RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NISCHQ9Y2I1 1504 aa25.88■■□□□ 1.73
USP3-218ENST00000560202 CCDC180Q9P1Z9 1646 aa22.64■■□□□ 1.21
USP3-218ENST00000560202 ZCCHC6Q5VYS8 1495 aaKnown RBP21.69■■□□□ 1.06
USP3-218ENST00000560202 ABCC9O60706 1549 aa21.63■■□□□ 1.05
USP3-218ENST00000560202 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
USP3-218ENST00000560202 DCAF1Q9Y4B6 1507 aa21.4■■□□□ 1.02
USP3-218ENST00000560202 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
USP3-218ENST00000560202 NACADO15069 1562 aa21.16■□□□□ 0.98
USP3-218ENST00000560202 RB1CC1Q8TDY2 1594 aa21.02■□□□□ 0.96
USP3-218ENST00000560202 SHROOM4Q9ULL8 1493 aa20.94■□□□□ 0.94
USP3-218ENST00000560202 SCRIBQ14160 1630 aa20.78■□□□□ 0.92
USP3-218ENST00000560202 UNC13AQ9UPW8 1703 aa20.52■□□□□ 0.88
USP3-218ENST00000560202 BICRAQ9NZM4 1560 aa20.38■□□□□ 0.85
USP3-218ENST00000560202 PABPN1Q86U42 306 aaKnown RBP eCLIP20.36■□□□□ 0.85
USP3-218ENST00000560202 CECR2Q9BXF3 1484 aa20.12■□□□□ 0.81
USP3-218ENST00000560202 SUPT5HO00267 1087 aaKnown RBP20.06■□□□□ 0.8
USP3-218ENST00000560202 RSF1Q96T23 1441 aaPredicted RBP20■□□□□ 0.79
USP3-218ENST00000560202 BAZ1AQ9NRL2 1556 aaPredicted RBP20■□□□□ 0.79
USP3-218ENST00000560202 MROH2BQ7Z745 1585 aa19.98■□□□□ 0.79
USP3-218ENST00000560202 SMARCA4P51532 1647 aa19.92■□□□□ 0.78
USP3-218ENST00000560202 EIF4G1Q04637 1599 aaKnown RBP19.79■□□□□ 0.76
USP3-218ENST00000560202 WIZO95785 1651 aa19.78■□□□□ 0.76
USP3-218ENST00000560202 PEG3Q9GZU2 1588 aa19.7■□□□□ 0.74
USP3-218ENST00000560202 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
USP3-218ENST00000560202 SMARCA2P51531 1590 aa19.64■□□□□ 0.74
USP3-218ENST00000560202 TOP2AP11388 1531 aaKnown RBP19.59■□□□□ 0.73
USP3-218ENST00000560202 NCAPD3P42695 1498 aa19.55■□□□□ 0.72
USP3-218ENST00000560202 CC2D2AQ9P2K1 1620 aa19.55■□□□□ 0.72
USP3-218ENST00000560202 BAZ1BQ9UIG0 1483 aaKnown RBP19.54■□□□□ 0.72
USP3-218ENST00000560202 HMGXB3Q12766 1538 aa19.48■□□□□ 0.71
USP3-218ENST00000560202 CCDC88BA6NC98 1476 aa19.4■□□□□ 0.7
USP3-218ENST00000560202 DNAJC5BQ9UF47 199 aa19.28■□□□□ 0.68
USP3-218ENST00000560202 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
USP3-218ENST00000560202 CFTRP13569 1480 aa19.05■□□□□ 0.64
USP3-218ENST00000560202 CADPSQ9ULU8 1353 aa19.04■□□□□ 0.64
USP3-218ENST00000560202 AEBP2Q6ZN18 517 aaPredicted RBP18.98■□□□□ 0.63
USP3-218ENST00000560202 NESP48681 1621 aa18.9■□□□□ 0.62
USP3-218ENST00000560202 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
USP3-218ENST00000560202 ABCC8Q09428 1581 aa18.89■□□□□ 0.61
USP3-218ENST00000560202 TRIM41Q8WV44 630 aa18.89■□□□□ 0.61
USP3-218ENST00000560202 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
USP3-218ENST00000560202 WRNQ14191 1432 aaPredicted RBP eCLIP18.83■□□□□ 0.61
USP3-218ENST00000560202 FANCD2Q9BXW9 1451 aa18.81■□□□□ 0.6
USP3-218ENST00000560202 PDS5BQ9NTI5 1447 aa18.78■□□□□ 0.6
USP3-218ENST00000560202 SYNJ1O43426 1573 aa18.73■□□□□ 0.59
USP3-218ENST00000560202 CEP164Q9UPV0 1460 aa18.71■□□□□ 0.59
USP3-218ENST00000560202 CUX1P39880 1505 aa18.68■□□□□ 0.58
USP3-218ENST00000560202 TOP2BQ02880 1626 aa18.68■□□□□ 0.58
USP3-218ENST00000560202 BIVM-ERCC5R4GMW8 1640 aa18.65■□□□□ 0.58
USP3-218ENST00000560202 KIF21AQ7Z4S6 1674 aa18.64■□□□□ 0.57
USP3-218ENST00000560202 DNMBPQ6XZF7 1577 aa18.59■□□□□ 0.57
USP3-218ENST00000560202 URB2Q14146 1524 aaKnown RBP18.58■□□□□ 0.56
USP3-218ENST00000560202 TOPBP1Q92547 1522 aa18.58■□□□□ 0.56
USP3-218ENST00000560202 ERCC6Q03468 1493 aa18.57■□□□□ 0.56
USP3-218ENST00000560202 MRC2Q9UBG0 1479 aa18.54■□□□□ 0.56
USP3-218ENST00000560202 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
USP3-218ENST00000560202 FAM9AQ8IZU1 332 aaPredicted RBP18.52■□□□□ 0.56
USP3-218ENST00000560202 SOGA1O94964 1423 aa18.52■□□□□ 0.56
USP3-218ENST00000560202 POLA1P09884 1462 aaPredicted RBP18.47■□□□□ 0.55
USP3-218ENST00000560202 EEA1Q15075 1411 aa18.46■□□□□ 0.55
USP3-218ENST00000560202 RUSC2Q8N2Y8 1516 aa18.45■□□□□ 0.54
USP3-218ENST00000560202 WDR62O43379 1518 aa18.44■□□□□ 0.54
USP3-218ENST00000560202 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
USP3-218ENST00000560202 RAD54L2Q9Y4B4 1467 aa18.4■□□□□ 0.54
USP3-218ENST00000560202 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
USP3-218ENST00000560202 KIF27Q86VH2 1401 aa18.38■□□□□ 0.53
USP3-218ENST00000560202 CUX2O14529 1486 aa18.37■□□□□ 0.53
USP3-218ENST00000560202 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
USP3-218ENST00000560202 LOC105371045A0A1W2PR82 267 aa18.34■□□□□ 0.53
USP3-218ENST00000560202 TARBP1Q13395 1621 aaKnown RBP18.31■□□□□ 0.52
USP3-218ENST00000560202 IFT140Q96RY7 1462 aa18.29■□□□□ 0.52
USP3-218ENST00000560202 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
USP3-218ENST00000560202 TDRD9Q8NDG6 1382 aaKnown RBP18.26■□□□□ 0.51
USP3-218ENST00000560202 EHMT2Q96KQ7 1210 aa18.25■□□□□ 0.51
USP3-218ENST00000560202 IGF1RP08069 1367 aa18.25■□□□□ 0.51
USP3-218ENST00000560202 ABCA5Q8WWZ7 1642 aa18.21■□□□□ 0.51
USP3-218ENST00000560202 GAPVD1Q14C86 1478 aa18.21■□□□□ 0.51
USP3-218ENST00000560202 PRXQ9BXM0 1461 aa18.19■□□□□ 0.5
USP3-218ENST00000560202 KIF21BO75037 1637 aa18.19■□□□□ 0.5
USP3-218ENST00000560202 AQRO60306 1485 aaKnown RBP eCLIP18.18■□□□□ 0.5
USP3-218ENST00000560202 GOLGA3Q08378 1498 aa18.18■□□□□ 0.5
USP3-218ENST00000560202 ZNF608Q9ULD9 1512 aaPredicted RBP18.18■□□□□ 0.5
USP3-218ENST00000560202 RAPGEF2Q9Y4G8 1499 aa18.15■□□□□ 0.5
USP3-218ENST00000560202 CARMIL1Q5VZK9 1371 aa18.15■□□□□ 0.5
USP3-218ENST00000560202 ERICH3Q5RHP9 1530 aa18.14■□□□□ 0.5
USP3-218ENST00000560202 UBTFP17480 764 aaKnown RBP18.12■□□□□ 0.49
USP3-218ENST00000560202 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
USP3-218ENST00000560202 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
USP3-218ENST00000560202 TNIKQ9UKE5 1360 aa18.09■□□□□ 0.49
USP3-218ENST00000560202 CUL7Q14999 1698 aa18.08■□□□□ 0.49
USP3-218ENST00000560202 PBRM1Q86U86 1689 aa18.07■□□□□ 0.48
USP3-218ENST00000560202 FHAD1B1AJZ9 1412 aa18.02■□□□□ 0.48
USP3-218ENST00000560202 SNAPC4Q5SXM2 1469 aa18■□□□□ 0.47
USP3-218ENST00000560202 ADAMTS12P58397 1594 aa17.99■□□□□ 0.47
USP3-218ENST00000560202 MAGI1Q96QZ7 1491 aaPredicted RBP17.98■□□□□ 0.47
USP3-218ENST00000560202 CEP162Q5TB80 1403 aa17.96■□□□□ 0.47
USP3-218ENST00000560202 SYNJ2O15056 1496 aa17.9■□□□□ 0.46
USP3-218ENST00000560202 CHMP7Q8WUX9 453 aaPredicted RBP17.9■□□□□ 0.46
USP3-218ENST00000560202 CLIP1P30622 1438 aa17.88■□□□□ 0.45
USP3-218ENST00000560202 GRIN2AQ12879 1464 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms