RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 NISCHQ9Y2I1 1504 aa40.15■■■■■ 4.02
RNF40-206ENST00000564260 CCDC180Q9P1Z9 1646 aa35.65■■■■□ 3.3
RNF40-206ENST00000564260 ABCC9O60706 1549 aa34.45■■■■□ 3.11
RNF40-206ENST00000564260 ZCCHC6Q5VYS8 1495 aaKnown RBP33.51■■■□□ 2.96
RNF40-206ENST00000564260 NACADO15069 1562 aa33.5■■■□□ 2.95
RNF40-206ENST00000564260 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
RNF40-206ENST00000564260 RB1CC1Q8TDY2 1594 aa33.43■■■□□ 2.94
RNF40-206ENST00000564260 DCAF1Q9Y4B6 1507 aa33.39■■■□□ 2.94
RNF40-206ENST00000564260 DCAF8L2P0C7V8 631 aa33.23■■■□□ 2.91
RNF40-206ENST00000564260 UNC13AQ9UPW8 1703 aa32.46■■■□□ 2.79
RNF40-206ENST00000564260 SCRIBQ14160 1630 aa32.35■■■□□ 2.77
RNF40-206ENST00000564260 BICRAQ9NZM4 1560 aa32.3■■■□□ 2.76
RNF40-206ENST00000564260 SHROOM4Q9ULL8 1493 aa32.29■■■□□ 2.76
RNF40-206ENST00000564260 PABPN1Q86U42 306 aaKnown RBP eCLIP32.19■■■□□ 2.74
RNF40-206ENST00000564260 EIF4G1Q04637 1599 aaKnown RBP31.47■■■□□ 2.63
RNF40-206ENST00000564260 DNAJC5BQ9UF47 199 aa31.34■■■□□ 2.61
RNF40-206ENST00000564260 CC2D2AQ9P2K1 1620 aa31.24■■■□□ 2.59
RNF40-206ENST00000564260 BAZ1AQ9NRL2 1556 aaPredicted RBP31.15■■■□□ 2.58
RNF40-206ENST00000564260 CECR2Q9BXF3 1484 aa31.12■■■□□ 2.57
RNF40-206ENST00000564260 SMARCA4P51532 1647 aa31.07■■■□□ 2.56
RNF40-206ENST00000564260 SMARCA2P51531 1590 aa30.92■■■□□ 2.54
RNF40-206ENST00000564260 NCAPD3P42695 1498 aa30.89■■■□□ 2.54
RNF40-206ENST00000564260 PEG3Q9GZU2 1588 aa30.88■■■□□ 2.53
RNF40-206ENST00000564260 ATAD2BQ9ULI0 1458 aa30.88■■■□□ 2.53
RNF40-206ENST00000564260 MROH2BQ7Z745 1585 aa30.85■■■□□ 2.53
RNF40-206ENST00000564260 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
RNF40-206ENST00000564260 RSF1Q96T23 1441 aaPredicted RBP30.64■■■□□ 2.5
RNF40-206ENST00000564260 BAZ1BQ9UIG0 1483 aaKnown RBP30.63■■■□□ 2.49
RNF40-206ENST00000564260 WIZO95785 1651 aa30.48■■■□□ 2.47
RNF40-206ENST00000564260 TOP2AP11388 1531 aaKnown RBP30.32■■■□□ 2.44
RNF40-206ENST00000564260 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
RNF40-206ENST00000564260 CADPSQ9ULU8 1353 aa29.98■■■□□ 2.39
RNF40-206ENST00000564260 CCDC88BA6NC98 1476 aa29.89■■■□□ 2.38
RNF40-206ENST00000564260 SUPT5HO00267 1087 aaKnown RBP29.87■■■□□ 2.37
RNF40-206ENST00000564260 CFTRP13569 1480 aa29.86■■■□□ 2.37
RNF40-206ENST00000564260 NESP48681 1621 aa29.85■■■□□ 2.37
RNF40-206ENST00000564260 PDS5BQ9NTI5 1447 aa29.84■■■□□ 2.37
RNF40-206ENST00000564260 ERCC6Q03468 1493 aa29.77■■■□□ 2.36
RNF40-206ENST00000564260 FANCD2Q9BXW9 1451 aa29.58■■■□□ 2.33
RNF40-206ENST00000564260 PRDM2Q13029 1718 aa29.57■■■□□ 2.32
RNF40-206ENST00000564260 CEP164Q9UPV0 1460 aa29.55■■■□□ 2.32
RNF40-206ENST00000564260 KIF21AQ7Z4S6 1674 aa29.52■■■□□ 2.32
RNF40-206ENST00000564260 CUX2O14529 1486 aa29.5■■■□□ 2.31
RNF40-206ENST00000564260 THOC2Q8NI27 1593 aaKnown RBP29.47■■■□□ 2.31
RNF40-206ENST00000564260 MRC2Q9UBG0 1479 aa29.46■■■□□ 2.31
RNF40-206ENST00000564260 WDR62O43379 1518 aa29.36■■■□□ 2.29
RNF40-206ENST00000564260 ABCC8Q09428 1581 aa29.3■■■□□ 2.28
RNF40-206ENST00000564260 URB2Q14146 1524 aaKnown RBP29.22■■■□□ 2.27
RNF40-206ENST00000564260 DNMBPQ6XZF7 1577 aa29.14■■■□□ 2.26
RNF40-206ENST00000564260 TOPBP1Q92547 1522 aa29.12■■■□□ 2.25
RNF40-206ENST00000564260 IFT140Q96RY7 1462 aa28.96■■■□□ 2.23
RNF40-206ENST00000564260 CUX1P39880 1505 aa28.95■■■□□ 2.23
RNF40-206ENST00000564260 WRNQ14191 1432 aaPredicted RBP eCLIP28.91■■■□□ 2.22
RNF40-206ENST00000564260 POLA1P09884 1462 aaPredicted RBP28.89■■■□□ 2.22
RNF40-206ENST00000564260 FGD5Q6ZNL6 1462 aa28.83■■■□□ 2.21
RNF40-206ENST00000564260 TOP2BQ02880 1626 aa28.83■■■□□ 2.21
RNF40-206ENST00000564260 BIVM-ERCC5R4GMW8 1640 aa28.81■■■□□ 2.2
RNF40-206ENST00000564260 SOGA1O94964 1423 aa28.77■■■□□ 2.2
RNF40-206ENST00000564260 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
RNF40-206ENST00000564260 WDR97A6NE52 1622 aa28.76■■■□□ 2.2
RNF40-206ENST00000564260 SYNJ1O43426 1573 aa28.73■■■□□ 2.19
RNF40-206ENST00000564260 RAD54L2Q9Y4B4 1467 aa28.66■■■□□ 2.18
RNF40-206ENST00000564260 ABCA10Q8WWZ4 1543 aa28.65■■■□□ 2.18
RNF40-206ENST00000564260 ZNF608Q9ULD9 1512 aaPredicted RBP28.65■■■□□ 2.18
RNF40-206ENST00000564260 EIF4G3O43432 1585 aaKnown RBP28.6■■■□□ 2.17
RNF40-206ENST00000564260 AQRO60306 1485 aaKnown RBP eCLIP28.53■■■□□ 2.16
RNF40-206ENST00000564260 TDRD9Q8NDG6 1382 aaKnown RBP28.51■■■□□ 2.16
RNF40-206ENST00000564260 GRIN2BQ13224 1484 aa28.47■■■□□ 2.15
RNF40-206ENST00000564260 GAPVD1Q14C86 1478 aa28.47■■■□□ 2.15
RNF40-206ENST00000564260 ABCA5Q8WWZ7 1642 aa28.46■■■□□ 2.15
RNF40-206ENST00000564260 MAGI1Q96QZ7 1491 aaPredicted RBP28.4■■■□□ 2.14
RNF40-206ENST00000564260 ERICH3Q5RHP9 1530 aa28.34■■■□□ 2.13
RNF40-206ENST00000564260 TRIM41Q8WV44 630 aa28.34■■■□□ 2.13
RNF40-206ENST00000564260 KIF27Q86VH2 1401 aa28.34■■■□□ 2.13
RNF40-206ENST00000564260 SNAPC4Q5SXM2 1469 aa28.31■■■□□ 2.12
RNF40-206ENST00000564260 PBRM1Q86U86 1689 aa28.31■■■□□ 2.12
RNF40-206ENST00000564260 SYNJ2O15056 1496 aa28.26■■■□□ 2.11
RNF40-206ENST00000564260 OSCARQ8IYS5 282 aa28.25■■■□□ 2.11
RNF40-206ENST00000564260 DNAJC5Q9H3Z4 198 aa28.22■■■□□ 2.11
RNF40-206ENST00000564260 FHAD1B1AJZ9 1412 aa28.19■■■□□ 2.1
RNF40-206ENST00000564260 CHMP7Q8WUX9 453 aaPredicted RBP28.17■■■□□ 2.1
RNF40-206ENST00000564260 ADAMTS12P58397 1594 aa28.16■■■□□ 2.1
RNF40-206ENST00000564260 IGF1RP08069 1367 aa28.13■■■□□ 2.09
RNF40-206ENST00000564260 CHD1O14646 1710 aa28.11■■■□□ 2.09
RNF40-206ENST00000564260 FBLN2P98095 1184 aa28.1■■■□□ 2.09
RNF40-206ENST00000564260 CUL7Q14999 1698 aa28.1■■■□□ 2.09
RNF40-206ENST00000564260 CHIC1Q5VXU3 224 aa28.09■■■□□ 2.09
RNF40-206ENST00000564260 GRIN2AQ12879 1464 aa28.08■■■□□ 2.09
RNF40-206ENST00000564260 EEA1Q15075 1411 aa28.04■■■□□ 2.08
RNF40-206ENST00000564260 CARMIL1Q5VZK9 1371 aa27.99■■■□□ 2.07
RNF40-206ENST00000564260 NUP160Q12769 1436 aa27.98■■■□□ 2.07
RNF40-206ENST00000564260 CLASP1Q7Z460 1538 aa27.94■■■□□ 2.06
RNF40-206ENST00000564260 RUSC2Q8N2Y8 1516 aa27.92■■■□□ 2.06
RNF40-206ENST00000564260 RAPGEF2Q9Y4G8 1499 aa27.87■■■□□ 2.05
RNF40-206ENST00000564260 CEP170Q5SW79 1584 aa27.85■■■□□ 2.05
RNF40-206ENST00000564260 PRXQ9BXM0 1461 aa27.83■■■□□ 2.05
RNF40-206ENST00000564260 CSRNP3Q8WYN3 585 aa27.82■■■□□ 2.04
RNF40-206ENST00000564260 KIAA0586Q9BVV6 1533 aa27.77■■■□□ 2.04
RNF40-206ENST00000564260 ARHGEF11O15085 1522 aa27.74■■■□□ 2.03
RNF40-206ENST00000564260 SHROOM2Q13796 1616 aa27.7■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms