RNA–Protein interactions for RNA: ENST00000560504.1

PIF1-209, Transcript of PIF1 5'-to-3' DNA helicase, humanhuman

TSL 2

Gene PIF1, Length 1,114 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1-209ENST00000560504 NISCHQ9Y2I1 1504 aa52.58■■■■■ 6.01
PIF1-209ENST00000560504 CCDC180Q9P1Z9 1646 aa46.54■■■■■ 5.04
PIF1-209ENST00000560504 ABCC9O60706 1549 aa45.62■■■■■ 4.89
PIF1-209ENST00000560504 DCAF8L2P0C7V8 631 aa44.09■■■■■ 4.65
PIF1-209ENST00000560504 RB1CC1Q8TDY2 1594 aa43.85■■■■■ 4.61
PIF1-209ENST00000560504 NACADO15069 1562 aa43.84■■■■■ 4.61
PIF1-209ENST00000560504 ZCCHC6Q5VYS8 1495 aaKnown RBP43.8■■■■■ 4.6
PIF1-209ENST00000560504 MYO15BQ96JP2 1530 aa43.6■■■■■ 4.57
PIF1-209ENST00000560504 DCAF1Q9Y4B6 1507 aa43.47■■■■■ 4.55
PIF1-209ENST00000560504 PABPN1Q86U42 306 aaKnown RBP eCLIP42.75■■■■■ 4.43
PIF1-209ENST00000560504 UNC13AQ9UPW8 1703 aa42.68■■■■■ 4.42
PIF1-209ENST00000560504 SCRIBQ14160 1630 aa42.58■■■■■ 4.41
PIF1-209ENST00000560504 BICRAQ9NZM4 1560 aa42.5■■■■■ 4.39
PIF1-209ENST00000560504 SHROOM4Q9ULL8 1493 aa42.06■■■■■ 4.32
PIF1-209ENST00000560504 DNAJC5BQ9UF47 199 aa41.9■■■■■ 4.3
PIF1-209ENST00000560504 EIF4G1Q04637 1599 aaKnown RBP41.39■■■■■ 4.22
PIF1-209ENST00000560504 CC2D2AQ9P2K1 1620 aa41.19■■■■■ 4.18
PIF1-209ENST00000560504 CECR2Q9BXF3 1484 aa41■■■■■ 4.15
PIF1-209ENST00000560504 BAZ1AQ9NRL2 1556 aaPredicted RBP40.73■■■■■ 4.11
PIF1-209ENST00000560504 SMARCA4P51532 1647 aa40.71■■■■■ 4.11
PIF1-209ENST00000560504 ATAD2BQ9ULI0 1458 aa40.55■■■■■ 4.08
PIF1-209ENST00000560504 MROH2BQ7Z745 1585 aa40.54■■■■■ 4.08
PIF1-209ENST00000560504 NCAPD3P42695 1498 aa40.51■■■■■ 4.07
PIF1-209ENST00000560504 SMARCA2P51531 1590 aa40.46■■■■■ 4.07
PIF1-209ENST00000560504 PEG3Q9GZU2 1588 aa40.3■■■■■ 4.04
PIF1-209ENST00000560504 HMGXB3Q12766 1538 aa40.24■■■■■ 4.03
PIF1-209ENST00000560504 BAZ1BQ9UIG0 1483 aaKnown RBP40.21■■■■■ 4.03
PIF1-209ENST00000560504 RSF1Q96T23 1441 aaPredicted RBP40.16■■■■■ 4.02
PIF1-209ENST00000560504 WIZO95785 1651 aa40.05■■■■■ 4
PIF1-209ENST00000560504 TOP2AP11388 1531 aaKnown RBP39.65■■■■□ 3.94
PIF1-209ENST00000560504 NESP48681 1621 aa39.5■■■■□ 3.91
PIF1-209ENST00000560504 CADPSQ9ULU8 1353 aa39.38■■■■□ 3.89
PIF1-209ENST00000560504 SUPT5HO00267 1087 aaKnown RBP39.36■■■■□ 3.89
PIF1-209ENST00000560504 LAMC3Q9Y6N6 1575 aa39.35■■■■□ 3.89
PIF1-209ENST00000560504 ERCC6Q03468 1493 aa39.32■■■■□ 3.89
PIF1-209ENST00000560504 CCDC88BA6NC98 1476 aa39.25■■■■□ 3.87
PIF1-209ENST00000560504 PDS5BQ9NTI5 1447 aa39.18■■■■□ 3.86
PIF1-209ENST00000560504 CFTRP13569 1480 aa39.12■■■■□ 3.85
PIF1-209ENST00000560504 FANCD2Q9BXW9 1451 aa38.89■■■■□ 3.82
PIF1-209ENST00000560504 KIF21AQ7Z4S6 1674 aa38.88■■■■□ 3.81
PIF1-209ENST00000560504 CUX2O14529 1486 aa38.81■■■■□ 3.8
PIF1-209ENST00000560504 CEP164Q9UPV0 1460 aa38.81■■■■□ 3.8
PIF1-209ENST00000560504 THOC2Q8NI27 1593 aaKnown RBP38.76■■■■□ 3.8
PIF1-209ENST00000560504 MRC2Q9UBG0 1479 aa38.73■■■■□ 3.79
PIF1-209ENST00000560504 PRDM2Q13029 1718 aa38.58■■■■□ 3.77
PIF1-209ENST00000560504 WDR62O43379 1518 aa38.54■■■■□ 3.76
PIF1-209ENST00000560504 URB2Q14146 1524 aaKnown RBP38.47■■■■□ 3.75
PIF1-209ENST00000560504 DNAJC5Q9H3Z4 198 aa38.42■■■■□ 3.74
PIF1-209ENST00000560504 ABCC8Q09428 1581 aa38.27■■■■□ 3.72
PIF1-209ENST00000560504 TOPBP1Q92547 1522 aa38.26■■■■□ 3.72
PIF1-209ENST00000560504 DNMBPQ6XZF7 1577 aa38.19■■■■□ 3.7
PIF1-209ENST00000560504 IFT140Q96RY7 1462 aa38.01■■■■□ 3.67
PIF1-209ENST00000560504 CUX1P39880 1505 aa38.01■■■■□ 3.67
PIF1-209ENST00000560504 POLA1P09884 1462 aaPredicted RBP37.95■■■■□ 3.67
PIF1-209ENST00000560504 FGD5Q6ZNL6 1462 aa37.88■■■■□ 3.65
PIF1-209ENST00000560504 SOGA1O94964 1423 aa37.87■■■■□ 3.65
PIF1-209ENST00000560504 WRNQ14191 1432 aaPredicted RBP eCLIP37.87■■■■□ 3.65
PIF1-209ENST00000560504 ZNF608Q9ULD9 1512 aaPredicted RBP37.83■■■■□ 3.65
PIF1-209ENST00000560504 RAD54L2Q9Y4B4 1467 aa37.82■■■■□ 3.64
PIF1-209ENST00000560504 TARBP1Q13395 1621 aaKnown RBP37.77■■■■□ 3.64
PIF1-209ENST00000560504 SYNJ1O43426 1573 aa37.68■■■■□ 3.62
PIF1-209ENST00000560504 AQRO60306 1485 aaKnown RBP eCLIP37.67■■■■□ 3.62
PIF1-209ENST00000560504 TOP2BQ02880 1626 aa37.67■■■■□ 3.62
PIF1-209ENST00000560504 TDRD9Q8NDG6 1382 aaKnown RBP37.66■■■■□ 3.62
PIF1-209ENST00000560504 BIVM-ERCC5R4GMW8 1640 aa37.61■■■■□ 3.61
PIF1-209ENST00000560504 EIF4G3O43432 1585 aaKnown RBP37.59■■■■□ 3.61
PIF1-209ENST00000560504 ABCA10Q8WWZ4 1543 aa37.51■■■■□ 3.59
PIF1-209ENST00000560504 WDR97A6NE52 1622 aa37.45■■■■□ 3.59
PIF1-209ENST00000560504 GAPVD1Q14C86 1478 aa37.39■■■■□ 3.58
PIF1-209ENST00000560504 GRIN2BQ13224 1484 aa37.37■■■■□ 3.57
PIF1-209ENST00000560504 OSCARQ8IYS5 282 aa37.36■■■■□ 3.57
PIF1-209ENST00000560504 SNAPC4Q5SXM2 1469 aa37.28■■■■□ 3.56
PIF1-209ENST00000560504 FBLN2P98095 1184 aa37.28■■■■□ 3.56
PIF1-209ENST00000560504 ABCA5Q8WWZ7 1642 aa37.27■■■■□ 3.56
PIF1-209ENST00000560504 MAGI1Q96QZ7 1491 aaPredicted RBP37.21■■■■□ 3.55
PIF1-209ENST00000560504 CHMP7Q8WUX9 453 aaPredicted RBP37.18■■■■□ 3.54
PIF1-209ENST00000560504 TRIM41Q8WV44 630 aa37.15■■■■□ 3.54
PIF1-209ENST00000560504 PBRM1Q86U86 1689 aa37.12■■■■□ 3.53
PIF1-209ENST00000560504 SYNJ2O15056 1496 aa37.08■■■■□ 3.53
PIF1-209ENST00000560504 KIF27Q86VH2 1401 aa37.07■■■■□ 3.52
PIF1-209ENST00000560504 ERICH3Q5RHP9 1530 aa37.04■■■■□ 3.52
PIF1-209ENST00000560504 CHD1O14646 1710 aa37.03■■■■□ 3.52
PIF1-209ENST00000560504 FHAD1B1AJZ9 1412 aa36.97■■■■□ 3.51
PIF1-209ENST00000560504 IGF1RP08069 1367 aa36.94■■■■□ 3.5
PIF1-209ENST00000560504 ADAMTS12P58397 1594 aa36.92■■■■□ 3.5
PIF1-209ENST00000560504 GRIN2AQ12879 1464 aa36.85■■■■□ 3.49
PIF1-209ENST00000560504 RUSC2Q8N2Y8 1516 aa36.77■■■■□ 3.48
PIF1-209ENST00000560504 CHIC1Q5VXU3 224 aa36.77■■■■□ 3.48
PIF1-209ENST00000560504 CARMIL1Q5VZK9 1371 aa36.72■■■■□ 3.47
PIF1-209ENST00000560504 CLASP1Q7Z460 1538 aa36.72■■■■□ 3.47
PIF1-209ENST00000560504 NUP160Q12769 1436 aa36.69■■■■□ 3.46
PIF1-209ENST00000560504 CUL7Q14999 1698 aa36.67■■■■□ 3.46
PIF1-209ENST00000560504 CEP170Q5SW79 1584 aa36.63■■■■□ 3.45
PIF1-209ENST00000560504 ARHGEF11O15085 1522 aa36.62■■■■□ 3.45
PIF1-209ENST00000560504 RIMBP3CA6NJZ7 1639 aa36.56■■■■□ 3.44
PIF1-209ENST00000560504 RIMBP3BA6NNM3 1639 aa36.56■■■■□ 3.44
PIF1-209ENST00000560504 RIMBP3Q9UFD9 1639 aa36.56■■■■□ 3.44
PIF1-209ENST00000560504 RAPGEF2Q9Y4G8 1499 aa36.47■■■■□ 3.43
PIF1-209ENST00000560504 CSRNP3Q8WYN3 585 aa36.46■■■■□ 3.43
PIF1-209ENST00000560504 JPH4Q96JJ6 628 aa36.44■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms