RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 NISCHQ9Y2I1 1504 aa26.29■■□□□ 1.8
SNX1-212ENST00000560861 CCDC180Q9P1Z9 1646 aa23.08■■□□□ 1.29
SNX1-212ENST00000560861 ZCCHC6Q5VYS8 1495 aaKnown RBP22.09■■□□□ 1.13
SNX1-212ENST00000560861 AEBP2Q6ZN18 517 aaPredicted RBP21.94■■□□□ 1.1
SNX1-212ENST00000560861 ABCC9O60706 1549 aa21.83■■□□□ 1.09
SNX1-212ENST00000560861 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
SNX1-212ENST00000560861 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
SNX1-212ENST00000560861 NACADO15069 1562 aa21.48■■□□□ 1.03
SNX1-212ENST00000560861 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
SNX1-212ENST00000560861 RB1CC1Q8TDY2 1594 aa21.31■■□□□ 1
SNX1-212ENST00000560861 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
SNX1-212ENST00000560861 SCRIBQ14160 1630 aa21.07■□□□□ 0.96
SNX1-212ENST00000560861 UNC13AQ9UPW8 1703 aa20.95■□□□□ 0.94
SNX1-212ENST00000560861 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
SNX1-212ENST00000560861 BICRAQ9NZM4 1560 aa20.75■□□□□ 0.91
SNX1-212ENST00000560861 PABPN1Q86U42 306 aaKnown RBP eCLIP20.47■□□□□ 0.87
SNX1-212ENST00000560861 CECR2Q9BXF3 1484 aa20.42■□□□□ 0.86
SNX1-212ENST00000560861 DNAJC5BQ9UF47 199 aa20.36■□□□□ 0.85
SNX1-212ENST00000560861 BAZ1AQ9NRL2 1556 aaPredicted RBP20.3■□□□□ 0.84
SNX1-212ENST00000560861 RSF1Q96T23 1441 aaPredicted RBP20.3■□□□□ 0.84
SNX1-212ENST00000560861 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
SNX1-212ENST00000560861 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
SNX1-212ENST00000560861 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
SNX1-212ENST00000560861 WIZO95785 1651 aa20.11■□□□□ 0.81
SNX1-212ENST00000560861 PEG3Q9GZU2 1588 aa20.08■□□□□ 0.81
SNX1-212ENST00000560861 EIF4G1Q04637 1599 aaKnown RBP20.07■□□□□ 0.8
SNX1-212ENST00000560861 ATAD2BQ9ULI0 1458 aa19.95■□□□□ 0.78
SNX1-212ENST00000560861 TOP2AP11388 1531 aaKnown RBP19.93■□□□□ 0.78
SNX1-212ENST00000560861 SMARCA2P51531 1590 aa19.93■□□□□ 0.78
SNX1-212ENST00000560861 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
SNX1-212ENST00000560861 HMGXB3Q12766 1538 aa19.81■□□□□ 0.76
SNX1-212ENST00000560861 CC2D2AQ9P2K1 1620 aa19.8■□□□□ 0.76
SNX1-212ENST00000560861 BAZ1BQ9UIG0 1483 aaKnown RBP19.78■□□□□ 0.76
SNX1-212ENST00000560861 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
SNX1-212ENST00000560861 CFTRP13569 1480 aa19.32■□□□□ 0.68
SNX1-212ENST00000560861 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
SNX1-212ENST00000560861 CADPSQ9ULU8 1353 aa19.25■□□□□ 0.67
SNX1-212ENST00000560861 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
SNX1-212ENST00000560861 LAMC3Q9Y6N6 1575 aa19.17■□□□□ 0.66
SNX1-212ENST00000560861 NESP48681 1621 aa19.14■□□□□ 0.65
SNX1-212ENST00000560861 WRNQ14191 1432 aaPredicted RBP eCLIP19.08■□□□□ 0.65
SNX1-212ENST00000560861 SYNJ1O43426 1573 aa19.07■□□□□ 0.64
SNX1-212ENST00000560861 BIVM-ERCC5R4GMW8 1640 aa19.03■□□□□ 0.64
SNX1-212ENST00000560861 FANCD2Q9BXW9 1451 aa19.03■□□□□ 0.64
SNX1-212ENST00000560861 TRIM41Q8WV44 630 aa19.03■□□□□ 0.64
SNX1-212ENST00000560861 TOP2BQ02880 1626 aa19.01■□□□□ 0.63
SNX1-212ENST00000560861 CUX1P39880 1505 aa18.99■□□□□ 0.63
SNX1-212ENST00000560861 KIF21AQ7Z4S6 1674 aa18.95■□□□□ 0.62
SNX1-212ENST00000560861 PDS5BQ9NTI5 1447 aa18.95■□□□□ 0.62
SNX1-212ENST00000560861 CEP164Q9UPV0 1460 aa18.92■□□□□ 0.62
SNX1-212ENST00000560861 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.61
SNX1-212ENST00000560861 URB2Q14146 1524 aaKnown RBP18.85■□□□□ 0.61
SNX1-212ENST00000560861 TOPBP1Q92547 1522 aa18.84■□□□□ 0.61
SNX1-212ENST00000560861 ERCC6Q03468 1493 aa18.79■□□□□ 0.6
SNX1-212ENST00000560861 FGD5Q6ZNL6 1462 aa18.78■□□□□ 0.6
SNX1-212ENST00000560861 SENP3Q9H4L4 574 aaPredicted RBP18.78■□□□□ 0.6
SNX1-212ENST00000560861 CUX2O14529 1486 aa18.77■□□□□ 0.6
SNX1-212ENST00000560861 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
SNX1-212ENST00000560861 SOGA1O94964 1423 aa18.77■□□□□ 0.6
SNX1-212ENST00000560861 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
SNX1-212ENST00000560861 EEA1Q15075 1411 aa18.74■□□□□ 0.59
SNX1-212ENST00000560861 POLA1P09884 1462 aaPredicted RBP18.73■□□□□ 0.59
SNX1-212ENST00000560861 WDR62O43379 1518 aa18.73■□□□□ 0.59
SNX1-212ENST00000560861 THOC2Q8NI27 1593 aaKnown RBP18.72■□□□□ 0.59
SNX1-212ENST00000560861 WDR97A6NE52 1622 aa18.67■□□□□ 0.58
SNX1-212ENST00000560861 ABCA10Q8WWZ4 1543 aa18.65■□□□□ 0.58
SNX1-212ENST00000560861 FAM9AQ8IZU1 332 aaPredicted RBP18.63■□□□□ 0.57
SNX1-212ENST00000560861 RAD54L2Q9Y4B4 1467 aa18.63■□□□□ 0.57
SNX1-212ENST00000560861 TARBP1Q13395 1621 aaKnown RBP18.63■□□□□ 0.57
SNX1-212ENST00000560861 KIF27Q86VH2 1401 aa18.59■□□□□ 0.57
SNX1-212ENST00000560861 CSRNP3Q8WYN3 585 aa18.58■□□□□ 0.56
SNX1-212ENST00000560861 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
SNX1-212ENST00000560861 KIF21BO75037 1637 aa18.56■□□□□ 0.56
SNX1-212ENST00000560861 ABCA5Q8WWZ7 1642 aa18.55■□□□□ 0.56
SNX1-212ENST00000560861 LOC105371045A0A1W2PR82 267 aa18.54■□□□□ 0.56
SNX1-212ENST00000560861 IFT140Q96RY7 1462 aa18.52■□□□□ 0.55
SNX1-212ENST00000560861 PHF23Q9BUL5 403 aaPredicted RBP18.51■□□□□ 0.55
SNX1-212ENST00000560861 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
SNX1-212ENST00000560861 IGF1RP08069 1367 aa18.47■□□□□ 0.55
SNX1-212ENST00000560861 ERICH3Q5RHP9 1530 aa18.46■□□□□ 0.55
SNX1-212ENST00000560861 GOLGA3Q08378 1498 aa18.45■□□□□ 0.54
SNX1-212ENST00000560861 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
SNX1-212ENST00000560861 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
SNX1-212ENST00000560861 RAPGEF2Q9Y4G8 1499 aa18.42■□□□□ 0.54
SNX1-212ENST00000560861 ZNF608Q9ULD9 1512 aaPredicted RBP18.4■□□□□ 0.54
SNX1-212ENST00000560861 CUL7Q14999 1698 aa18.4■□□□□ 0.54
SNX1-212ENST00000560861 PBRM1Q86U86 1689 aa18.4■□□□□ 0.54
SNX1-212ENST00000560861 EIF4G3O43432 1585 aaKnown RBP18.38■□□□□ 0.53
SNX1-212ENST00000560861 TNIKQ9UKE5 1360 aa18.36■□□□□ 0.53
SNX1-212ENST00000560861 AQRO60306 1485 aaKnown RBP eCLIP18.35■□□□□ 0.534e-6■■■■■ 31
SNX1-212ENST00000560861 CARMIL1Q5VZK9 1371 aa18.34■□□□□ 0.53
SNX1-212ENST00000560861 GRIN2BQ13224 1484 aa18.33■□□□□ 0.52
SNX1-212ENST00000560861 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
SNX1-212ENST00000560861 EHMT2Q96KQ7 1210 aa18.29■□□□□ 0.52
SNX1-212ENST00000560861 FHAD1B1AJZ9 1412 aa18.24■□□□□ 0.51
SNX1-212ENST00000560861 CEP162Q5TB80 1403 aa18.23■□□□□ 0.51
SNX1-212ENST00000560861 UBTFP17480 764 aaKnown RBP18.22■□□□□ 0.51
SNX1-212ENST00000560861 SNAPC4Q5SXM2 1469 aa18.21■□□□□ 0.51
SNX1-212ENST00000560861 MAGI1Q96QZ7 1491 aaPredicted RBP18.21■□□□□ 0.51
SNX1-212ENST00000560861 CTTNBP2Q8WZ74 1663 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms