RNA–Protein interactions for RNA: ENST00000559002.5

CHRNA3-204, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 1 (best)

Gene CHRNA3, Length 333 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-204ENST00000559002 NISCHQ9Y2I1 1504 aa15.53■□□□□ 0.08
CHRNA3-204ENST00000559002 CCDC180Q9P1Z9 1646 aa13.69□□□□□ -0.22
CHRNA3-204ENST00000559002 ABCC9O60706 1549 aa13.23□□□□□ -0.29
CHRNA3-204ENST00000559002 ZCCHC6Q5VYS8 1495 aaKnown RBP12.98□□□□□ -0.33
CHRNA3-204ENST00000559002 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
CHRNA3-204ENST00000559002 DCAF1Q9Y4B6 1507 aa12.85□□□□□ -0.35
CHRNA3-204ENST00000559002 NACADO15069 1562 aa12.83□□□□□ -0.36
CHRNA3-204ENST00000559002 MYO15BQ96JP2 1530 aa12.82□□□□□ -0.36
CHRNA3-204ENST00000559002 RB1CC1Q8TDY2 1594 aa12.81□□□□□ -0.36
CHRNA3-204ENST00000559002 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
CHRNA3-204ENST00000559002 UNC13AQ9UPW8 1703 aa12.44□□□□□ -0.42
CHRNA3-204ENST00000559002 SHROOM4Q9ULL8 1493 aa12.44□□□□□ -0.42
CHRNA3-204ENST00000559002 PABPN1Q86U42 306 aaKnown RBP eCLIP12.4□□□□□ -0.42
CHRNA3-204ENST00000559002 BICRAQ9NZM4 1560 aa12.37□□□□□ -0.43
CHRNA3-204ENST00000559002 CECR2Q9BXF3 1484 aa12.07□□□□□ -0.48
CHRNA3-204ENST00000559002 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
CHRNA3-204ENST00000559002 BAZ1AQ9NRL2 1556 aaPredicted RBP12.03□□□□□ -0.48
CHRNA3-204ENST00000559002 SMARCA4P51532 1647 aa12□□□□□ -0.49
CHRNA3-204ENST00000559002 MROH2BQ7Z745 1585 aa11.96□□□□□ -0.49
CHRNA3-204ENST00000559002 CC2D2AQ9P2K1 1620 aa11.94□□□□□ -0.5
CHRNA3-204ENST00000559002 RSF1Q96T23 1441 aaPredicted RBP11.92□□□□□ -0.5
CHRNA3-204ENST00000559002 SMARCA2P51531 1590 aa11.89□□□□□ -0.51
CHRNA3-204ENST00000559002 DNAJC5BQ9UF47 199 aa11.89□□□□□ -0.51
CHRNA3-204ENST00000559002 ATAD2BQ9ULI0 1458 aa11.89□□□□□ -0.51
CHRNA3-204ENST00000559002 PEG3Q9GZU2 1588 aa11.87□□□□□ -0.51
CHRNA3-204ENST00000559002 NCAPD3P42695 1498 aa11.83□□□□□ -0.52
CHRNA3-204ENST00000559002 WIZO95785 1651 aa11.83□□□□□ -0.52
CHRNA3-204ENST00000559002 BAZ1BQ9UIG0 1483 aaKnown RBP11.83□□□□□ -0.52
CHRNA3-204ENST00000559002 SUPT5HO00267 1087 aaKnown RBP11.82□□□□□ -0.52
CHRNA3-204ENST00000559002 HMGXB3Q12766 1538 aa11.81□□□□□ -0.52
CHRNA3-204ENST00000559002 TOP2AP11388 1531 aaKnown RBP11.76□□□□□ -0.53
CHRNA3-204ENST00000559002 CCDC88BA6NC98 1476 aa11.6□□□□□ -0.55
CHRNA3-204ENST00000559002 CADPSQ9ULU8 1353 aa11.52□□□□□ -0.57
CHRNA3-204ENST00000559002 LAMC3Q9Y6N6 1575 aa11.5□□□□□ -0.57
CHRNA3-204ENST00000559002 CFTRP13569 1480 aa11.49□□□□□ -0.57
CHRNA3-204ENST00000559002 NESP48681 1621 aa11.49□□□□□ -0.57
CHRNA3-204ENST00000559002 PDS5BQ9NTI5 1447 aa11.43□□□□□ -0.58
CHRNA3-204ENST00000559002 ERCC6Q03468 1493 aa11.41□□□□□ -0.58
CHRNA3-204ENST00000559002 FANCD2Q9BXW9 1451 aa11.39□□□□□ -0.59
CHRNA3-204ENST00000559002 PRDM2Q13029 1718 aa11.38□□□□□ -0.59
CHRNA3-204ENST00000559002 CEP164Q9UPV0 1460 aa11.37□□□□□ -0.59
CHRNA3-204ENST00000559002 KIF21AQ7Z4S6 1674 aa11.34□□□□□ -0.59
CHRNA3-204ENST00000559002 MRC2Q9UBG0 1479 aa11.31□□□□□ -0.6
CHRNA3-204ENST00000559002 THOC2Q8NI27 1593 aaKnown RBP11.26□□□□□ -0.61
CHRNA3-204ENST00000559002 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
CHRNA3-204ENST00000559002 ABCC8Q09428 1581 aa11.25□□□□□ -0.61
CHRNA3-204ENST00000559002 URB2Q14146 1524 aaKnown RBP11.25□□□□□ -0.61
CHRNA3-204ENST00000559002 WDR62O43379 1518 aa11.24□□□□□ -0.61
CHRNA3-204ENST00000559002 DNMBPQ6XZF7 1577 aa11.24□□□□□ -0.61
CHRNA3-204ENST00000559002 TOPBP1Q92547 1522 aa11.22□□□□□ -0.61
CHRNA3-204ENST00000559002 CUX1P39880 1505 aa11.21□□□□□ -0.61
CHRNA3-204ENST00000559002 SYNJ1O43426 1573 aa11.19□□□□□ -0.62
CHRNA3-204ENST00000559002 CUX2O14529 1486 aa11.19□□□□□ -0.62
CHRNA3-204ENST00000559002 TOP2BQ02880 1626 aa11.18□□□□□ -0.62
CHRNA3-204ENST00000559002 BIVM-ERCC5R4GMW8 1640 aa11.17□□□□□ -0.62
CHRNA3-204ENST00000559002 TRIM41Q8WV44 630 aa11.16□□□□□ -0.62
CHRNA3-204ENST00000559002 FGD5Q6ZNL6 1462 aa11.16□□□□□ -0.62
CHRNA3-204ENST00000559002 POLA1P09884 1462 aaPredicted RBP11.15□□□□□ -0.62
CHRNA3-204ENST00000559002 CHIC1Q5VXU3 224 aa11.13□□□□□ -0.63
CHRNA3-204ENST00000559002 IFT140Q96RY7 1462 aa11.12□□□□□ -0.63
CHRNA3-204ENST00000559002 SOGA1O94964 1423 aa11.11□□□□□ -0.63
CHRNA3-204ENST00000559002 RAD54L2Q9Y4B4 1467 aa11.1□□□□□ -0.63
CHRNA3-204ENST00000559002 TARBP1Q13395 1621 aaKnown RBP11.06□□□□□ -0.64
CHRNA3-204ENST00000559002 ABCA10Q8WWZ4 1543 aa11.06□□□□□ -0.64
CHRNA3-204ENST00000559002 ZNF608Q9ULD9 1512 aaPredicted RBP11.03□□□□□ -0.64
CHRNA3-204ENST00000559002 TDRD9Q8NDG6 1382 aaKnown RBP11.03□□□□□ -0.64
CHRNA3-204ENST00000559002 WDR97A6NE52 1622 aa11.02□□□□□ -0.65
CHRNA3-204ENST00000559002 KIF27Q86VH2 1401 aa11.01□□□□□ -0.65
CHRNA3-204ENST00000559002 AQRO60306 1485 aaKnown RBP eCLIP11□□□□□ -0.65
CHRNA3-204ENST00000559002 EIF4G3O43432 1585 aaKnown RBP11□□□□□ -0.65
CHRNA3-204ENST00000559002 GAPVD1Q14C86 1478 aa11□□□□□ -0.65
CHRNA3-204ENST00000559002 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
CHRNA3-204ENST00000559002 GRIN2BQ13224 1484 aa10.96□□□□□ -0.65
CHRNA3-204ENST00000559002 EEA1Q15075 1411 aa10.94□□□□□ -0.66
CHRNA3-204ENST00000559002 RUSC2Q8N2Y8 1516 aa10.94□□□□□ -0.66
CHRNA3-204ENST00000559002 FAM9AQ8IZU1 332 aaPredicted RBP10.93□□□□□ -0.66
CHRNA3-204ENST00000559002 ERICH3Q5RHP9 1530 aa10.93□□□□□ -0.66
CHRNA3-204ENST00000559002 PBRM1Q86U86 1689 aa10.92□□□□□ -0.66
CHRNA3-204ENST00000559002 SNAPC4Q5SXM2 1469 aa10.92□□□□□ -0.66
CHRNA3-204ENST00000559002 MAGI1Q96QZ7 1491 aaPredicted RBP10.91□□□□□ -0.66
CHRNA3-204ENST00000559002 IGF1RP08069 1367 aa10.9□□□□□ -0.66
CHRNA3-204ENST00000559002 CSRNP3Q8WYN3 585 aa10.89□□□□□ -0.67
CHRNA3-204ENST00000559002 FHAD1B1AJZ9 1412 aa10.88□□□□□ -0.67
CHRNA3-204ENST00000559002 ADAMTS12P58397 1594 aa10.88□□□□□ -0.67
CHRNA3-204ENST00000559002 FBLN2P98095 1184 aa10.87□□□□□ -0.67
CHRNA3-204ENST00000559002 CUL7Q14999 1698 aa10.87□□□□□ -0.67
CHRNA3-204ENST00000559002 CARMIL1Q5VZK9 1371 aa10.87□□□□□ -0.67
CHRNA3-204ENST00000559002 SYNJ2O15056 1496 aa10.87□□□□□ -0.67
CHRNA3-204ENST00000559002 CHMP7Q8WUX9 453 aaPredicted RBP10.86□□□□□ -0.67
CHRNA3-204ENST00000559002 GRIN2AQ12879 1464 aa10.82□□□□□ -0.68
CHRNA3-204ENST00000559002 PRXQ9BXM0 1461 aa10.82□□□□□ -0.68
CHRNA3-204ENST00000559002 RAPGEF2Q9Y4G8 1499 aa10.82□□□□□ -0.68
CHRNA3-204ENST00000559002 CHD1O14646 1710 aa10.79□□□□□ -0.68
CHRNA3-204ENST00000559002 KIF21BO75037 1637 aa10.79□□□□□ -0.68
CHRNA3-204ENST00000559002 EHMT2Q96KQ7 1210 aa10.78□□□□□ -0.68
CHRNA3-204ENST00000559002 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
CHRNA3-204ENST00000559002 OSCARQ8IYS5 282 aa10.76□□□□□ -0.69
CHRNA3-204ENST00000559002 NUP160Q12769 1436 aa10.75□□□□□ -0.69
CHRNA3-204ENST00000559002 CEP170Q5SW79 1584 aa10.74□□□□□ -0.69
CHRNA3-204ENST00000559002 UBTFP17480 764 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms