RNA–Protein interactions for RNA: ENST00000560565.1

CCDC33-209, Transcript of coiled-coil domain containing 33, humanhuman

TSL 1 (best)

Gene CCDC33, Length 1,275 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC33-209ENST00000560565 NISCHQ9Y2I1 1504 aa18.89■□□□□ 0.61
CCDC33-209ENST00000560565 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
CCDC33-209ENST00000560565 DNAJC5Q9H3Z4 198 aa16.87■□□□□ 0.29
CCDC33-209ENST00000560565 CCDC180Q9P1Z9 1646 aa16.81■□□□□ 0.28
CCDC33-209ENST00000560565 ABCC9O60706 1549 aa16.65■□□□□ 0.26
CCDC33-209ENST00000560565 DCAF8L2P0C7V8 631 aa15.91■□□□□ 0.14
CCDC33-209ENST00000560565 RB1CC1Q8TDY2 1594 aa15.89■□□□□ 0.13
CCDC33-209ENST00000560565 NACADO15069 1562 aa15.85■□□□□ 0.13
CCDC33-209ENST00000560565 MYO15BQ96JP2 1530 aa15.71■□□□□ 0.11
CCDC33-209ENST00000560565 ZCCHC6Q5VYS8 1495 aaKnown RBP15.69■□□□□ 0.1
CCDC33-209ENST00000560565 DCAF1Q9Y4B6 1507 aa15.61■□□□□ 0.09
CCDC33-209ENST00000560565 UNC13AQ9UPW8 1703 aa15.53■□□□□ 0.08
CCDC33-209ENST00000560565 PABPN1Q86U42 306 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC33-209ENST00000560565 TRIM41Q8WV44 630 aa15.41■□□□□ 0.06
CCDC33-209ENST00000560565 BICRAQ9NZM4 1560 aa15.39■□□□□ 0.05
CCDC33-209ENST00000560565 SCRIBQ14160 1630 aa15.35■□□□□ 0.05
CCDC33-209ENST00000560565 SHROOM4Q9ULL8 1493 aa15.21■□□□□ 0.03
CCDC33-209ENST00000560565 CECR2Q9BXF3 1484 aa15.08■□□□□ 0.01
CCDC33-209ENST00000560565 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
CCDC33-209ENST00000560565 CC2D2AQ9P2K1 1620 aa14.97□□□□□ -0.01
CCDC33-209ENST00000560565 CUX2O14529 1486 aa14.94□□□□□ -0.02
CCDC33-209ENST00000560565 AEBP2Q6ZN18 517 aaPredicted RBP14.93□□□□□ -0.02
CCDC33-209ENST00000560565 ILDR1Q86SU0 546 aaPredicted RBP14.77□□□□□ -0.05
CCDC33-209ENST00000560565 SMARCA4P51532 1647 aa14.66□□□□□ -0.06
CCDC33-209ENST00000560565 BAZ1AQ9NRL2 1556 aaPredicted RBP14.64□□□□□ -0.07
CCDC33-209ENST00000560565 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
CCDC33-209ENST00000560565 ATAD2BQ9ULI0 1458 aa14.62□□□□□ -0.07
CCDC33-209ENST00000560565 SMARCA2P51531 1590 aa14.6□□□□□ -0.07
CCDC33-209ENST00000560565 MROH2BQ7Z745 1585 aa14.55□□□□□ -0.08
CCDC33-209ENST00000560565 HMGXB3Q12766 1538 aa14.52□□□□□ -0.08
CCDC33-209ENST00000560565 PEG3Q9GZU2 1588 aa14.51□□□□□ -0.09
CCDC33-209ENST00000560565 BAZ1BQ9UIG0 1483 aaKnown RBP14.5□□□□□ -0.09
CCDC33-209ENST00000560565 WIZO95785 1651 aa14.4□□□□□ -0.1
CCDC33-209ENST00000560565 ERCC6Q03468 1493 aa14.37□□□□□ -0.11
CCDC33-209ENST00000560565 RSF1Q96T23 1441 aaPredicted RBP14.36□□□□□ -0.11
CCDC33-209ENST00000560565 NESP48681 1621 aa14.3□□□□□ -0.12
CCDC33-209ENST00000560565 SUPT5HO00267 1087 aaKnown RBP14.27□□□□□ -0.13
CCDC33-209ENST00000560565 LAMC3Q9Y6N6 1575 aa14.25□□□□□ -0.13
CCDC33-209ENST00000560565 TOP2AP11388 1531 aaKnown RBP14.22□□□□□ -0.13
CCDC33-209ENST00000560565 CADPSQ9ULU8 1353 aa14.21□□□□□ -0.14
CCDC33-209ENST00000560565 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
CCDC33-209ENST00000560565 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
CCDC33-209ENST00000560565 KIF21AQ7Z4S6 1674 aa14.13□□□□□ -0.15
CCDC33-209ENST00000560565 CFTRP13569 1480 aa14.09□□□□□ -0.15
CCDC33-209ENST00000560565 CCDC88BA6NC98 1476 aa14.08□□□□□ -0.16
CCDC33-209ENST00000560565 THOC2Q8NI27 1593 aaKnown RBP14.08□□□□□ -0.16
CCDC33-209ENST00000560565 FANCD2Q9BXW9 1451 aa14.03□□□□□ -0.16
CCDC33-209ENST00000560565 CEP164Q9UPV0 1460 aa14.02□□□□□ -0.16
CCDC33-209ENST00000560565 RIMBP3CA6NJZ7 1639 aa14.01□□□□□ -0.17
CCDC33-209ENST00000560565 RIMBP3BA6NNM3 1639 aa14.01□□□□□ -0.17
CCDC33-209ENST00000560565 RIMBP3Q9UFD9 1639 aa14.01□□□□□ -0.17
CCDC33-209ENST00000560565 MRC2Q9UBG0 1479 aa14.01□□□□□ -0.17
CCDC33-209ENST00000560565 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
CCDC33-209ENST00000560565 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
CCDC33-209ENST00000560565 WDR62O43379 1518 aa13.96□□□□□ -0.17
CCDC33-209ENST00000560565 HRCP23327 699 aa13.95□□□□□ -0.18
CCDC33-209ENST00000560565 URB2Q14146 1524 aaKnown RBP13.89□□□□□ -0.19
CCDC33-209ENST00000560565 SOCS7O14512 581 aa13.84□□□□□ -0.19
CCDC33-209ENST00000560565 LMTK3Q96Q04 1460 aa13.82□□□□□ -0.2
CCDC33-209ENST00000560565 ABCC8Q09428 1581 aa13.81□□□□□ -0.2
CCDC33-209ENST00000560565 TOPBP1Q92547 1522 aa13.8□□□□□ -0.2
CCDC33-209ENST00000560565 ARHGEF11O15085 1522 aa13.79□□□□□ -0.2
CCDC33-209ENST00000560565 CYB5RLQ6IPT4 315 aa13.78□□□□□ -0.2
CCDC33-209ENST00000560565 DNMBPQ6XZF7 1577 aa13.77□□□□□ -0.21
CCDC33-209ENST00000560565 PELP1Q8IZL8 1130 aaKnown RBP13.74□□□□□ -0.21
CCDC33-209ENST00000560565 IFT140Q96RY7 1462 aa13.74□□□□□ -0.21
CCDC33-209ENST00000560565 CHIC1Q5VXU3 224 aa13.69□□□□□ -0.22
CCDC33-209ENST00000560565 ILDR2Q71H61 639 aa13.69□□□□□ -0.22
CCDC33-209ENST00000560565 ZNF608Q9ULD9 1512 aaPredicted RBP13.68□□□□□ -0.22
CCDC33-209ENST00000560565 POLA1P09884 1462 aaPredicted RBP13.67□□□□□ -0.22
CCDC33-209ENST00000560565 CUX1P39880 1505 aa13.65□□□□□ -0.22
CCDC33-209ENST00000560565 FBXO41Q8TF61 875 aa13.65□□□□□ -0.22
CCDC33-209ENST00000560565 SOGA1O94964 1423 aa13.64□□□□□ -0.23
CCDC33-209ENST00000560565 TARBP1Q13395 1621 aaKnown RBP13.64□□□□□ -0.23
CCDC33-209ENST00000560565 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
CCDC33-209ENST00000560565 FGD5Q6ZNL6 1462 aa13.62□□□□□ -0.23
CCDC33-209ENST00000560565 RAD54L2Q9Y4B4 1467 aa13.62□□□□□ -0.23
CCDC33-209ENST00000560565 EIF4G3O43432 1585 aaKnown RBP13.61□□□□□ -0.23
CCDC33-209ENST00000560565 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.23
CCDC33-209ENST00000560565 TDRD9Q8NDG6 1382 aaKnown RBP13.58□□□□□ -0.24
CCDC33-209ENST00000560565 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
CCDC33-209ENST00000560565 WRNQ14191 1432 aaPredicted RBP eCLIP13.55□□□□□ -0.24
CCDC33-209ENST00000560565 WDR97A6NE52 1622 aa13.53□□□□□ -0.24
CCDC33-209ENST00000560565 PCGF6Q9BYE7 350 aa13.52□□□□□ -0.25
CCDC33-209ENST00000560565 TOP2BQ02880 1626 aa13.52□□□□□ -0.25
CCDC33-209ENST00000560565 BIVM-ERCC5R4GMW8 1640 aa13.52□□□□□ -0.25
CCDC33-209ENST00000560565 KDM4FA0A1W2PPD8 638 aa13.51□□□□□ -0.25
CCDC33-209ENST00000560565 FBLN2P98095 1184 aa13.51□□□□□ -0.25
CCDC33-209ENST00000560565 SYNJ1O43426 1573 aa13.5□□□□□ -0.25
CCDC33-209ENST00000560565 ERCC6L2Q5T890 1561 aa13.49□□□□□ -0.25
CCDC33-209ENST00000560565 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
CCDC33-209ENST00000560565 GRIN2BQ13224 1484 aa13.48□□□□□ -0.25
CCDC33-209ENST00000560565 GAPVD1Q14C86 1478 aa13.48□□□□□ -0.25
CCDC33-209ENST00000560565 TRIM26Q12899 539 aaPredicted RBP13.47□□□□□ -0.25
CCDC33-209ENST00000560565 CHD1O14646 1710 aa13.47□□□□□ -0.25
CCDC33-209ENST00000560565 SNAPC4Q5SXM2 1469 aa13.46□□□□□ -0.25
CCDC33-209ENST00000560565 CHMP7Q8WUX9 453 aaPredicted RBP13.45□□□□□ -0.26
CCDC33-209ENST00000560565 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
CCDC33-209ENST00000560565 PBRM1Q86U86 1689 aa13.44□□□□□ -0.26
CCDC33-209ENST00000560565 ABCA5Q8WWZ7 1642 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms