RNA–Protein interactions for RNA: ENST00000561638.1

TMEM249-201, Transcript of transmembrane protein 249, humanhuman

TSL 2

Gene TMEM249, Length 1,762 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM249-201ENST00000561638 NISCHQ9Y2I1 1504 aa54.78■■■■■ 6.36
TMEM249-201ENST00000561638 CCDC180Q9P1Z9 1646 aa48.28■■■■■ 5.32
TMEM249-201ENST00000561638 ABCC9O60706 1549 aa46.54■■■■■ 5.04
TMEM249-201ENST00000561638 ZCCHC6Q5VYS8 1495 aaKnown RBP45.81■■■■■ 4.92
TMEM249-201ENST00000561638 DCAF8L2P0C7V8 631 aa45.64■■■■■ 4.9
TMEM249-201ENST00000561638 DCAF1Q9Y4B6 1507 aa45.3■■■■■ 4.84
TMEM249-201ENST00000561638 NACADO15069 1562 aa45.21■■■■■ 4.83
TMEM249-201ENST00000561638 MYO15BQ96JP2 1530 aa45.16■■■■■ 4.82
TMEM249-201ENST00000561638 RB1CC1Q8TDY2 1594 aa45.08■■■■■ 4.81
TMEM249-201ENST00000561638 SCRIBQ14160 1630 aa44.24■■■■■ 4.67
TMEM249-201ENST00000561638 UNC13AQ9UPW8 1703 aa44.02■■■■■ 4.64
TMEM249-201ENST00000561638 SHROOM4Q9ULL8 1493 aa43.99■■■■■ 4.63
TMEM249-201ENST00000561638 PABPN1Q86U42 306 aaKnown RBP eCLIP43.67■■■■■ 4.58
TMEM249-201ENST00000561638 BICRAQ9NZM4 1560 aa43.62■■■■■ 4.57
TMEM249-201ENST00000561638 CECR2Q9BXF3 1484 aa42.6■■■■■ 4.41
TMEM249-201ENST00000561638 EIF4G1Q04637 1599 aaKnown RBP42.46■■■■■ 4.39
TMEM249-201ENST00000561638 BAZ1AQ9NRL2 1556 aaPredicted RBP42.43■■■■■ 4.38
TMEM249-201ENST00000561638 SMARCA4P51532 1647 aa42.33■■■■■ 4.37
TMEM249-201ENST00000561638 MROH2BQ7Z745 1585 aa42.25■■■■■ 4.35
TMEM249-201ENST00000561638 RSF1Q96T23 1441 aaPredicted RBP42.08■■■■■ 4.33
TMEM249-201ENST00000561638 CC2D2AQ9P2K1 1620 aa42.08■■■■■ 4.33
TMEM249-201ENST00000561638 SMARCA2P51531 1590 aa41.89■■■■■ 4.3
TMEM249-201ENST00000561638 ATAD2BQ9ULI0 1458 aa41.88■■■■■ 4.29
TMEM249-201ENST00000561638 DNAJC5BQ9UF47 199 aa41.86■■■■■ 4.29
TMEM249-201ENST00000561638 WIZO95785 1651 aa41.85■■■■■ 4.29
TMEM249-201ENST00000561638 SUPT5HO00267 1087 aaKnown RBP41.85■■■■■ 4.29
TMEM249-201ENST00000561638 PEG3Q9GZU2 1588 aa41.84■■■■■ 4.29
TMEM249-201ENST00000561638 NCAPD3P42695 1498 aa41.69■■■■■ 4.27
TMEM249-201ENST00000561638 BAZ1BQ9UIG0 1483 aaKnown RBP41.64■■■■■ 4.26
TMEM249-201ENST00000561638 HMGXB3Q12766 1538 aa41.58■■■■■ 4.25
TMEM249-201ENST00000561638 TOP2AP11388 1531 aaKnown RBP41.44■■■■■ 4.23
TMEM249-201ENST00000561638 CCDC88BA6NC98 1476 aa40.97■■■■■ 4.15
TMEM249-201ENST00000561638 CADPSQ9ULU8 1353 aa40.58■■■■■ 4.09
TMEM249-201ENST00000561638 CFTRP13569 1480 aa40.5■■■■■ 4.07
TMEM249-201ENST00000561638 NESP48681 1621 aa40.49■■■■■ 4.07
TMEM249-201ENST00000561638 LAMC3Q9Y6N6 1575 aa40.48■■■■■ 4.07
TMEM249-201ENST00000561638 PRDM2Q13029 1718 aa40.23■■■■■ 4.03
TMEM249-201ENST00000561638 PDS5BQ9NTI5 1447 aa40.23■■■■■ 4.03
TMEM249-201ENST00000561638 FANCD2Q9BXW9 1451 aa40.14■■■■■ 4.02
TMEM249-201ENST00000561638 ERCC6Q03468 1493 aa40.09■■■■■ 4.01
TMEM249-201ENST00000561638 KIF21AQ7Z4S6 1674 aa40.02■■■■■ 4
TMEM249-201ENST00000561638 CEP164Q9UPV0 1460 aa40.01■■■■■ 4
TMEM249-201ENST00000561638 ABCC8Q09428 1581 aa39.79■■■■□ 3.96
TMEM249-201ENST00000561638 MRC2Q9UBG0 1479 aa39.74■■■■□ 3.95
TMEM249-201ENST00000561638 WRNQ14191 1432 aaPredicted RBP eCLIP39.71■■■■□ 3.95
TMEM249-201ENST00000561638 URB2Q14146 1524 aaKnown RBP39.64■■■■□ 3.94
TMEM249-201ENST00000561638 THOC2Q8NI27 1593 aaKnown RBP39.63■■■■□ 3.94
TMEM249-201ENST00000561638 DNMBPQ6XZF7 1577 aa39.59■■■■□ 3.93
TMEM249-201ENST00000561638 CUX1P39880 1505 aa39.58■■■■□ 3.93
TMEM249-201ENST00000561638 TOPBP1Q92547 1522 aa39.57■■■■□ 3.93
TMEM249-201ENST00000561638 WDR62O43379 1518 aa39.55■■■■□ 3.92
TMEM249-201ENST00000561638 SYNJ1O43426 1573 aa39.52■■■■□ 3.92
TMEM249-201ENST00000561638 TOP2BQ02880 1626 aa39.47■■■■□ 3.91
TMEM249-201ENST00000561638 CHIC1Q5VXU3 224 aa39.46■■■■□ 3.91
TMEM249-201ENST00000561638 TRIM41Q8WV44 630 aa39.46■■■■□ 3.91
TMEM249-201ENST00000561638 BIVM-ERCC5R4GMW8 1640 aa39.43■■■■□ 3.9
TMEM249-201ENST00000561638 FGD5Q6ZNL6 1462 aa39.35■■■■□ 3.89
TMEM249-201ENST00000561638 POLA1P09884 1462 aaPredicted RBP39.3■■■■□ 3.88
TMEM249-201ENST00000561638 CUX2O14529 1486 aa39.22■■■■□ 3.87
TMEM249-201ENST00000561638 SOGA1O94964 1423 aa39.17■■■■□ 3.86
TMEM249-201ENST00000561638 RAD54L2Q9Y4B4 1467 aa39.14■■■■□ 3.86
TMEM249-201ENST00000561638 IFT140Q96RY7 1462 aa39.11■■■■□ 3.85
TMEM249-201ENST00000561638 TARBP1Q13395 1621 aaKnown RBP39.03■■■■□ 3.84
TMEM249-201ENST00000561638 ABCA10Q8WWZ4 1543 aa38.97■■■■□ 3.83
TMEM249-201ENST00000561638 WDR97A6NE52 1622 aa38.9■■■■□ 3.82
TMEM249-201ENST00000561638 TDRD9Q8NDG6 1382 aaKnown RBP38.88■■■■□ 3.81
TMEM249-201ENST00000561638 ZNF608Q9ULD9 1512 aaPredicted RBP38.87■■■■□ 3.81
TMEM249-201ENST00000561638 KIF27Q86VH2 1401 aa38.81■■■■□ 3.8
TMEM249-201ENST00000561638 AQRO60306 1485 aaKnown RBP eCLIP38.79■■■■□ 3.8
TMEM249-201ENST00000561638 EIF4G3O43432 1585 aaKnown RBP38.76■■■■□ 3.79
TMEM249-201ENST00000561638 GAPVD1Q14C86 1478 aa38.74■■■■□ 3.79
TMEM249-201ENST00000561638 ABCA5Q8WWZ7 1642 aa38.72■■■■□ 3.79
TMEM249-201ENST00000561638 RUSC2Q8N2Y8 1516 aa38.69■■■■□ 3.78
TMEM249-201ENST00000561638 FAM9AQ8IZU1 332 aaPredicted RBP38.67■■■■□ 3.78
TMEM249-201ENST00000561638 EEA1Q15075 1411 aa38.61■■■■□ 3.77
TMEM249-201ENST00000561638 GRIN2BQ13224 1484 aa38.6■■■■□ 3.77
TMEM249-201ENST00000561638 PBRM1Q86U86 1689 aa38.56■■■■□ 3.76
TMEM249-201ENST00000561638 ERICH3Q5RHP9 1530 aa38.52■■■■□ 3.76
TMEM249-201ENST00000561638 IGF1RP08069 1367 aa38.5■■■■□ 3.75
TMEM249-201ENST00000561638 CSRNP3Q8WYN3 585 aa38.47■■■■□ 3.75
TMEM249-201ENST00000561638 SNAPC4Q5SXM2 1469 aa38.45■■■■□ 3.75
TMEM249-201ENST00000561638 MAGI1Q96QZ7 1491 aaPredicted RBP38.4■■■■□ 3.74
TMEM249-201ENST00000561638 CUL7Q14999 1698 aa38.36■■■■□ 3.73
TMEM249-201ENST00000561638 CARMIL1Q5VZK9 1371 aa38.33■■■■□ 3.73
TMEM249-201ENST00000561638 ADAMTS12P58397 1594 aa38.31■■■■□ 3.72
TMEM249-201ENST00000561638 FHAD1B1AJZ9 1412 aa38.3■■■■□ 3.72
TMEM249-201ENST00000561638 FBLN2P98095 1184 aa38.28■■■■□ 3.72
TMEM249-201ENST00000561638 SYNJ2O15056 1496 aa38.25■■■■□ 3.71
TMEM249-201ENST00000561638 CHMP7Q8WUX9 453 aaPredicted RBP38.24■■■■□ 3.71
TMEM249-201ENST00000561638 PRXQ9BXM0 1461 aa38.22■■■■□ 3.71
TMEM249-201ENST00000561638 RAPGEF2Q9Y4G8 1499 aa38.19■■■■□ 3.7
TMEM249-201ENST00000561638 EHMT2Q96KQ7 1210 aa38.16■■■■□ 3.7
TMEM249-201ENST00000561638 KIF21BO75037 1637 aa38.13■■■■□ 3.7
TMEM249-201ENST00000561638 GRIN2AQ12879 1464 aa38.11■■■■□ 3.69
TMEM249-201ENST00000561638 CHD1O14646 1710 aa38.09■■■■□ 3.69
TMEM249-201ENST00000561638 GOLGA3Q08378 1498 aa38.04■■■■□ 3.68
TMEM249-201ENST00000561638 UBTFP17480 764 aaKnown RBP37.96■■■■□ 3.67
TMEM249-201ENST00000561638 LOC105371045A0A1W2PR82 267 aa37.9■■■■□ 3.66
TMEM249-201ENST00000561638 CEP170Q5SW79 1584 aa37.86■■■■□ 3.65
TMEM249-201ENST00000561638 NUP160Q12769 1436 aa37.85■■■■□ 3.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms