RNA–Protein interactions for RNA: ENST00000561954.1

IFT140-205, Transcript of intraflagellar transport 140, humanhuman

TSL 3

Gene IFT140, Length 826 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-205ENST00000561954 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
IFT140-205ENST00000561954 CCDC180Q9P1Z9 1646 aa29.89■■■□□ 2.38
IFT140-205ENST00000561954 ABCC9O60706 1549 aa28.89■■■□□ 2.21
IFT140-205ENST00000561954 ZCCHC6Q5VYS8 1495 aaKnown RBP28.11■■■□□ 2.09
IFT140-205ENST00000561954 NACADO15069 1562 aa28.02■■■□□ 2.08
IFT140-205ENST00000561954 RB1CC1Q8TDY2 1594 aa28■■■□□ 2.07
IFT140-205ENST00000561954 MYO15BQ96JP2 1530 aa27.97■■■□□ 2.07
IFT140-205ENST00000561954 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
IFT140-205ENST00000561954 DCAF8L2P0C7V8 631 aa27.84■■■□□ 2.05
IFT140-205ENST00000561954 UNC13AQ9UPW8 1703 aa27.25■■□□□ 1.95
IFT140-205ENST00000561954 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
IFT140-205ENST00000561954 BICRAQ9NZM4 1560 aa27.05■■□□□ 1.92
IFT140-205ENST00000561954 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
IFT140-205ENST00000561954 PABPN1Q86U42 306 aaKnown RBP eCLIP26.94■■□□□ 1.9
IFT140-205ENST00000561954 EIF4G1Q04637 1599 aaKnown RBP26.37■■□□□ 1.81
IFT140-205ENST00000561954 CC2D2AQ9P2K1 1620 aa26.17■■□□□ 1.78
IFT140-205ENST00000561954 DNAJC5BQ9UF47 199 aa26.14■■□□□ 1.78
IFT140-205ENST00000561954 BAZ1AQ9NRL2 1556 aaPredicted RBP26.11■■□□□ 1.77
IFT140-205ENST00000561954 CECR2Q9BXF3 1484 aa26.08■■□□□ 1.77
IFT140-205ENST00000561954 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
IFT140-205ENST00000561954 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
IFT140-205ENST00000561954 MROH2BQ7Z745 1585 aa25.87■■□□□ 1.73
IFT140-205ENST00000561954 PEG3Q9GZU2 1588 aa25.85■■□□□ 1.73
IFT140-205ENST00000561954 ATAD2BQ9ULI0 1458 aa25.84■■□□□ 1.73
IFT140-205ENST00000561954 NCAPD3P42695 1498 aa25.8■■□□□ 1.72
IFT140-205ENST00000561954 HMGXB3Q12766 1538 aa25.78■■□□□ 1.72
IFT140-205ENST00000561954 BAZ1BQ9UIG0 1483 aaKnown RBP25.69■■□□□ 1.7
IFT140-205ENST00000561954 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
IFT140-205ENST00000561954 WIZO95785 1651 aa25.6■■□□□ 1.69
IFT140-205ENST00000561954 TOP2AP11388 1531 aaKnown RBP25.44■■□□□ 1.66
IFT140-205ENST00000561954 LAMC3Q9Y6N6 1575 aa25.14■■□□□ 1.62
IFT140-205ENST00000561954 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
IFT140-205ENST00000561954 CADPSQ9ULU8 1353 aa25.05■■□□□ 1.6
IFT140-205ENST00000561954 CCDC88BA6NC98 1476 aa25.04■■□□□ 1.6
IFT140-205ENST00000561954 NESP48681 1621 aa25.04■■□□□ 1.6
IFT140-205ENST00000561954 CFTRP13569 1480 aa24.97■■□□□ 1.59
IFT140-205ENST00000561954 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
IFT140-205ENST00000561954 PDS5BQ9NTI5 1447 aa24.95■■□□□ 1.58
IFT140-205ENST00000561954 PRDM2Q13029 1718 aa24.84■■□□□ 1.57
IFT140-205ENST00000561954 KIF21AQ7Z4S6 1674 aa24.81■■□□□ 1.56
IFT140-205ENST00000561954 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
IFT140-205ENST00000561954 CEP164Q9UPV0 1460 aa24.77■■□□□ 1.56
IFT140-205ENST00000561954 THOC2Q8NI27 1593 aaKnown RBP24.71■■□□□ 1.55
IFT140-205ENST00000561954 MRC2Q9UBG0 1479 aa24.68■■□□□ 1.54
IFT140-205ENST00000561954 CUX2O14529 1486 aa24.65■■□□□ 1.54
IFT140-205ENST00000561954 WDR62O43379 1518 aa24.6■■□□□ 1.53
IFT140-205ENST00000561954 URB2Q14146 1524 aaKnown RBP24.49■■□□□ 1.51
IFT140-205ENST00000561954 ABCC8Q09428 1581 aa24.48■■□□□ 1.51
IFT140-205ENST00000561954 DNMBPQ6XZF7 1577 aa24.45■■□□□ 1.5
IFT140-205ENST00000561954 TOPBP1Q92547 1522 aa24.4■■□□□ 1.5
IFT140-205ENST00000561954 CUX1P39880 1505 aa24.29■■□□□ 1.48
IFT140-205ENST00000561954 WRNQ14191 1432 aaPredicted RBP eCLIP24.24■■□□□ 1.47
IFT140-205ENST00000561954 IFT140Q96RY7 1462 aa24.24■■□□□ 1.47
IFT140-205ENST00000561954 POLA1P09884 1462 aaPredicted RBP24.21■■□□□ 1.47
IFT140-205ENST00000561954 TOP2BQ02880 1626 aa24.19■■□□□ 1.46
IFT140-205ENST00000561954 BIVM-ERCC5R4GMW8 1640 aa24.19■■□□□ 1.46
IFT140-205ENST00000561954 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
IFT140-205ENST00000561954 SYNJ1O43426 1573 aa24.15■■□□□ 1.46
IFT140-205ENST00000561954 TARBP1Q13395 1621 aaKnown RBP24.12■■□□□ 1.45
IFT140-205ENST00000561954 WDR97A6NE52 1622 aa24.08■■□□□ 1.45
IFT140-205ENST00000561954 SOGA1O94964 1423 aa24.08■■□□□ 1.44
IFT140-205ENST00000561954 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
IFT140-205ENST00000561954 EIF4G3O43432 1585 aaKnown RBP24.03■■□□□ 1.44
IFT140-205ENST00000561954 ZNF608Q9ULD9 1512 aaPredicted RBP24.01■■□□□ 1.43
IFT140-205ENST00000561954 ABCA10Q8WWZ4 1543 aa23.99■■□□□ 1.43
IFT140-205ENST00000561954 ABCA5Q8WWZ7 1642 aa23.89■■□□□ 1.42
IFT140-205ENST00000561954 AQRO60306 1485 aaKnown RBP eCLIP23.88■■□□□ 1.41
IFT140-205ENST00000561954 TDRD9Q8NDG6 1382 aaKnown RBP23.88■■□□□ 1.41
IFT140-205ENST00000561954 GAPVD1Q14C86 1478 aa23.85■■□□□ 1.41
IFT140-205ENST00000561954 GRIN2BQ13224 1484 aa23.84■■□□□ 1.41
IFT140-205ENST00000561954 PBRM1Q86U86 1689 aa23.81■■□□□ 1.4
IFT140-205ENST00000561954 MAGI1Q96QZ7 1491 aaPredicted RBP23.79■■□□□ 1.4
IFT140-205ENST00000561954 SNAPC4Q5SXM2 1469 aa23.76■■□□□ 1.39
IFT140-205ENST00000561954 TRIM41Q8WV44 630 aa23.75■■□□□ 1.39
IFT140-205ENST00000561954 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
IFT140-205ENST00000561954 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
IFT140-205ENST00000561954 SYNJ2O15056 1496 aa23.67■■□□□ 1.38
IFT140-205ENST00000561954 ADAMTS12P58397 1594 aa23.66■■□□□ 1.38
IFT140-205ENST00000561954 CHD1O14646 1710 aa23.62■■□□□ 1.37
IFT140-205ENST00000561954 FHAD1B1AJZ9 1412 aa23.6■■□□□ 1.37
IFT140-205ENST00000561954 CUL7Q14999 1698 aa23.6■■□□□ 1.37
IFT140-205ENST00000561954 CHMP7Q8WUX9 453 aaPredicted RBP23.55■■□□□ 1.36
IFT140-205ENST00000561954 FBLN2P98095 1184 aa23.54■■□□□ 1.36
IFT140-205ENST00000561954 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
IFT140-205ENST00000561954 OSCARQ8IYS5 282 aa23.54■■□□□ 1.36
IFT140-205ENST00000561954 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
IFT140-205ENST00000561954 IGF1RP08069 1367 aa23.51■■□□□ 1.35
IFT140-205ENST00000561954 EEA1Q15075 1411 aa23.49■■□□□ 1.35
IFT140-205ENST00000561954 DNAJC5Q9H3Z4 198 aa23.46■■□□□ 1.35
IFT140-205ENST00000561954 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
IFT140-205ENST00000561954 CARMIL1Q5VZK9 1371 aa23.41■■□□□ 1.34
IFT140-205ENST00000561954 CLASP1Q7Z460 1538 aa23.41■■□□□ 1.34
IFT140-205ENST00000561954 NUP160Q12769 1436 aa23.41■■□□□ 1.34
IFT140-205ENST00000561954 CEP170Q5SW79 1584 aa23.37■■□□□ 1.33
IFT140-205ENST00000561954 RAPGEF2Q9Y4G8 1499 aa23.35■■□□□ 1.33
IFT140-205ENST00000561954 PRXQ9BXM0 1461 aa23.31■■□□□ 1.32
IFT140-205ENST00000561954 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
IFT140-205ENST00000561954 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
IFT140-205ENST00000561954 KIAA0586Q9BVV6 1533 aa23.23■■□□□ 1.31
IFT140-205ENST00000561954 SHROOM2Q13796 1616 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms