RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 NISCHQ9Y2I1 1504 aa28.8■■■□□ 2.2
RABGGTA-215ENST00000560207 CCDC180Q9P1Z9 1646 aa25.65■■□□□ 1.7
RABGGTA-215ENST00000560207 ABCC9O60706 1549 aa24.63■■□□□ 1.53
RABGGTA-215ENST00000560207 NACADO15069 1562 aa24.03■■□□□ 1.44
RABGGTA-215ENST00000560207 ZCCHC6Q5VYS8 1495 aaKnown RBP24.03■■□□□ 1.44
RABGGTA-215ENST00000560207 MYO15BQ96JP2 1530 aa24.01■■□□□ 1.43
RABGGTA-215ENST00000560207 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
RABGGTA-215ENST00000560207 DCAF1Q9Y4B6 1507 aa23.96■■□□□ 1.43
RABGGTA-215ENST00000560207 DCAF8L2P0C7V8 631 aa23.85■■□□□ 1.41
RABGGTA-215ENST00000560207 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
RABGGTA-215ENST00000560207 SCRIBQ14160 1630 aa23.22■■□□□ 1.31
RABGGTA-215ENST00000560207 SHROOM4Q9ULL8 1493 aa23.13■■□□□ 1.29
RABGGTA-215ENST00000560207 BICRAQ9NZM4 1560 aa23.12■■□□□ 1.29
RABGGTA-215ENST00000560207 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
RABGGTA-215ENST00000560207 EIF4G1Q04637 1599 aaKnown RBP22.54■■□□□ 1.2
RABGGTA-215ENST00000560207 CC2D2AQ9P2K1 1620 aa22.38■■□□□ 1.17
RABGGTA-215ENST00000560207 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
RABGGTA-215ENST00000560207 SMARCA4P51532 1647 aa22.31■■□□□ 1.16
RABGGTA-215ENST00000560207 DNAJC5BQ9UF47 199 aa22.29■■□□□ 1.16
RABGGTA-215ENST00000560207 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
RABGGTA-215ENST00000560207 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
RABGGTA-215ENST00000560207 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
RABGGTA-215ENST00000560207 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
RABGGTA-215ENST00000560207 NCAPD3P42695 1498 aa22.11■■□□□ 1.13
RABGGTA-215ENST00000560207 ATAD2BQ9ULI0 1458 aa22.09■■□□□ 1.13
RABGGTA-215ENST00000560207 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
RABGGTA-215ENST00000560207 RSF1Q96T23 1441 aaPredicted RBP21.97■■□□□ 1.11
RABGGTA-215ENST00000560207 BAZ1BQ9UIG0 1483 aaKnown RBP21.96■■□□□ 1.11
RABGGTA-215ENST00000560207 WIZO95785 1651 aa21.91■■□□□ 1.1
RABGGTA-215ENST00000560207 TOP2AP11388 1531 aaKnown RBP21.76■■□□□ 1.07
RABGGTA-215ENST00000560207 LAMC3Q9Y6N6 1575 aa21.55■■□□□ 1.04
RABGGTA-215ENST00000560207 SUPT5HO00267 1087 aaKnown RBP21.5■■□□□ 1.03
RABGGTA-215ENST00000560207 CADPSQ9ULU8 1353 aa21.45■■□□□ 1.02
RABGGTA-215ENST00000560207 CCDC88BA6NC98 1476 aa21.44■■□□□ 1.02
RABGGTA-215ENST00000560207 PRDM2Q13029 1718 aa21.38■■□□□ 1.01
RABGGTA-215ENST00000560207 CFTRP13569 1480 aa21.38■■□□□ 1.01
RABGGTA-215ENST00000560207 PDS5BQ9NTI5 1447 aa21.38■■□□□ 1.01
RABGGTA-215ENST00000560207 NESP48681 1621 aa21.34■■□□□ 1.01
RABGGTA-215ENST00000560207 ERCC6Q03468 1493 aa21.32■■□□□ 1
RABGGTA-215ENST00000560207 KIF21AQ7Z4S6 1674 aa21.23■□□□□ 0.99
RABGGTA-215ENST00000560207 FANCD2Q9BXW9 1451 aa21.18■□□□□ 0.98
RABGGTA-215ENST00000560207 CEP164Q9UPV0 1460 aa21.17■□□□□ 0.98
RABGGTA-215ENST00000560207 THOC2Q8NI27 1593 aaKnown RBP21.09■□□□□ 0.97
RABGGTA-215ENST00000560207 MRC2Q9UBG0 1479 aa21.08■□□□□ 0.97
RABGGTA-215ENST00000560207 CUX2O14529 1486 aa21.07■□□□□ 0.96
RABGGTA-215ENST00000560207 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
RABGGTA-215ENST00000560207 WDR62O43379 1518 aa21.02■□□□□ 0.96
RABGGTA-215ENST00000560207 DNMBPQ6XZF7 1577 aa20.92■□□□□ 0.94
RABGGTA-215ENST00000560207 URB2Q14146 1524 aaKnown RBP20.91■□□□□ 0.94
RABGGTA-215ENST00000560207 TOPBP1Q92547 1522 aa20.87■□□□□ 0.93
RABGGTA-215ENST00000560207 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
RABGGTA-215ENST00000560207 CUX1P39880 1505 aa20.75■□□□□ 0.91
RABGGTA-215ENST00000560207 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
RABGGTA-215ENST00000560207 IFT140Q96RY7 1462 aa20.74■□□□□ 0.91
RABGGTA-215ENST00000560207 TOP2BQ02880 1626 aa20.73■□□□□ 0.91
RABGGTA-215ENST00000560207 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
RABGGTA-215ENST00000560207 FGD5Q6ZNL6 1462 aa20.67■□□□□ 0.9
RABGGTA-215ENST00000560207 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
RABGGTA-215ENST00000560207 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.9
RABGGTA-215ENST00000560207 SOGA1O94964 1423 aa20.63■□□□□ 0.89
RABGGTA-215ENST00000560207 SYNJ1O43426 1573 aa20.63■□□□□ 0.89
RABGGTA-215ENST00000560207 ABCA10Q8WWZ4 1543 aa20.54■□□□□ 0.88
RABGGTA-215ENST00000560207 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
RABGGTA-215ENST00000560207 EIF4G3O43432 1585 aaKnown RBP20.51■□□□□ 0.87
RABGGTA-215ENST00000560207 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
RABGGTA-215ENST00000560207 ABCA5Q8WWZ7 1642 aa20.43■□□□□ 0.86
RABGGTA-215ENST00000560207 TRIM41Q8WV44 630 aa20.41■□□□□ 0.86
RABGGTA-215ENST00000560207 TDRD9Q8NDG6 1382 aaKnown RBP20.41■□□□□ 0.86
RABGGTA-215ENST00000560207 AQRO60306 1485 aaKnown RBP eCLIP20.41■□□□□ 0.86
RABGGTA-215ENST00000560207 GAPVD1Q14C86 1478 aa20.41■□□□□ 0.86
RABGGTA-215ENST00000560207 GRIN2BQ13224 1484 aa20.4■□□□□ 0.86
RABGGTA-215ENST00000560207 PBRM1Q86U86 1689 aa20.4■□□□□ 0.86
RABGGTA-215ENST00000560207 MAGI1Q96QZ7 1491 aaPredicted RBP20.37■□□□□ 0.85
RABGGTA-215ENST00000560207 KIF27Q86VH2 1401 aa20.36■□□□□ 0.85
RABGGTA-215ENST00000560207 ERICH3Q5RHP9 1530 aa20.34■□□□□ 0.85
RABGGTA-215ENST00000560207 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
RABGGTA-215ENST00000560207 SYNJ2O15056 1496 aa20.24■□□□□ 0.83
RABGGTA-215ENST00000560207 CUL7Q14999 1698 aa20.24■□□□□ 0.83
RABGGTA-215ENST00000560207 CHD1O14646 1710 aa20.23■□□□□ 0.83
RABGGTA-215ENST00000560207 CHIC1Q5VXU3 224 aa20.22■□□□□ 0.83
RABGGTA-215ENST00000560207 FHAD1B1AJZ9 1412 aa20.21■□□□□ 0.83
RABGGTA-215ENST00000560207 OSCARQ8IYS5 282 aa20.21■□□□□ 0.83
RABGGTA-215ENST00000560207 DNAJC5Q9H3Z4 198 aa20.2■□□□□ 0.82
RABGGTA-215ENST00000560207 ADAMTS12P58397 1594 aa20.2■□□□□ 0.82
RABGGTA-215ENST00000560207 CHMP7Q8WUX9 453 aaPredicted RBP20.19■□□□□ 0.82
RABGGTA-215ENST00000560207 EEA1Q15075 1411 aa20.19■□□□□ 0.82
RABGGTA-215ENST00000560207 IGF1RP08069 1367 aa20.16■□□□□ 0.82
RABGGTA-215ENST00000560207 FBLN2P98095 1184 aa20.14■□□□□ 0.81
RABGGTA-215ENST00000560207 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
RABGGTA-215ENST00000560207 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.8
RABGGTA-215ENST00000560207 RUSC2Q8N2Y8 1516 aa20.03■□□□□ 0.8
RABGGTA-215ENST00000560207 NUP160Q12769 1436 aa20.02■□□□□ 0.79
RABGGTA-215ENST00000560207 RAPGEF2Q9Y4G8 1499 aa20.01■□□□□ 0.79
RABGGTA-215ENST00000560207 CSRNP3Q8WYN3 585 aa20■□□□□ 0.79
RABGGTA-215ENST00000560207 CLASP1Q7Z460 1538 aa19.99■□□□□ 0.79
RABGGTA-215ENST00000560207 PRXQ9BXM0 1461 aa19.96■□□□□ 0.79
RABGGTA-215ENST00000560207 CEP170Q5SW79 1584 aa19.95■□□□□ 0.78
RABGGTA-215ENST00000560207 KIAA0586Q9BVV6 1533 aa19.92■□□□□ 0.78
RABGGTA-215ENST00000560207 KIF21BO75037 1637 aa19.9■□□□□ 0.78
RABGGTA-215ENST00000560207 CTTNBP2Q8WZ74 1663 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms