RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 NISCHQ9Y2I1 1504 aa20.58■□□□□ 0.88
LRRC28-215ENST00000559774 CCDC180Q9P1Z9 1646 aa18.16■□□□□ 0.5
LRRC28-215ENST00000559774 ABCC9O60706 1549 aa17.47■□□□□ 0.39
LRRC28-215ENST00000559774 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
LRRC28-215ENST00000559774 MYO15BQ96JP2 1530 aa17.12■□□□□ 0.33
LRRC28-215ENST00000559774 DCAF1Q9Y4B6 1507 aa17.11■□□□□ 0.33
LRRC28-215ENST00000559774 NACADO15069 1562 aa17.06■□□□□ 0.32
LRRC28-215ENST00000559774 DCAF8L2P0C7V8 631 aa17.02■□□□□ 0.32
LRRC28-215ENST00000559774 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
LRRC28-215ENST00000559774 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
LRRC28-215ENST00000559774 UNC13AQ9UPW8 1703 aa16.45■□□□□ 0.22
LRRC28-215ENST00000559774 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
LRRC28-215ENST00000559774 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
LRRC28-215ENST00000559774 PABPN1Q86U42 306 aaKnown RBP eCLIP16.37■□□□□ 0.21
LRRC28-215ENST00000559774 EIF4G1Q04637 1599 aaKnown RBP15.97■□□□□ 0.15
LRRC28-215ENST00000559774 BAZ1AQ9NRL2 1556 aaPredicted RBP15.95■□□□□ 0.14
LRRC28-215ENST00000559774 CECR2Q9BXF3 1484 aa15.94■□□□□ 0.14
LRRC28-215ENST00000559774 SMARCA4P51532 1647 aa15.87■□□□□ 0.13
LRRC28-215ENST00000559774 AEBP2Q6ZN18 517 aaPredicted RBP15.82■□□□□ 0.12
LRRC28-215ENST00000559774 MROH2BQ7Z745 1585 aa15.82■□□□□ 0.12
LRRC28-215ENST00000559774 CC2D2AQ9P2K1 1620 aa15.82■□□□□ 0.12
LRRC28-215ENST00000559774 DNAJC5BQ9UF47 199 aa15.8■□□□□ 0.12
LRRC28-215ENST00000559774 PEG3Q9GZU2 1588 aa15.79■□□□□ 0.12
LRRC28-215ENST00000559774 RSF1Q96T23 1441 aaPredicted RBP15.78■□□□□ 0.12
LRRC28-215ENST00000559774 SMARCA2P51531 1590 aa15.78■□□□□ 0.12
LRRC28-215ENST00000559774 NCAPD3P42695 1498 aa15.77■□□□□ 0.11
LRRC28-215ENST00000559774 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.11
LRRC28-215ENST00000559774 HMGXB3Q12766 1538 aa15.68■□□□□ 0.1
LRRC28-215ENST00000559774 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
LRRC28-215ENST00000559774 WIZO95785 1651 aa15.6■□□□□ 0.09
LRRC28-215ENST00000559774 TOP2AP11388 1531 aaKnown RBP15.53■□□□□ 0.08
LRRC28-215ENST00000559774 SUPT5HO00267 1087 aaKnown RBP15.51■□□□□ 0.07
LRRC28-215ENST00000559774 CCDC88BA6NC98 1476 aa15.35■□□□□ 0.05
LRRC28-215ENST00000559774 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
LRRC28-215ENST00000559774 LAMC3Q9Y6N6 1575 aa15.27■□□□□ 0.03
LRRC28-215ENST00000559774 CFTRP13569 1480 aa15.27■□□□□ 0.03
LRRC28-215ENST00000559774 PDS5BQ9NTI5 1447 aa15.19■□□□□ 0.02
LRRC28-215ENST00000559774 NESP48681 1621 aa15.17■□□□□ 0.02
LRRC28-215ENST00000559774 FANCD2Q9BXW9 1451 aa15.08■□□□□ 0.01
LRRC28-215ENST00000559774 ERCC6Q03468 1493 aa15.07■□□□□ 0
LRRC28-215ENST00000559774 CHIC1Q5VXU3 224 aa15.05■□□□□ -0
LRRC28-215ENST00000559774 PRDM2Q13029 1718 aa15.04■□□□□ -0
LRRC28-215ENST00000559774 CEP164Q9UPV0 1460 aa15.04■□□□□ -0
LRRC28-215ENST00000559774 MRC2Q9UBG0 1479 aa14.97□□□□□ -0.01
LRRC28-215ENST00000559774 ABCC8Q09428 1581 aa14.97□□□□□ -0.01
LRRC28-215ENST00000559774 KIF21AQ7Z4S6 1674 aa14.97□□□□□ -0.01
LRRC28-215ENST00000559774 WDR62O43379 1518 aa14.91□□□□□ -0.02
LRRC28-215ENST00000559774 THOC2Q8NI27 1593 aaKnown RBP14.9□□□□□ -0.02
LRRC28-215ENST00000559774 URB2Q14146 1524 aaKnown RBP14.89□□□□□ -0.03
LRRC28-215ENST00000559774 CUX2O14529 1486 aa14.89□□□□□ -0.03
LRRC28-215ENST00000559774 WRNQ14191 1432 aaPredicted RBP eCLIP14.88□□□□□ -0.03
LRRC28-215ENST00000559774 DNMBPQ6XZF7 1577 aa14.87□□□□□ -0.03
LRRC28-215ENST00000559774 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
LRRC28-215ENST00000559774 CUX1P39880 1505 aa14.82□□□□□ -0.04
LRRC28-215ENST00000559774 TOP2BQ02880 1626 aa14.79□□□□□ -0.04
LRRC28-215ENST00000559774 BIVM-ERCC5R4GMW8 1640 aa14.77□□□□□ -0.05
LRRC28-215ENST00000559774 POLA1P09884 1462 aaPredicted RBP14.76□□□□□ -0.05
LRRC28-215ENST00000559774 IFT140Q96RY7 1462 aa14.75□□□□□ -0.05
LRRC28-215ENST00000559774 SYNJ1O43426 1573 aa14.74□□□□□ -0.05
LRRC28-215ENST00000559774 FGD5Q6ZNL6 1462 aa14.74□□□□□ -0.05
LRRC28-215ENST00000559774 SOGA1O94964 1423 aa14.73□□□□□ -0.05
LRRC28-215ENST00000559774 TRIM41Q8WV44 630 aa14.71□□□□□ -0.05
LRRC28-215ENST00000559774 ABCA10Q8WWZ4 1543 aa14.66□□□□□ -0.06
LRRC28-215ENST00000559774 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
LRRC28-215ENST00000559774 WDR97A6NE52 1622 aa14.65□□□□□ -0.06
LRRC28-215ENST00000559774 RAD54L2Q9Y4B4 1467 aa14.64□□□□□ -0.07
LRRC28-215ENST00000559774 ZNF608Q9ULD9 1512 aaPredicted RBP14.58□□□□□ -0.08
LRRC28-215ENST00000559774 TDRD9Q8NDG6 1382 aaKnown RBP14.58□□□□□ -0.08
LRRC28-215ENST00000559774 KIF27Q86VH2 1401 aa14.57□□□□□ -0.08
LRRC28-215ENST00000559774 AQRO60306 1485 aaKnown RBP eCLIP14.55□□□□□ -0.08
LRRC28-215ENST00000559774 GAPVD1Q14C86 1478 aa14.55□□□□□ -0.08
LRRC28-215ENST00000559774 GRIN2BQ13224 1484 aa14.53□□□□□ -0.08
LRRC28-215ENST00000559774 ABCA5Q8WWZ7 1642 aa14.52□□□□□ -0.08
LRRC28-215ENST00000559774 EIF4G3O43432 1585 aaKnown RBP14.52□□□□□ -0.08
LRRC28-215ENST00000559774 EEA1Q15075 1411 aa14.51□□□□□ -0.09
LRRC28-215ENST00000559774 ERICH3Q5RHP9 1530 aa14.51□□□□□ -0.09
LRRC28-215ENST00000559774 MAGI1Q96QZ7 1491 aaPredicted RBP14.48□□□□□ -0.09
LRRC28-215ENST00000559774 IGF1RP08069 1367 aa14.47□□□□□ -0.09
LRRC28-215ENST00000559774 FHAD1B1AJZ9 1412 aa14.42□□□□□ -0.1
LRRC28-215ENST00000559774 SNAPC4Q5SXM2 1469 aa14.42□□□□□ -0.1
LRRC28-215ENST00000559774 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
LRRC28-215ENST00000559774 SYNJ2O15056 1496 aa14.41□□□□□ -0.1
LRRC28-215ENST00000559774 RUSC2Q8N2Y8 1516 aa14.41□□□□□ -0.1
LRRC28-215ENST00000559774 PBRM1Q86U86 1689 aa14.4□□□□□ -0.1
LRRC28-215ENST00000559774 CARMIL1Q5VZK9 1371 aa14.39□□□□□ -0.11
LRRC28-215ENST00000559774 CHMP7Q8WUX9 453 aaPredicted RBP14.38□□□□□ -0.11
LRRC28-215ENST00000559774 CUL7Q14999 1698 aa14.38□□□□□ -0.11
LRRC28-215ENST00000559774 ADAMTS12P58397 1594 aa14.36□□□□□ -0.11
LRRC28-215ENST00000559774 PRXQ9BXM0 1461 aa14.35□□□□□ -0.11
LRRC28-215ENST00000559774 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
LRRC28-215ENST00000559774 GRIN2AQ12879 1464 aa14.32□□□□□ -0.12
LRRC28-215ENST00000559774 RAPGEF2Q9Y4G8 1499 aa14.32□□□□□ -0.12
LRRC28-215ENST00000559774 FBLN2P98095 1184 aa14.32□□□□□ -0.12
LRRC28-215ENST00000559774 FAM9AQ8IZU1 332 aaPredicted RBP14.29□□□□□ -0.12
LRRC28-215ENST00000559774 NUP160Q12769 1436 aa14.28□□□□□ -0.12
LRRC28-215ENST00000559774 KIF21BO75037 1637 aa14.25□□□□□ -0.13
LRRC28-215ENST00000559774 CHD1O14646 1710 aa14.24□□□□□ -0.13
LRRC28-215ENST00000559774 KIAA0586Q9BVV6 1533 aa14.22□□□□□ -0.13
LRRC28-215ENST00000559774 GOLGA3Q08378 1498 aa14.2□□□□□ -0.14
LRRC28-215ENST00000559774 CEP170Q5SW79 1584 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms