RNA–Protein interactions for RNA: ENST00000562307.1

CDH13-205, Transcript of cadherin 13, humanhuman

TSL 4

Gene CDH13, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-205ENST00000562307 NISCHQ9Y2I1 1504 aa21.61■■□□□ 1.05
CDH13-205ENST00000562307 CCDC180Q9P1Z9 1646 aa18.82■□□□□ 0.6
CDH13-205ENST00000562307 ZCCHC6Q5VYS8 1495 aaKnown RBP18.15■□□□□ 0.5
CDH13-205ENST00000562307 DCAF1Q9Y4B6 1507 aa17.93■□□□□ 0.46
CDH13-205ENST00000562307 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
CDH13-205ENST00000562307 ABCC9O60706 1549 aa17.72■□□□□ 0.43
CDH13-205ENST00000562307 MYO15BQ96JP2 1530 aa17.72■□□□□ 0.43
CDH13-205ENST00000562307 NACADO15069 1562 aa17.55■□□□□ 0.4
CDH13-205ENST00000562307 SHROOM4Q9ULL8 1493 aa17.53■□□□□ 0.4
CDH13-205ENST00000562307 RB1CC1Q8TDY2 1594 aa17.36■□□□□ 0.37
CDH13-205ENST00000562307 SCRIBQ14160 1630 aa17.24■□□□□ 0.35
CDH13-205ENST00000562307 UNC13AQ9UPW8 1703 aa16.94■□□□□ 0.3
CDH13-205ENST00000562307 SUPT5HO00267 1087 aaKnown RBP16.9■□□□□ 0.3
CDH13-205ENST00000562307 BICRAQ9NZM4 1560 aa16.85■□□□□ 0.29
CDH13-205ENST00000562307 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
CDH13-205ENST00000562307 CECR2Q9BXF3 1484 aa16.77■□□□□ 0.28
CDH13-205ENST00000562307 PABPN1Q86U42 306 aaKnown RBP eCLIP16.74■□□□□ 0.27
CDH13-205ENST00000562307 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
CDH13-205ENST00000562307 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
CDH13-205ENST00000562307 SMARCA4P51532 1647 aa16.58■□□□□ 0.24
CDH13-205ENST00000562307 WIZO95785 1651 aa16.5■□□□□ 0.23
CDH13-205ENST00000562307 PEG3Q9GZU2 1588 aa16.43■□□□□ 0.22
CDH13-205ENST00000562307 TOP2AP11388 1531 aaKnown RBP16.37■□□□□ 0.21
CDH13-205ENST00000562307 ATAD2BQ9ULI0 1458 aa16.34■□□□□ 0.21
CDH13-205ENST00000562307 EIF4G1Q04637 1599 aaKnown RBP16.32■□□□□ 0.2
CDH13-205ENST00000562307 SMARCA2P51531 1590 aa16.31■□□□□ 0.2
CDH13-205ENST00000562307 CHIC1Q5VXU3 224 aa16.27■□□□□ 0.2
CDH13-205ENST00000562307 NCAPD3P42695 1498 aa16.23■□□□□ 0.19
CDH13-205ENST00000562307 CCDC88BA6NC98 1476 aa16.22■□□□□ 0.19
CDH13-205ENST00000562307 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.19
CDH13-205ENST00000562307 HMGXB3Q12766 1538 aa16.17■□□□□ 0.18
CDH13-205ENST00000562307 CC2D2AQ9P2K1 1620 aa16.05■□□□□ 0.16
CDH13-205ENST00000562307 TRIM41Q8WV44 630 aa15.93■□□□□ 0.14
CDH13-205ENST00000562307 CFTRP13569 1480 aa15.85■□□□□ 0.13
CDH13-205ENST00000562307 ABCC8Q09428 1581 aa15.82■□□□□ 0.12
CDH13-205ENST00000562307 CADPSQ9ULU8 1353 aa15.79■□□□□ 0.12
CDH13-205ENST00000562307 WRNQ14191 1432 aaPredicted RBP eCLIP15.77■□□□□ 0.11
CDH13-205ENST00000562307 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
CDH13-205ENST00000562307 SYNJ1O43426 1573 aa15.67■□□□□ 0.1
CDH13-205ENST00000562307 DNAJC5BQ9UF47 199 aa15.67■□□□□ 0.1
CDH13-205ENST00000562307 TOP2BQ02880 1626 aa15.64■□□□□ 0.09
CDH13-205ENST00000562307 LAMC3Q9Y6N6 1575 aa15.63■□□□□ 0.09
CDH13-205ENST00000562307 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
CDH13-205ENST00000562307 LOC105371045A0A1W2PR82 267 aa15.6■□□□□ 0.09
CDH13-205ENST00000562307 EEA1Q15075 1411 aa15.6■□□□□ 0.09
CDH13-205ENST00000562307 CUX1P39880 1505 aa15.58■□□□□ 0.09
CDH13-205ENST00000562307 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
CDH13-205ENST00000562307 FANCD2Q9BXW9 1451 aa15.58■□□□□ 0.08
CDH13-205ENST00000562307 NESP48681 1621 aa15.57■□□□□ 0.08
CDH13-205ENST00000562307 SOGA1O94964 1423 aa15.57■□□□□ 0.08
CDH13-205ENST00000562307 PDS5BQ9NTI5 1447 aa15.52■□□□□ 0.08
CDH13-205ENST00000562307 RUSC2Q8N2Y8 1516 aa15.5■□□□□ 0.07
CDH13-205ENST00000562307 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
CDH13-205ENST00000562307 CEP164Q9UPV0 1460 aa15.47■□□□□ 0.07
CDH13-205ENST00000562307 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
CDH13-205ENST00000562307 TOPBP1Q92547 1522 aa15.42■□□□□ 0.06
CDH13-205ENST00000562307 FGD5Q6ZNL6 1462 aa15.4■□□□□ 0.06
CDH13-205ENST00000562307 URB2Q14146 1524 aaKnown RBP15.38■□□□□ 0.05
CDH13-205ENST00000562307 KIF27Q86VH2 1401 aa15.38■□□□□ 0.05
CDH13-205ENST00000562307 KIF21AQ7Z4S6 1674 aa15.35■□□□□ 0.05
CDH13-205ENST00000562307 KIF21BO75037 1637 aa15.35■□□□□ 0.05
CDH13-205ENST00000562307 TNIKQ9UKE5 1360 aa15.34■□□□□ 0.05
CDH13-205ENST00000562307 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.05
CDH13-205ENST00000562307 GOLGA3Q08378 1498 aa15.33■□□□□ 0.05
CDH13-205ENST00000562307 ABCA10Q8WWZ4 1543 aa15.31■□□□□ 0.04
CDH13-205ENST00000562307 CUX2O14529 1486 aa15.3■□□□□ 0.04
CDH13-205ENST00000562307 PRXQ9BXM0 1461 aa15.3■□□□□ 0.04
CDH13-205ENST00000562307 MRC2Q9UBG0 1479 aa15.3■□□□□ 0.04
CDH13-205ENST00000562307 EHMT2Q96KQ7 1210 aa15.29■□□□□ 0.04
CDH13-205ENST00000562307 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.04
CDH13-205ENST00000562307 IGF1RP08069 1367 aa15.27■□□□□ 0.04
CDH13-205ENST00000562307 ERICH3Q5RHP9 1530 aa15.26■□□□□ 0.03
CDH13-205ENST00000562307 RAPGEF2Q9Y4G8 1499 aa15.25■□□□□ 0.03
CDH13-205ENST00000562307 UBTFP17480 764 aaKnown RBP15.24■□□□□ 0.03
CDH13-205ENST00000562307 WDR62O43379 1518 aa15.22■□□□□ 0.03
CDH13-205ENST00000562307 WDR97A6NE52 1622 aa15.21■□□□□ 0.02
CDH13-205ENST00000562307 CEP162Q5TB80 1403 aa15.19■□□□□ 0.02
CDH13-205ENST00000562307 TARBP1Q13395 1621 aaKnown RBP15.19■□□□□ 0.02
CDH13-205ENST00000562307 ERCC6Q03468 1493 aa15.19■□□□□ 0.02
CDH13-205ENST00000562307 CARMIL1Q5VZK9 1371 aa15.17■□□□□ 0.02
CDH13-205ENST00000562307 ABCA5Q8WWZ7 1642 aa15.14■□□□□ 0.01
CDH13-205ENST00000562307 THOC2Q8NI27 1593 aaKnown RBP15.14■□□□□ 0.01
CDH13-205ENST00000562307 IFT140Q96RY7 1462 aa15.14■□□□□ 0.01
CDH13-205ENST00000562307 TDRD9Q8NDG6 1382 aaKnown RBP15.13■□□□□ 0.01
CDH13-205ENST00000562307 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
CDH13-205ENST00000562307 CUL7Q14999 1698 aa15.09■□□□□ 0.01
CDH13-205ENST00000562307 CLIP1P30622 1438 aa15.09■□□□□ 0.01
CDH13-205ENST00000562307 AQRO60306 1485 aaKnown RBP eCLIP15.03■□□□□ -0
CDH13-205ENST00000562307 GRIN2BQ13224 1484 aa15.02■□□□□ -0
CDH13-205ENST00000562307 ZNF608Q9ULD9 1512 aaPredicted RBP15.01□□□□□ -0.01
CDH13-205ENST00000562307 FHAD1B1AJZ9 1412 aa14.99□□□□□ -0.01
CDH13-205ENST00000562307 PBRM1Q86U86 1689 aa14.97□□□□□ -0.01
CDH13-205ENST00000562307 VPS8Q8N3P4 1428 aa14.97□□□□□ -0.01
CDH13-205ENST00000562307 ARAP1Q96P48 1450 aa14.95□□□□□ -0.02
CDH13-205ENST00000562307 ADAMTS12P58397 1594 aa14.94□□□□□ -0.02
CDH13-205ENST00000562307 TRIM26Q12899 539 aaPredicted RBP14.94□□□□□ -0.02
CDH13-205ENST00000562307 ARHGAP35Q9NRY4 1499 aa14.94□□□□□ -0.02
CDH13-205ENST00000562307 EIF4G3O43432 1585 aaKnown RBP14.93□□□□□ -0.02
CDH13-205ENST00000562307 RANGAP1P46060 587 aaPredicted RBP14.9□□□□□ -0.02
CDH13-205ENST00000562307 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms