RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 NISCHQ9Y2I1 1504 aa32.46■■■□□ 2.79
CLK3-209ENST00000562670 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
CLK3-209ENST00000562670 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
CLK3-209ENST00000562670 DCAF1Q9Y4B6 1507 aa27■■□□□ 1.91
CLK3-209ENST00000562670 ABCC9O60706 1549 aa26.97■■□□□ 1.91
CLK3-209ENST00000562670 MYO15BQ96JP2 1530 aa26.83■■□□□ 1.89
CLK3-209ENST00000562670 NACADO15069 1562 aa26.63■■□□□ 1.85
CLK3-209ENST00000562670 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
CLK3-209ENST00000562670 RB1CC1Q8TDY2 1594 aa26.43■■□□□ 1.82
CLK3-209ENST00000562670 SCRIBQ14160 1630 aa26.01■■□□□ 1.75
CLK3-209ENST00000562670 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
CLK3-209ENST00000562670 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
CLK3-209ENST00000562670 BICRAQ9NZM4 1560 aa25.6■■□□□ 1.69
CLK3-209ENST00000562670 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
CLK3-209ENST00000562670 BAZ1AQ9NRL2 1556 aaPredicted RBP25.13■■□□□ 1.61
CLK3-209ENST00000562670 CECR2Q9BXF3 1484 aa25.11■■□□□ 1.61
CLK3-209ENST00000562670 SMARCA4P51532 1647 aa25.02■■□□□ 1.6
CLK3-209ENST00000562670 RSF1Q96T23 1441 aaPredicted RBP25.01■■□□□ 1.59
CLK3-209ENST00000562670 MROH2BQ7Z745 1585 aa24.99■■□□□ 1.59
CLK3-209ENST00000562670 EIF4G1Q04637 1599 aaKnown RBP24.85■■□□□ 1.57
CLK3-209ENST00000562670 PEG3Q9GZU2 1588 aa24.84■■□□□ 1.57
CLK3-209ENST00000562670 SUPT5HO00267 1087 aaKnown RBP24.79■■□□□ 1.56
CLK3-209ENST00000562670 WIZO95785 1651 aa24.74■■□□□ 1.55
CLK3-209ENST00000562670 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
CLK3-209ENST00000562670 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
CLK3-209ENST00000562670 TOP2AP11388 1531 aaKnown RBP24.61■■□□□ 1.53
CLK3-209ENST00000562670 HMGXB3Q12766 1538 aa24.56■■□□□ 1.52
CLK3-209ENST00000562670 NCAPD3P42695 1498 aa24.54■■□□□ 1.52
CLK3-209ENST00000562670 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
CLK3-209ENST00000562670 BAZ1BQ9UIG0 1483 aaKnown RBP24.49■■□□□ 1.51
CLK3-209ENST00000562670 CCDC88BA6NC98 1476 aa24.24■■□□□ 1.47
CLK3-209ENST00000562670 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
CLK3-209ENST00000562670 CFTRP13569 1480 aa23.9■■□□□ 1.42
CLK3-209ENST00000562670 PRDM2Q13029 1718 aa23.84■■□□□ 1.41
CLK3-209ENST00000562670 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
CLK3-209ENST00000562670 LAMC3Q9Y6N6 1575 aa23.78■■□□□ 1.4
CLK3-209ENST00000562670 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
CLK3-209ENST00000562670 NESP48681 1621 aa23.59■■□□□ 1.37
CLK3-209ENST00000562670 ABCC8Q09428 1581 aa23.58■■□□□ 1.37
CLK3-209ENST00000562670 WRNQ14191 1432 aaPredicted RBP eCLIP23.56■■□□□ 1.36
CLK3-209ENST00000562670 FANCD2Q9BXW9 1451 aa23.55■■□□□ 1.36
CLK3-209ENST00000562670 PDS5BQ9NTI5 1447 aa23.54■■□□□ 1.36
CLK3-209ENST00000562670 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
CLK3-209ENST00000562670 SYNJ1O43426 1573 aa23.47■■□□□ 1.35
CLK3-209ENST00000562670 TOP2BQ02880 1626 aa23.47■■□□□ 1.35
CLK3-209ENST00000562670 CEP164Q9UPV0 1460 aa23.46■■□□□ 1.35
CLK3-209ENST00000562670 TRIM41Q8WV44 630 aa23.44■■□□□ 1.34
CLK3-209ENST00000562670 CUX1P39880 1505 aa23.41■■□□□ 1.34
CLK3-209ENST00000562670 KIF21AQ7Z4S6 1674 aa23.4■■□□□ 1.34
CLK3-209ENST00000562670 DNMBPQ6XZF7 1577 aa23.36■■□□□ 1.33
CLK3-209ENST00000562670 TOPBP1Q92547 1522 aa23.28■■□□□ 1.32
CLK3-209ENST00000562670 MRC2Q9UBG0 1479 aa23.27■■□□□ 1.32
CLK3-209ENST00000562670 URB2Q14146 1524 aaKnown RBP23.27■■□□□ 1.32
CLK3-209ENST00000562670 ERCC6Q03468 1493 aa23.21■■□□□ 1.31
CLK3-209ENST00000562670 WDR62O43379 1518 aa23.2■■□□□ 1.3
CLK3-209ENST00000562670 FGD5Q6ZNL6 1462 aa23.18■■□□□ 1.3
CLK3-209ENST00000562670 EEA1Q15075 1411 aa23.18■■□□□ 1.3
CLK3-209ENST00000562670 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
CLK3-209ENST00000562670 POLA1P09884 1462 aaPredicted RBP23.14■■□□□ 1.29
CLK3-209ENST00000562670 SOGA1O94964 1423 aa23.07■■□□□ 1.28
CLK3-209ENST00000562670 ABCA10Q8WWZ4 1543 aa23.06■■□□□ 1.28
CLK3-209ENST00000562670 WDR97A6NE52 1622 aa23.04■■□□□ 1.28
CLK3-209ENST00000562670 KIF27Q86VH2 1401 aa23■■□□□ 1.27
CLK3-209ENST00000562670 TARBP1Q13395 1621 aaKnown RBP22.99■■□□□ 1.27
CLK3-209ENST00000562670 CUX2O14529 1486 aa22.97■■□□□ 1.27
CLK3-209ENST00000562670 RAD54L2Q9Y4B4 1467 aa22.96■■□□□ 1.27
CLK3-209ENST00000562670 RUSC2Q8N2Y8 1516 aa22.96■■□□□ 1.27
CLK3-209ENST00000562670 IFT140Q96RY7 1462 aa22.95■■□□□ 1.26
CLK3-209ENST00000562670 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
CLK3-209ENST00000562670 KIF21BO75037 1637 aa22.87■■□□□ 1.25
CLK3-209ENST00000562670 CSRNP3Q8WYN3 585 aa22.87■■□□□ 1.25
CLK3-209ENST00000562670 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
CLK3-209ENST00000562670 PRXQ9BXM0 1461 aa22.81■■□□□ 1.24
CLK3-209ENST00000562670 ERICH3Q5RHP9 1530 aa22.81■■□□□ 1.24
CLK3-209ENST00000562670 GAPVD1Q14C86 1478 aa22.79■■□□□ 1.24
CLK3-209ENST00000562670 CUL7Q14999 1698 aa22.77■■□□□ 1.24
CLK3-209ENST00000562670 IGF1RP08069 1367 aa22.77■■□□□ 1.24
CLK3-209ENST00000562670 GOLGA3Q08378 1498 aa22.76■■□□□ 1.23
CLK3-209ENST00000562670 EIF4G3O43432 1585 aaKnown RBP22.73■■□□□ 1.23
CLK3-209ENST00000562670 PBRM1Q86U86 1689 aa22.73■■□□□ 1.23
CLK3-209ENST00000562670 TDRD9Q8NDG6 1382 aaKnown RBP22.73■■□□□ 1.23
CLK3-209ENST00000562670 ZNF608Q9ULD9 1512 aaPredicted RBP22.71■■□□□ 1.23
CLK3-209ENST00000562670 GRIN2BQ13224 1484 aa22.7■■□□□ 1.22
CLK3-209ENST00000562670 RAPGEF2Q9Y4G8 1499 aa22.66■■□□□ 1.22
CLK3-209ENST00000562670 CARMIL1Q5VZK9 1371 aa22.65■■□□□ 1.22
CLK3-209ENST00000562670 AQRO60306 1485 aaKnown RBP eCLIP22.65■■□□□ 1.229e-8■■■■■ 31.4
CLK3-209ENST00000562670 LOC105371045A0A1W2PR82 267 aa22.64■■□□□ 1.21
CLK3-209ENST00000562670 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
CLK3-209ENST00000562670 TNIKQ9UKE5 1360 aa22.62■■□□□ 1.21
CLK3-209ENST00000562670 MAGI1Q96QZ7 1491 aaPredicted RBP22.59■■□□□ 1.21
CLK3-209ENST00000562670 FHAD1B1AJZ9 1412 aa22.58■■□□□ 1.21
CLK3-209ENST00000562670 SNAPC4Q5SXM2 1469 aa22.53■■□□□ 1.2
CLK3-209ENST00000562670 UBTFP17480 764 aaKnown RBP22.46■■□□□ 1.19
CLK3-209ENST00000562670 SYNJ2O15056 1496 aa22.46■■□□□ 1.19
CLK3-209ENST00000562670 CEP162Q5TB80 1403 aa22.44■■□□□ 1.18
CLK3-209ENST00000562670 CTTNBP2Q8WZ74 1663 aa22.42■■□□□ 1.18
CLK3-209ENST00000562670 GRIN2AQ12879 1464 aa22.41■■□□□ 1.18
CLK3-209ENST00000562670 EHMT2Q96KQ7 1210 aa22.39■■□□□ 1.17
CLK3-209ENST00000562670 CLIP1P30622 1438 aa22.32■■□□□ 1.16
CLK3-209ENST00000562670 NUP160Q12769 1436 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms