RNA–Protein interactions for RNA: ENST00000562075.6

CNN2-204, Transcript of calponin 2, humanhuman

TSL 1 (best)

Gene CNN2, Length 623 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNN2-204ENST00000562075 NISCHQ9Y2I1 1504 aa32.77■■■□□ 2.84
CNN2-204ENST00000562075 CCDC180Q9P1Z9 1646 aa28.7■■■□□ 2.19
CNN2-204ENST00000562075 ZCCHC6Q5VYS8 1495 aaKnown RBP27.5■■□□□ 1.99
CNN2-204ENST00000562075 ABCC9O60706 1549 aa27.26■■□□□ 1.95
CNN2-204ENST00000562075 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
CNN2-204ENST00000562075 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
CNN2-204ENST00000562075 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
CNN2-204ENST00000562075 NACADO15069 1562 aa26.75■■□□□ 1.87
CNN2-204ENST00000562075 SHROOM4Q9ULL8 1493 aa26.59■■□□□ 1.85
CNN2-204ENST00000562075 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
CNN2-204ENST00000562075 SCRIBQ14160 1630 aa26.36■■□□□ 1.81
CNN2-204ENST00000562075 UNC13AQ9UPW8 1703 aa26■■□□□ 1.75
CNN2-204ENST00000562075 BICRAQ9NZM4 1560 aa25.74■■□□□ 1.71
CNN2-204ENST00000562075 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.7
CNN2-204ENST00000562075 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
CNN2-204ENST00000562075 CECR2Q9BXF3 1484 aa25.45■■□□□ 1.66
CNN2-204ENST00000562075 RSF1Q96T23 1441 aaPredicted RBP25.33■■□□□ 1.65
CNN2-204ENST00000562075 BAZ1AQ9NRL2 1556 aaPredicted RBP25.33■■□□□ 1.65
CNN2-204ENST00000562075 MROH2BQ7Z745 1585 aa25.3■■□□□ 1.64
CNN2-204ENST00000562075 SMARCA4P51532 1647 aa25.24■■□□□ 1.63
CNN2-204ENST00000562075 WIZO95785 1651 aa25.09■■□□□ 1.61
CNN2-204ENST00000562075 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
CNN2-204ENST00000562075 PEG3Q9GZU2 1588 aa24.93■■□□□ 1.58
CNN2-204ENST00000562075 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
CNN2-204ENST00000562075 TOP2AP11388 1531 aaKnown RBP24.86■■□□□ 1.57
CNN2-204ENST00000562075 ATAD2BQ9ULI0 1458 aa24.84■■□□□ 1.57
CNN2-204ENST00000562075 BAZ1BQ9UIG0 1483 aaKnown RBP24.73■■□□□ 1.55
CNN2-204ENST00000562075 CC2D2AQ9P2K1 1620 aa24.67■■□□□ 1.54
CNN2-204ENST00000562075 NCAPD3P42695 1498 aa24.66■■□□□ 1.54
CNN2-204ENST00000562075 HMGXB3Q12766 1538 aa24.65■■□□□ 1.54
CNN2-204ENST00000562075 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
CNN2-204ENST00000562075 CHIC1Q5VXU3 224 aa24.29■■□□□ 1.48
CNN2-204ENST00000562075 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
CNN2-204ENST00000562075 CFTRP13569 1480 aa24.07■■□□□ 1.44
CNN2-204ENST00000562075 CADPSQ9ULU8 1353 aa24.02■■□□□ 1.44
CNN2-204ENST00000562075 PRDM2Q13029 1718 aa23.99■■□□□ 1.43
CNN2-204ENST00000562075 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
CNN2-204ENST00000562075 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
CNN2-204ENST00000562075 LAMC3Q9Y6N6 1575 aa23.89■■□□□ 1.41
CNN2-204ENST00000562075 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.41
CNN2-204ENST00000562075 NESP48681 1621 aa23.86■■□□□ 1.41
CNN2-204ENST00000562075 SYNJ1O43426 1573 aa23.78■■□□□ 1.4
CNN2-204ENST00000562075 FANCD2Q9BXW9 1451 aa23.77■■□□□ 1.4
CNN2-204ENST00000562075 TOP2BQ02880 1626 aa23.71■■□□□ 1.39
CNN2-204ENST00000562075 BIVM-ERCC5R4GMW8 1640 aa23.7■■□□□ 1.39
CNN2-204ENST00000562075 PDS5BQ9NTI5 1447 aa23.7■■□□□ 1.38
CNN2-204ENST00000562075 CUX1P39880 1505 aa23.68■■□□□ 1.38
CNN2-204ENST00000562075 CEP164Q9UPV0 1460 aa23.66■■□□□ 1.38
CNN2-204ENST00000562075 KIF21AQ7Z4S6 1674 aa23.6■■□□□ 1.37
CNN2-204ENST00000562075 DNMBPQ6XZF7 1577 aa23.55■■□□□ 1.36
CNN2-204ENST00000562075 FAM9AQ8IZU1 332 aaPredicted RBP23.53■■□□□ 1.36
CNN2-204ENST00000562075 TOPBP1Q92547 1522 aa23.49■■□□□ 1.35
CNN2-204ENST00000562075 SOGA1O94964 1423 aa23.49■■□□□ 1.35
CNN2-204ENST00000562075 URB2Q14146 1524 aaKnown RBP23.48■■□□□ 1.35
CNN2-204ENST00000562075 EEA1Q15075 1411 aa23.46■■□□□ 1.35
CNN2-204ENST00000562075 FGD5Q6ZNL6 1462 aa23.45■■□□□ 1.34
CNN2-204ENST00000562075 ERCC6Q03468 1493 aa23.43■■□□□ 1.34
CNN2-204ENST00000562075 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
CNN2-204ENST00000562075 RUSC2Q8N2Y8 1516 aa23.39■■□□□ 1.34
CNN2-204ENST00000562075 POLA1P09884 1462 aaPredicted RBP23.36■■□□□ 1.33
CNN2-204ENST00000562075 LOC105371045A0A1W2PR82 267 aa23.33■■□□□ 1.33
CNN2-204ENST00000562075 CSRNP3Q8WYN3 585 aa23.3■■□□□ 1.32
CNN2-204ENST00000562075 KIF27Q86VH2 1401 aa23.3■■□□□ 1.32
CNN2-204ENST00000562075 WDR62O43379 1518 aa23.29■■□□□ 1.32
CNN2-204ENST00000562075 CUX2O14529 1486 aa23.28■■□□□ 1.32
CNN2-204ENST00000562075 RAD54L2Q9Y4B4 1467 aa23.27■■□□□ 1.32
CNN2-204ENST00000562075 THOC2Q8NI27 1593 aaKnown RBP23.27■■□□□ 1.32
CNN2-204ENST00000562075 ABCA10Q8WWZ4 1543 aa23.24■■□□□ 1.31
CNN2-204ENST00000562075 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
CNN2-204ENST00000562075 EHMT2Q96KQ7 1210 aa23.2■■□□□ 1.3
CNN2-204ENST00000562075 KIF21BO75037 1637 aa23.17■■□□□ 1.3
CNN2-204ENST00000562075 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
CNN2-204ENST00000562075 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
CNN2-204ENST00000562075 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
CNN2-204ENST00000562075 ABCA5Q8WWZ7 1642 aa23.08■■□□□ 1.29
CNN2-204ENST00000562075 PRXQ9BXM0 1461 aa23.07■■□□□ 1.28
CNN2-204ENST00000562075 IGF1RP08069 1367 aa23.06■■□□□ 1.28
CNN2-204ENST00000562075 TDRD9Q8NDG6 1382 aaKnown RBP23.05■■□□□ 1.28
CNN2-204ENST00000562075 ERICH3Q5RHP9 1530 aa23.04■■□□□ 1.28
CNN2-204ENST00000562075 GAPVD1Q14C86 1478 aa23.03■■□□□ 1.28
CNN2-204ENST00000562075 RAPGEF2Q9Y4G8 1499 aa23.03■■□□□ 1.28
CNN2-204ENST00000562075 UBTFP17480 764 aaKnown RBP23■■□□□ 1.27
CNN2-204ENST00000562075 TNIKQ9UKE5 1360 aa23■■□□□ 1.27
CNN2-204ENST00000562075 CUL7Q14999 1698 aa22.97■■□□□ 1.27
CNN2-204ENST00000562075 CARMIL1Q5VZK9 1371 aa22.97■■□□□ 1.27
CNN2-204ENST00000562075 PBRM1Q86U86 1689 aa22.94■■□□□ 1.26
CNN2-204ENST00000562075 ZNF608Q9ULD9 1512 aaPredicted RBP22.94■■□□□ 1.26
CNN2-204ENST00000562075 AQRO60306 1485 aaKnown RBP eCLIP22.93■■□□□ 1.261e-6■■■□□ 18.2
CNN2-204ENST00000562075 EIF4G3O43432 1585 aaKnown RBP22.9■■□□□ 1.26
CNN2-204ENST00000562075 GRIN2BQ13224 1484 aa22.89■■□□□ 1.25
CNN2-204ENST00000562075 CEP162Q5TB80 1403 aa22.87■■□□□ 1.25
CNN2-204ENST00000562075 ADAMTS12P58397 1594 aa22.8■■□□□ 1.24
CNN2-204ENST00000562075 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
CNN2-204ENST00000562075 SNAPC4Q5SXM2 1469 aa22.76■■□□□ 1.23
CNN2-204ENST00000562075 CLIP1P30622 1438 aa22.74■■□□□ 1.23
CNN2-204ENST00000562075 MAGI1Q96QZ7 1491 aaPredicted RBP22.73■■□□□ 1.23
CNN2-204ENST00000562075 CTTNBP2Q8WZ74 1663 aa22.69■■□□□ 1.22
CNN2-204ENST00000562075 RANGAP1P46060 587 aaPredicted RBP22.67■■□□□ 1.22
CNN2-204ENST00000562075 SYNJ2O15056 1496 aa22.63■■□□□ 1.21
CNN2-204ENST00000562075 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms