RNA–Protein interactions for RNA: ENST00000559309.5

SNRPA1-207, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5

Gene SNRPA1, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-207ENST00000559309 NISCHQ9Y2I1 1504 aa35.54■■■■□ 3.28
SNRPA1-207ENST00000559309 CCDC180Q9P1Z9 1646 aa31.44■■■□□ 2.62
SNRPA1-207ENST00000559309 ABCC9O60706 1549 aa30.16■■■□□ 2.42
SNRPA1-207ENST00000559309 ZCCHC6Q5VYS8 1495 aaKnown RBP29.74■■■□□ 2.35
SNRPA1-207ENST00000559309 DCAF1Q9Y4B6 1507 aa29.54■■■□□ 2.32
SNRPA1-207ENST00000559309 MYO15BQ96JP2 1530 aa29.5■■■□□ 2.31
SNRPA1-207ENST00000559309 NACADO15069 1562 aa29.4■■■□□ 2.3
SNRPA1-207ENST00000559309 RB1CC1Q8TDY2 1594 aa29.26■■■□□ 2.28
SNRPA1-207ENST00000559309 DCAF8L2P0C7V8 631 aa29.11■■■□□ 2.25
SNRPA1-207ENST00000559309 UNC13AQ9UPW8 1703 aa28.7■■■□□ 2.19
SNRPA1-207ENST00000559309 SCRIBQ14160 1630 aa28.57■■■□□ 2.16
SNRPA1-207ENST00000559309 DNAJC5BQ9UF47 199 aa28.55■■■□□ 2.16
SNRPA1-207ENST00000559309 BICRAQ9NZM4 1560 aa28.48■■■□□ 2.15
SNRPA1-207ENST00000559309 SHROOM4Q9ULL8 1493 aa28.24■■■□□ 2.11
SNRPA1-207ENST00000559309 PABPN1Q86U42 306 aaKnown RBP eCLIP28.15■■■□□ 2.1
SNRPA1-207ENST00000559309 EIF4G1Q04637 1599 aaKnown RBP27.6■■■□□ 2.01
SNRPA1-207ENST00000559309 CECR2Q9BXF3 1484 aa27.59■■■□□ 2.01
SNRPA1-207ENST00000559309 BAZ1AQ9NRL2 1556 aaPredicted RBP27.48■■□□□ 1.99
SNRPA1-207ENST00000559309 SMARCA4P51532 1647 aa27.47■■□□□ 1.99
SNRPA1-207ENST00000559309 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
SNRPA1-207ENST00000559309 CC2D2AQ9P2K1 1620 aa27.34■■□□□ 1.97
SNRPA1-207ENST00000559309 PEG3Q9GZU2 1588 aa27.31■■□□□ 1.96
SNRPA1-207ENST00000559309 RSF1Q96T23 1441 aaPredicted RBP27.24■■□□□ 1.95
SNRPA1-207ENST00000559309 ATAD2BQ9ULI0 1458 aa27.19■■□□□ 1.94
SNRPA1-207ENST00000559309 SMARCA2P51531 1590 aa27.17■■□□□ 1.94
SNRPA1-207ENST00000559309 NCAPD3P42695 1498 aa27.14■■□□□ 1.94
SNRPA1-207ENST00000559309 WIZO95785 1651 aa27.08■■□□□ 1.93
SNRPA1-207ENST00000559309 HMGXB3Q12766 1538 aa27.06■■□□□ 1.92
SNRPA1-207ENST00000559309 BAZ1BQ9UIG0 1483 aaKnown RBP26.92■■□□□ 1.9
SNRPA1-207ENST00000559309 TOP2AP11388 1531 aaKnown RBP26.85■■□□□ 1.89
SNRPA1-207ENST00000559309 SUPT5HO00267 1087 aaKnown RBP26.63■■□□□ 1.85
SNRPA1-207ENST00000559309 CCDC88BA6NC98 1476 aa26.51■■□□□ 1.83
SNRPA1-207ENST00000559309 DNAJC5Q9H3Z4 198 aa26.38■■□□□ 1.81
SNRPA1-207ENST00000559309 LAMC3Q9Y6N6 1575 aa26.32■■□□□ 1.8
SNRPA1-207ENST00000559309 CFTRP13569 1480 aa26.31■■□□□ 1.8
SNRPA1-207ENST00000559309 CADPSQ9ULU8 1353 aa26.3■■□□□ 1.8
SNRPA1-207ENST00000559309 NESP48681 1621 aa26.25■■□□□ 1.79
SNRPA1-207ENST00000559309 PRDM2Q13029 1718 aa26.17■■□□□ 1.78
SNRPA1-207ENST00000559309 CUX2O14529 1486 aa26.15■■□□□ 1.78
SNRPA1-207ENST00000559309 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
SNRPA1-207ENST00000559309 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
SNRPA1-207ENST00000559309 KIF21AQ7Z4S6 1674 aa26■■□□□ 1.75
SNRPA1-207ENST00000559309 FANCD2Q9BXW9 1451 aa25.98■■□□□ 1.75
SNRPA1-207ENST00000559309 CEP164Q9UPV0 1460 aa25.88■■□□□ 1.73
SNRPA1-207ENST00000559309 THOC2Q8NI27 1593 aaKnown RBP25.85■■□□□ 1.73
SNRPA1-207ENST00000559309 MRC2Q9UBG0 1479 aa25.78■■□□□ 1.72
SNRPA1-207ENST00000559309 WDR62O43379 1518 aa25.75■■□□□ 1.71
SNRPA1-207ENST00000559309 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
SNRPA1-207ENST00000559309 DNMBPQ6XZF7 1577 aa25.68■■□□□ 1.7
SNRPA1-207ENST00000559309 ABCC8Q09428 1581 aa25.67■■□□□ 1.7
SNRPA1-207ENST00000559309 CUX1P39880 1505 aa25.65■■□□□ 1.7
SNRPA1-207ENST00000559309 TOPBP1Q92547 1522 aa25.65■■□□□ 1.7
SNRPA1-207ENST00000559309 BIVM-ERCC5R4GMW8 1640 aa25.61■■□□□ 1.69
SNRPA1-207ENST00000559309 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
SNRPA1-207ENST00000559309 TOP2BQ02880 1626 aa25.59■■□□□ 1.69
SNRPA1-207ENST00000559309 SYNJ1O43426 1573 aa25.58■■□□□ 1.69
SNRPA1-207ENST00000559309 POLA1P09884 1462 aaPredicted RBP25.47■■□□□ 1.67
SNRPA1-207ENST00000559309 FGD5Q6ZNL6 1462 aa25.45■■□□□ 1.66
SNRPA1-207ENST00000559309 TARBP1Q13395 1621 aaKnown RBP25.41■■□□□ 1.66
SNRPA1-207ENST00000559309 IFT140Q96RY7 1462 aa25.35■■□□□ 1.65
SNRPA1-207ENST00000559309 WDR97A6NE52 1622 aa25.34■■□□□ 1.65
SNRPA1-207ENST00000559309 SOGA1O94964 1423 aa25.3■■□□□ 1.64
SNRPA1-207ENST00000559309 RAD54L2Q9Y4B4 1467 aa25.3■■□□□ 1.64
SNRPA1-207ENST00000559309 CHIC1Q5VXU3 224 aa25.3■■□□□ 1.64
SNRPA1-207ENST00000559309 ABCA10Q8WWZ4 1543 aa25.28■■□□□ 1.64
SNRPA1-207ENST00000559309 ZNF608Q9ULD9 1512 aaPredicted RBP25.19■■□□□ 1.62
SNRPA1-207ENST00000559309 TRIM41Q8WV44 630 aa25.18■■□□□ 1.62
SNRPA1-207ENST00000559309 ABCA5Q8WWZ7 1642 aa25.17■■□□□ 1.62
SNRPA1-207ENST00000559309 EIF4G3O43432 1585 aaKnown RBP25.14■■□□□ 1.62
SNRPA1-207ENST00000559309 TDRD9Q8NDG6 1382 aaKnown RBP25.07■■□□□ 1.6
SNRPA1-207ENST00000559309 AQRO60306 1485 aaKnown RBP eCLIP25.07■■□□□ 1.68e-7■■□□□ 14.1
SNRPA1-207ENST00000559309 GAPVD1Q14C86 1478 aa25.04■■□□□ 1.6
SNRPA1-207ENST00000559309 KIF27Q86VH2 1401 aa25.01■■□□□ 1.59
SNRPA1-207ENST00000559309 PBRM1Q86U86 1689 aa25.01■■□□□ 1.59
SNRPA1-207ENST00000559309 GRIN2BQ13224 1484 aa24.99■■□□□ 1.59
SNRPA1-207ENST00000559309 ERICH3Q5RHP9 1530 aa24.99■■□□□ 1.59
SNRPA1-207ENST00000559309 RUSC2Q8N2Y8 1516 aa24.97■■□□□ 1.59
SNRPA1-207ENST00000559309 OSCARQ8IYS5 282 aa24.92■■□□□ 1.58
SNRPA1-207ENST00000559309 IGF1RP08069 1367 aa24.92■■□□□ 1.58
SNRPA1-207ENST00000559309 MAGI1Q96QZ7 1491 aaPredicted RBP24.9■■□□□ 1.58
SNRPA1-207ENST00000559309 EEA1Q15075 1411 aa24.9■■□□□ 1.58
SNRPA1-207ENST00000559309 SNAPC4Q5SXM2 1469 aa24.86■■□□□ 1.57
SNRPA1-207ENST00000559309 ADAMTS12P58397 1594 aa24.85■■□□□ 1.57
SNRPA1-207ENST00000559309 CUL7Q14999 1698 aa24.84■■□□□ 1.57
SNRPA1-207ENST00000559309 FHAD1B1AJZ9 1412 aa24.79■■□□□ 1.56
SNRPA1-207ENST00000559309 SYNJ2O15056 1496 aa24.79■■□□□ 1.56
SNRPA1-207ENST00000559309 PRXQ9BXM0 1461 aa24.77■■□□□ 1.56
SNRPA1-207ENST00000559309 CHD1O14646 1710 aa24.72■■□□□ 1.55
SNRPA1-207ENST00000559309 CARMIL1Q5VZK9 1371 aa24.71■■□□□ 1.55
SNRPA1-207ENST00000559309 CSRNP3Q8WYN3 585 aa24.71■■□□□ 1.55
SNRPA1-207ENST00000559309 GRIN2AQ12879 1464 aa24.69■■□□□ 1.54
SNRPA1-207ENST00000559309 KIF21BO75037 1637 aa24.65■■□□□ 1.54
SNRPA1-207ENST00000559309 RAPGEF2Q9Y4G8 1499 aa24.64■■□□□ 1.54
SNRPA1-207ENST00000559309 NUP160Q12769 1436 aa24.61■■□□□ 1.53
SNRPA1-207ENST00000559309 CHMP7Q8WUX9 453 aaPredicted RBP24.58■■□□□ 1.53
SNRPA1-207ENST00000559309 CEP170Q5SW79 1584 aa24.57■■□□□ 1.52
SNRPA1-207ENST00000559309 FAM9AQ8IZU1 332 aaPredicted RBP24.55■■□□□ 1.52
SNRPA1-207ENST00000559309 CLASP1Q7Z460 1538 aa24.54■■□□□ 1.52
SNRPA1-207ENST00000559309 RIMBP3CA6NJZ7 1639 aa24.53■■□□□ 1.52
SNRPA1-207ENST00000559309 RIMBP3BA6NNM3 1639 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms