RNA–Protein interactions for RNA: ENST00000560353.1

APH1B-208, Transcript of aph-1 homolog B, gamma-secretase subunit, humanhuman

TSL 3

Gene APH1B, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APH1B-208ENST00000560353 NISCHQ9Y2I1 1504 aa26.58■■□□□ 1.85
APH1B-208ENST00000560353 AEBP2Q6ZN18 517 aaPredicted RBP26■■□□□ 1.75
APH1B-208ENST00000560353 CHIC1Q5VXU3 224 aa25.32■■□□□ 1.64
APH1B-208ENST00000560353 ABCC9O60706 1549 aa24.82■■□□□ 1.56
APH1B-208ENST00000560353 CCDC180Q9P1Z9 1646 aa24.11■■□□□ 1.45
APH1B-208ENST00000560353 DNAJC5BQ9UF47 199 aa23.95■■□□□ 1.42
APH1B-208ENST00000560353 RB1CC1Q8TDY2 1594 aa23.33■■□□□ 1.33
APH1B-208ENST00000560353 PABPN1Q86U42 306 aaKnown RBP eCLIP23.05■■□□□ 1.28
APH1B-208ENST00000560353 NACADO15069 1562 aa23.01■■□□□ 1.27
APH1B-208ENST00000560353 DCAF8L2P0C7V8 631 aa22.81■■□□□ 1.24
APH1B-208ENST00000560353 UNC13AQ9UPW8 1703 aa22.67■■□□□ 1.22
APH1B-208ENST00000560353 BICRAQ9NZM4 1560 aa22.63■■□□□ 1.21
APH1B-208ENST00000560353 DNAJC5Q9H3Z4 198 aa22.57■■□□□ 1.2
APH1B-208ENST00000560353 MYO15BQ96JP2 1530 aa22.49■■□□□ 1.19
APH1B-208ENST00000560353 CECR2Q9BXF3 1484 aa22.47■■□□□ 1.19
APH1B-208ENST00000560353 SENP3Q9H4L4 574 aaPredicted RBP22.45■■□□□ 1.18
APH1B-208ENST00000560353 CC2D2AQ9P2K1 1620 aa22.36■■□□□ 1.17
APH1B-208ENST00000560353 SHROOM4Q9ULL8 1493 aa22.34■■□□□ 1.17
APH1B-208ENST00000560353 EIF4G1Q04637 1599 aaKnown RBP22.16■■□□□ 1.14
APH1B-208ENST00000560353 PHF23Q9BUL5 403 aaPredicted RBP22.08■■□□□ 1.13
APH1B-208ENST00000560353 DCAF1Q9Y4B6 1507 aa21.93■■□□□ 1.1
APH1B-208ENST00000560353 SCRIBQ14160 1630 aa21.91■■□□□ 1.1
APH1B-208ENST00000560353 ZCCHC6Q5VYS8 1495 aaKnown RBP21.85■■□□□ 1.09
APH1B-208ENST00000560353 CUX2O14529 1486 aa21.71■■□□□ 1.07
APH1B-208ENST00000560353 ERCC6Q03468 1493 aa21.52■■□□□ 1.03
APH1B-208ENST00000560353 NCAPD3P42695 1498 aa21.29■■□□□ 1
APH1B-208ENST00000560353 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
APH1B-208ENST00000560353 NESP48681 1621 aa21.11■□□□□ 0.97
APH1B-208ENST00000560353 ATAD2BQ9ULI0 1458 aa21.08■□□□□ 0.97
APH1B-208ENST00000560353 HMGXB3Q12766 1538 aa21.01■□□□□ 0.95
APH1B-208ENST00000560353 SMARCA2P51531 1590 aa21■□□□□ 0.95
APH1B-208ENST00000560353 THOC2Q8NI27 1593 aaKnown RBP20.99■□□□□ 0.95
APH1B-208ENST00000560353 LAMC3Q9Y6N6 1575 aa20.88■□□□□ 0.93
APH1B-208ENST00000560353 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
APH1B-208ENST00000560353 SMARCA4P51532 1647 aa20.84■□□□□ 0.93
APH1B-208ENST00000560353 PDS5BQ9NTI5 1447 aa20.84■□□□□ 0.93
APH1B-208ENST00000560353 KIF21AQ7Z4S6 1674 aa20.75■□□□□ 0.91
APH1B-208ENST00000560353 OSCARQ8IYS5 282 aa20.68■□□□□ 0.9
APH1B-208ENST00000560353 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
APH1B-208ENST00000560353 PEG3Q9GZU2 1588 aa20.67■□□□□ 0.9
APH1B-208ENST00000560353 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
APH1B-208ENST00000560353 FOXD1Q16676 465 aa20.64■□□□□ 0.89
APH1B-208ENST00000560353 CADPSQ9ULU8 1353 aa20.61■□□□□ 0.89
APH1B-208ENST00000560353 WDR62O43379 1518 aa20.6■□□□□ 0.89
APH1B-208ENST00000560353 PLPPR3Q6T4P5 718 aa20.58■□□□□ 0.89
APH1B-208ENST00000560353 MROH2BQ7Z745 1585 aa20.45■□□□□ 0.86
APH1B-208ENST00000560353 CEP164Q9UPV0 1460 aa20.43■□□□□ 0.86
APH1B-208ENST00000560353 RIMBP3CA6NJZ7 1639 aa20.36■□□□□ 0.85
APH1B-208ENST00000560353 RIMBP3BA6NNM3 1639 aa20.36■□□□□ 0.85
APH1B-208ENST00000560353 RIMBP3Q9UFD9 1639 aa20.36■□□□□ 0.85
APH1B-208ENST00000560353 FANCD2Q9BXW9 1451 aa20.35■□□□□ 0.85
APH1B-208ENST00000560353 ARHGEF11O15085 1522 aa20.25■□□□□ 0.83
APH1B-208ENST00000560353 TRHP20396 242 aaPredicted RBP20.24■□□□□ 0.83
APH1B-208ENST00000560353 CYB5RLQ6IPT4 315 aa20.22■□□□□ 0.83
APH1B-208ENST00000560353 CFTRP13569 1480 aa20.2■□□□□ 0.82
APH1B-208ENST00000560353 URB2Q14146 1524 aaKnown RBP20.2■□□□□ 0.82
APH1B-208ENST00000560353 WIZO95785 1651 aa20.13■□□□□ 0.81
APH1B-208ENST00000560353 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
APH1B-208ENST00000560353 IFT140Q96RY7 1462 aa20.06■□□□□ 0.8
APH1B-208ENST00000560353 ARAP1Q96P48 1450 aa19.99■□□□□ 0.79
APH1B-208ENST00000560353 RSF1Q96T23 1441 aaPredicted RBP19.93■□□□□ 0.78
APH1B-208ENST00000560353 EIF4G3O43432 1585 aaKnown RBP19.88■□□□□ 0.77
APH1B-208ENST00000560353 FBLN2P98095 1184 aa19.88■□□□□ 0.77
APH1B-208ENST00000560353 TOP2AP11388 1531 aaKnown RBP19.86■□□□□ 0.77
APH1B-208ENST00000560353 TOPBP1Q92547 1522 aa19.86■□□□□ 0.77
APH1B-208ENST00000560353 ABCC8Q09428 1581 aa19.84■□□□□ 0.77
APH1B-208ENST00000560353 CHD1O14646 1710 aa19.83■□□□□ 0.77
APH1B-208ENST00000560353 AQRO60306 1485 aaKnown RBP eCLIP19.82■□□□□ 0.76
APH1B-208ENST00000560353 PRDM2Q13029 1718 aa19.81■□□□□ 0.76
APH1B-208ENST00000560353 DNMBPQ6XZF7 1577 aa19.72■□□□□ 0.75
APH1B-208ENST00000560353 TARBP1Q13395 1621 aaKnown RBP19.72■□□□□ 0.75
APH1B-208ENST00000560353 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
APH1B-208ENST00000560353 CLASP1Q7Z460 1538 aa19.65■□□□□ 0.74
APH1B-208ENST00000560353 CHMP7Q8WUX9 453 aaPredicted RBP19.64■□□□□ 0.73
APH1B-208ENST00000560353 POLA1P09884 1462 aaPredicted RBP19.61■□□□□ 0.73
APH1B-208ENST00000560353 TDRD9Q8NDG6 1382 aaKnown RBP19.6■□□□□ 0.73
APH1B-208ENST00000560353 SYNJ1O43426 1573 aa19.59■□□□□ 0.73
APH1B-208ENST00000560353 ADRA2BP18089 450 aa19.58■□□□□ 0.72
APH1B-208ENST00000560353 SNAPC4Q5SXM2 1469 aa19.57■□□□□ 0.72
APH1B-208ENST00000560353 SOGA1O94964 1423 aa19.57■□□□□ 0.72
APH1B-208ENST00000560353 RAD54L2Q9Y4B4 1467 aa19.55■□□□□ 0.72
APH1B-208ENST00000560353 PIAS4Q8N2W9 510 aaPredicted RBP19.55■□□□□ 0.72
APH1B-208ENST00000560353 GAPVD1Q14C86 1478 aa19.54■□□□□ 0.72
APH1B-208ENST00000560353 MAGI1Q96QZ7 1491 aaPredicted RBP19.53■□□□□ 0.72
APH1B-208ENST00000560353 PPP6R1Q9UPN7 881 aa19.52■□□□□ 0.72
APH1B-208ENST00000560353 WDR97A6NE52 1622 aa19.5■□□□□ 0.71
APH1B-208ENST00000560353 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
APH1B-208ENST00000560353 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
APH1B-208ENST00000560353 MSH5O43196 834 aa19.43■□□□□ 0.7
APH1B-208ENST00000560353 FGD5Q6ZNL6 1462 aa19.39■□□□□ 0.69
APH1B-208ENST00000560353 ILDR1Q86SU0 546 aaPredicted RBP19.36■□□□□ 0.69
APH1B-208ENST00000560353 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.67
APH1B-208ENST00000560353 CUX1P39880 1505 aa19.25■□□□□ 0.67
APH1B-208ENST00000560353 PBRM1Q86U86 1689 aa19.22■□□□□ 0.67
APH1B-208ENST00000560353 KDM4FA0A1W2PPD8 638 aa19.21■□□□□ 0.67
APH1B-208ENST00000560353 CEP170Q5SW79 1584 aa19.2■□□□□ 0.66
APH1B-208ENST00000560353 KIF13AQ9H1H9 1805 aa19.19■□□□□ 0.66
APH1B-208ENST00000560353 GRIN2AQ12879 1464 aa19.19■□□□□ 0.66
APH1B-208ENST00000560353 FAM69CQ0P6D2 419 aa19.17■□□□□ 0.66
APH1B-208ENST00000560353 NUP160Q12769 1436 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms