RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NISCHQ9Y2I1 1504 aa22.6■■□□□ 1.21
VPS35-206ENST00000565228 CCDC180Q9P1Z9 1646 aa19.99■□□□□ 0.79
VPS35-206ENST00000565228 ABCC9O60706 1549 aa19.6■□□□□ 0.73
VPS35-206ENST00000565228 ZCCHC6Q5VYS8 1495 aaKnown RBP18.84■□□□□ 0.61
VPS35-206ENST00000565228 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
VPS35-206ENST00000565228 NACADO15069 1562 aa18.76■□□□□ 0.59
VPS35-206ENST00000565228 RB1CC1Q8TDY2 1594 aa18.76■□□□□ 0.59
VPS35-206ENST00000565228 MYO15BQ96JP2 1530 aa18.68■□□□□ 0.58
VPS35-206ENST00000565228 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.58
VPS35-206ENST00000565228 AEBP2Q6ZN18 517 aaPredicted RBP18.58■□□□□ 0.56
VPS35-206ENST00000565228 UNC13AQ9UPW8 1703 aa18.52■□□□□ 0.56
VPS35-206ENST00000565228 DNAJC5BQ9UF47 199 aa18.46■□□□□ 0.55
VPS35-206ENST00000565228 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
VPS35-206ENST00000565228 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
VPS35-206ENST00000565228 SCRIBQ14160 1630 aa18.33■□□□□ 0.52
VPS35-206ENST00000565228 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
VPS35-206ENST00000565228 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
VPS35-206ENST00000565228 CC2D2AQ9P2K1 1620 aa17.72■□□□□ 0.43
VPS35-206ENST00000565228 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
VPS35-206ENST00000565228 CHIC1Q5VXU3 224 aa17.68■□□□□ 0.42
VPS35-206ENST00000565228 SMARCA4P51532 1647 aa17.52■□□□□ 0.4
VPS35-206ENST00000565228 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
VPS35-206ENST00000565228 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
VPS35-206ENST00000565228 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
VPS35-206ENST00000565228 DNAJC5Q9H3Z4 198 aa17.41■□□□□ 0.38
VPS35-206ENST00000565228 NCAPD3P42695 1498 aa17.37■□□□□ 0.37
VPS35-206ENST00000565228 PEG3Q9GZU2 1588 aa17.35■□□□□ 0.37
VPS35-206ENST00000565228 WIZO95785 1651 aa17.3■□□□□ 0.36
VPS35-206ENST00000565228 SMARCA2P51531 1590 aa17.29■□□□□ 0.36
VPS35-206ENST00000565228 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.35
VPS35-206ENST00000565228 HMGXB3Q12766 1538 aa17.26■□□□□ 0.35
VPS35-206ENST00000565228 BAZ1BQ9UIG0 1483 aaKnown RBP17.21■□□□□ 0.35
VPS35-206ENST00000565228 NESP48681 1621 aa17.04■□□□□ 0.32
VPS35-206ENST00000565228 TOP2AP11388 1531 aaKnown RBP17.03■□□□□ 0.32
VPS35-206ENST00000565228 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
VPS35-206ENST00000565228 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
VPS35-206ENST00000565228 CADPSQ9ULU8 1353 aa16.85■□□□□ 0.29
VPS35-206ENST00000565228 SUPT5HO00267 1087 aaKnown RBP16.82■□□□□ 0.28
VPS35-206ENST00000565228 KIF21AQ7Z4S6 1674 aa16.8■□□□□ 0.28
VPS35-206ENST00000565228 CFTRP13569 1480 aa16.79■□□□□ 0.28
VPS35-206ENST00000565228 ERCC6Q03468 1493 aa16.75■□□□□ 0.27
VPS35-206ENST00000565228 THOC2Q8NI27 1593 aaKnown RBP16.72■□□□□ 0.27
VPS35-206ENST00000565228 PDS5BQ9NTI5 1447 aa16.69■□□□□ 0.26
VPS35-206ENST00000565228 CUX2O14529 1486 aa16.67■□□□□ 0.26
VPS35-206ENST00000565228 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
VPS35-206ENST00000565228 PRDM2Q13029 1718 aa16.65■□□□□ 0.26
VPS35-206ENST00000565228 MRC2Q9UBG0 1479 aa16.59■□□□□ 0.25
VPS35-206ENST00000565228 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
VPS35-206ENST00000565228 URB2Q14146 1524 aaKnown RBP16.57■□□□□ 0.24
VPS35-206ENST00000565228 WDR62O43379 1518 aa16.56■□□□□ 0.24
VPS35-206ENST00000565228 TOPBP1Q92547 1522 aa16.44■□□□□ 0.22
VPS35-206ENST00000565228 DNMBPQ6XZF7 1577 aa16.38■□□□□ 0.21
VPS35-206ENST00000565228 CUX1P39880 1505 aa16.38■□□□□ 0.21
VPS35-206ENST00000565228 ABCC8Q09428 1581 aa16.32■□□□□ 0.2
VPS35-206ENST00000565228 ZNF608Q9ULD9 1512 aaPredicted RBP16.3■□□□□ 0.2
VPS35-206ENST00000565228 POLA1P09884 1462 aaPredicted RBP16.3■□□□□ 0.2
VPS35-206ENST00000565228 TARBP1Q13395 1621 aaKnown RBP16.29■□□□□ 0.2
VPS35-206ENST00000565228 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
VPS35-206ENST00000565228 SYNJ1O43426 1573 aa16.27■□□□□ 0.2
VPS35-206ENST00000565228 FGD5Q6ZNL6 1462 aa16.27■□□□□ 0.19
VPS35-206ENST00000565228 TRIM41Q8WV44 630 aa16.25■□□□□ 0.19
VPS35-206ENST00000565228 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
VPS35-206ENST00000565228 WRNQ14191 1432 aaPredicted RBP eCLIP16.2■□□□□ 0.18
VPS35-206ENST00000565228 BIVM-ERCC5R4GMW8 1640 aa16.2■□□□□ 0.18
VPS35-206ENST00000565228 SOGA1O94964 1423 aa16.19■□□□□ 0.18
VPS35-206ENST00000565228 TOP2BQ02880 1626 aa16.19■□□□□ 0.18
VPS35-206ENST00000565228 AQRO60306 1485 aaKnown RBP eCLIP16.18■□□□□ 0.18
VPS35-206ENST00000565228 EIF4G3O43432 1585 aaKnown RBP16.17■□□□□ 0.18
VPS35-206ENST00000565228 WDR97A6NE52 1622 aa16.17■□□□□ 0.18
VPS35-206ENST00000565228 TDRD9Q8NDG6 1382 aaKnown RBP16.14■□□□□ 0.17
VPS35-206ENST00000565228 ABCA10Q8WWZ4 1543 aa16.09■□□□□ 0.17
VPS35-206ENST00000565228 ABCA5Q8WWZ7 1642 aa16.05■□□□□ 0.16
VPS35-206ENST00000565228 PBRM1Q86U86 1689 aa16.01■□□□□ 0.15
VPS35-206ENST00000565228 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
VPS35-206ENST00000565228 SNAPC4Q5SXM2 1469 aa16■□□□□ 0.15
VPS35-206ENST00000565228 CHD1O14646 1710 aa15.99■□□□□ 0.15
VPS35-206ENST00000565228 GRIN2BQ13224 1484 aa15.97■□□□□ 0.15
VPS35-206ENST00000565228 RUSC2Q8N2Y8 1516 aa15.91■□□□□ 0.14
VPS35-206ENST00000565228 MAGI1Q96QZ7 1491 aaPredicted RBP15.91■□□□□ 0.14
VPS35-206ENST00000565228 OSCARQ8IYS5 282 aa15.89■□□□□ 0.13
VPS35-206ENST00000565228 SENP3Q9H4L4 574 aaPredicted RBP15.89■□□□□ 0.13
VPS35-206ENST00000565228 ADAMTS12P58397 1594 aa15.88■□□□□ 0.13
VPS35-206ENST00000565228 SYNJ2O15056 1496 aa15.87■□□□□ 0.13
VPS35-206ENST00000565228 ERICH3Q5RHP9 1530 aa15.86■□□□□ 0.13
VPS35-206ENST00000565228 FBLN2P98095 1184 aa15.86■□□□□ 0.13
VPS35-206ENST00000565228 IGF1RP08069 1367 aa15.86■□□□□ 0.13
VPS35-206ENST00000565228 CLASP1Q7Z460 1538 aa15.81■□□□□ 0.12
VPS35-206ENST00000565228 KIF27Q86VH2 1401 aa15.81■□□□□ 0.12
VPS35-206ENST00000565228 CHMP7Q8WUX9 453 aaPredicted RBP15.81■□□□□ 0.12
VPS35-206ENST00000565228 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
VPS35-206ENST00000565228 CEP170Q5SW79 1584 aa15.79■□□□□ 0.12
VPS35-206ENST00000565228 GRIN2AQ12879 1464 aa15.79■□□□□ 0.12
VPS35-206ENST00000565228 NUP160Q12769 1436 aa15.76■□□□□ 0.11
VPS35-206ENST00000565228 RIMBP3CA6NJZ7 1639 aa15.74■□□□□ 0.11
VPS35-206ENST00000565228 RIMBP3BA6NNM3 1639 aa15.74■□□□□ 0.11
VPS35-206ENST00000565228 RIMBP3Q9UFD9 1639 aa15.74■□□□□ 0.11
VPS35-206ENST00000565228 ARHGEF11O15085 1522 aa15.72■□□□□ 0.11
VPS35-206ENST00000565228 CUL7Q14999 1698 aa15.71■□□□□ 0.11
VPS35-206ENST00000565228 CARMIL1Q5VZK9 1371 aa15.7■□□□□ 0.1
VPS35-206ENST00000565228 ERCC6L2Q5T890 1561 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms