RNA–Protein interactions for RNA: ENST00000564587.5

COMMD4-210, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-210ENST00000564587 NISCHQ9Y2I1 1504 aa35.12■■■■□ 3.21
COMMD4-210ENST00000564587 CCDC180Q9P1Z9 1646 aa30.7■■■□□ 2.51
COMMD4-210ENST00000564587 ZCCHC6Q5VYS8 1495 aaKnown RBP29.5■■■□□ 2.31
COMMD4-210ENST00000564587 DCAF1Q9Y4B6 1507 aa29.15■■■□□ 2.26
COMMD4-210ENST00000564587 DCAF8L2P0C7V8 631 aa28.89■■■□□ 2.22
COMMD4-210ENST00000564587 MYO15BQ96JP2 1530 aa28.84■■■□□ 2.21
COMMD4-210ENST00000564587 ABCC9O60706 1549 aa28.84■■■□□ 2.21
COMMD4-210ENST00000564587 NACADO15069 1562 aa28.6■■■□□ 2.17
COMMD4-210ENST00000564587 SHROOM4Q9ULL8 1493 aa28.46■■■□□ 2.15
COMMD4-210ENST00000564587 RB1CC1Q8TDY2 1594 aa28.33■■■□□ 2.12
COMMD4-210ENST00000564587 SCRIBQ14160 1630 aa28.07■■■□□ 2.08
COMMD4-210ENST00000564587 DNAJC5BQ9UF47 199 aa27.86■■■□□ 2.05
COMMD4-210ENST00000564587 UNC13AQ9UPW8 1703 aa27.62■■■□□ 2.01
COMMD4-210ENST00000564587 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
COMMD4-210ENST00000564587 BICRAQ9NZM4 1560 aa27.35■■□□□ 1.97
COMMD4-210ENST00000564587 RSF1Q96T23 1441 aaPredicted RBP27.22■■□□□ 1.95
COMMD4-210ENST00000564587 CECR2Q9BXF3 1484 aa27.18■■□□□ 1.94
COMMD4-210ENST00000564587 BAZ1AQ9NRL2 1556 aaPredicted RBP27.17■■□□□ 1.94
COMMD4-210ENST00000564587 PABPN1Q86U42 306 aaKnown RBP eCLIP27.16■■□□□ 1.94
COMMD4-210ENST00000564587 MROH2BQ7Z745 1585 aa27.05■■□□□ 1.92
COMMD4-210ENST00000564587 SMARCA4P51532 1647 aa26.98■■□□□ 1.91
COMMD4-210ENST00000564587 WIZO95785 1651 aa26.82■■□□□ 1.88
COMMD4-210ENST00000564587 PEG3Q9GZU2 1588 aa26.71■■□□□ 1.87
COMMD4-210ENST00000564587 TOP2AP11388 1531 aaKnown RBP26.65■■□□□ 1.86
COMMD4-210ENST00000564587 SMARCA2P51531 1590 aa26.6■■□□□ 1.85
COMMD4-210ENST00000564587 EIF4G1Q04637 1599 aaKnown RBP26.56■■□□□ 1.84
COMMD4-210ENST00000564587 ATAD2BQ9ULI0 1458 aa26.54■■□□□ 1.84
COMMD4-210ENST00000564587 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
COMMD4-210ENST00000564587 CHIC1Q5VXU3 224 aa26.37■■□□□ 1.81
COMMD4-210ENST00000564587 NCAPD3P42695 1498 aa26.36■■□□□ 1.81
COMMD4-210ENST00000564587 HMGXB3Q12766 1538 aa26.34■■□□□ 1.81
COMMD4-210ENST00000564587 CCDC88BA6NC98 1476 aa26.32■■□□□ 1.8
COMMD4-210ENST00000564587 DNAJC5Q9H3Z4 198 aa26.17■■□□□ 1.78
COMMD4-210ENST00000564587 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.78
COMMD4-210ENST00000564587 TRIM41Q8WV44 630 aa25.94■■□□□ 1.74
COMMD4-210ENST00000564587 CFTRP13569 1480 aa25.76■■□□□ 1.71
COMMD4-210ENST00000564587 ABCC8Q09428 1581 aa25.69■■□□□ 1.7
COMMD4-210ENST00000564587 CADPSQ9ULU8 1353 aa25.68■■□□□ 1.7
COMMD4-210ENST00000564587 PRDM2Q13029 1718 aa25.66■■□□□ 1.7
COMMD4-210ENST00000564587 WRNQ14191 1432 aaPredicted RBP eCLIP25.65■■□□□ 1.7
COMMD4-210ENST00000564587 LAMC3Q9Y6N6 1575 aa25.48■■□□□ 1.67
COMMD4-210ENST00000564587 SYNJ1O43426 1573 aa25.47■■□□□ 1.67
COMMD4-210ENST00000564587 TOP2BQ02880 1626 aa25.45■■□□□ 1.67
COMMD4-210ENST00000564587 BIVM-ERCC5R4GMW8 1640 aa25.43■■□□□ 1.66
COMMD4-210ENST00000564587 EEA1Q15075 1411 aa25.43■■□□□ 1.66
COMMD4-210ENST00000564587 FANCD2Q9BXW9 1451 aa25.35■■□□□ 1.65
COMMD4-210ENST00000564587 FAM9AQ8IZU1 332 aaPredicted RBP25.32■■□□□ 1.64
COMMD4-210ENST00000564587 CUX1P39880 1505 aa25.32■■□□□ 1.64
COMMD4-210ENST00000564587 PDS5BQ9NTI5 1447 aa25.29■■□□□ 1.64
COMMD4-210ENST00000564587 NESP48681 1621 aa25.28■■□□□ 1.64
COMMD4-210ENST00000564587 LOC105371045A0A1W2PR82 267 aa25.25■■□□□ 1.63
COMMD4-210ENST00000564587 SOGA1O94964 1423 aa25.24■■□□□ 1.63
COMMD4-210ENST00000564587 CEP164Q9UPV0 1460 aa25.21■■□□□ 1.63
COMMD4-210ENST00000564587 CSRNP3Q8WYN3 585 aa25.18■■□□□ 1.62
COMMD4-210ENST00000564587 DNMBPQ6XZF7 1577 aa25.17■■□□□ 1.62
COMMD4-210ENST00000564587 RUSC2Q8N2Y8 1516 aa25.1■■□□□ 1.61
COMMD4-210ENST00000564587 TOPBP1Q92547 1522 aa25.07■■□□□ 1.6
COMMD4-210ENST00000564587 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
COMMD4-210ENST00000564587 KIF27Q86VH2 1401 aa25.05■■□□□ 1.6
COMMD4-210ENST00000564587 KIF21AQ7Z4S6 1674 aa25.04■■□□□ 1.6
COMMD4-210ENST00000564587 CUX2O14529 1486 aa25.03■■□□□ 1.6
COMMD4-210ENST00000564587 KIF21BO75037 1637 aa25.01■■□□□ 1.59
COMMD4-210ENST00000564587 URB2Q14146 1524 aaKnown RBP24.98■■□□□ 1.59
COMMD4-210ENST00000564587 GOLGA3Q08378 1498 aa24.98■■□□□ 1.59
COMMD4-210ENST00000564587 POLA1P09884 1462 aaPredicted RBP24.94■■□□□ 1.58
COMMD4-210ENST00000564587 ERCC6Q03468 1493 aa24.93■■□□□ 1.58
COMMD4-210ENST00000564587 TNIKQ9UKE5 1360 aa24.93■■□□□ 1.58
COMMD4-210ENST00000564587 MRC2Q9UBG0 1479 aa24.92■■□□□ 1.58
COMMD4-210ENST00000564587 ABCA10Q8WWZ4 1543 aa24.9■■□□□ 1.58
COMMD4-210ENST00000564587 ERICH3Q5RHP9 1530 aa24.86■■□□□ 1.57
COMMD4-210ENST00000564587 PRXQ9BXM0 1461 aa24.84■■□□□ 1.57
COMMD4-210ENST00000564587 EHMT2Q96KQ7 1210 aa24.84■■□□□ 1.57
COMMD4-210ENST00000564587 UBTFP17480 764 aaKnown RBP24.83■■□□□ 1.57
COMMD4-210ENST00000564587 RAD54L2Q9Y4B4 1467 aa24.8■■□□□ 1.56
COMMD4-210ENST00000564587 WDR62O43379 1518 aa24.78■■□□□ 1.56
COMMD4-210ENST00000564587 IGF1RP08069 1367 aa24.77■■□□□ 1.56
COMMD4-210ENST00000564587 WDR97A6NE52 1622 aa24.76■■□□□ 1.55
COMMD4-210ENST00000564587 RAPGEF2Q9Y4G8 1499 aa24.75■■□□□ 1.55
COMMD4-210ENST00000564587 CEP162Q5TB80 1403 aa24.71■■□□□ 1.55
COMMD4-210ENST00000564587 TARBP1Q13395 1621 aaKnown RBP24.68■■□□□ 1.54
COMMD4-210ENST00000564587 CARMIL1Q5VZK9 1371 aa24.67■■□□□ 1.54
COMMD4-210ENST00000564587 IFT140Q96RY7 1462 aa24.65■■□□□ 1.54
COMMD4-210ENST00000564587 ABCA5Q8WWZ7 1642 aa24.65■■□□□ 1.54
COMMD4-210ENST00000564587 THOC2Q8NI27 1593 aaKnown RBP24.65■■□□□ 1.54
COMMD4-210ENST00000564587 CUL7Q14999 1698 aa24.65■■□□□ 1.54
COMMD4-210ENST00000564587 GAPVD1Q14C86 1478 aa24.63■■□□□ 1.53
COMMD4-210ENST00000564587 TDRD9Q8NDG6 1382 aaKnown RBP24.57■■□□□ 1.52
COMMD4-210ENST00000564587 CLIP1P30622 1438 aa24.55■■□□□ 1.52
COMMD4-210ENST00000564587 GRIN2BQ13224 1484 aa24.46■■□□□ 1.51
COMMD4-210ENST00000564587 PBRM1Q86U86 1689 aa24.46■■□□□ 1.51
COMMD4-210ENST00000564587 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.5
COMMD4-210ENST00000564587 FHAD1B1AJZ9 1412 aa24.4■■□□□ 1.5
COMMD4-210ENST00000564587 VPS8Q8N3P4 1428 aa24.35■■□□□ 1.49
COMMD4-210ENST00000564587 ZNF608Q9ULD9 1512 aaPredicted RBP24.35■■□□□ 1.49
COMMD4-210ENST00000564587 EIF4G3O43432 1585 aaKnown RBP24.33■■□□□ 1.49
COMMD4-210ENST00000564587 ADAMTS12P58397 1594 aa24.33■■□□□ 1.49
COMMD4-210ENST00000564587 CTTNBP2Q8WZ74 1663 aa24.33■■□□□ 1.49
COMMD4-210ENST00000564587 TRIM26Q12899 539 aaPredicted RBP24.3■■□□□ 1.48
COMMD4-210ENST00000564587 MAGI1Q96QZ7 1491 aaPredicted RBP24.27■■□□□ 1.48
COMMD4-210ENST00000564587 ARHGAP35Q9NRY4 1499 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms