-201ENST00000566370 HNRNPUL2Q1KMD3 747 aaKnown RBP20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms