RNA–Protein interactions for RNA: ENST00000558321.5

CDC42BPB-202, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 528 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-202ENST00000558321 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
CDC42BPB-202ENST00000558321 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
CDC42BPB-202ENST00000558321 ABCC9O60706 1549 aa26.85■■□□□ 1.89
CDC42BPB-202ENST00000558321 DCAF8L2P0C7V8 631 aa25.68■■□□□ 1.7
CDC42BPB-202ENST00000558321 RB1CC1Q8TDY2 1594 aa25.63■■□□□ 1.69
CDC42BPB-202ENST00000558321 NACADO15069 1562 aa25.52■■□□□ 1.68
CDC42BPB-202ENST00000558321 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
CDC42BPB-202ENST00000558321 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.61
CDC42BPB-202ENST00000558321 PABPN1Q86U42 306 aaKnown RBP eCLIP25.11■■□□□ 1.61
CDC42BPB-202ENST00000558321 DCAF1Q9Y4B6 1507 aa25■■□□□ 1.59
CDC42BPB-202ENST00000558321 DNAJC5BQ9UF47 199 aa24.95■■□□□ 1.58
CDC42BPB-202ENST00000558321 UNC13AQ9UPW8 1703 aa24.94■■□□□ 1.58
CDC42BPB-202ENST00000558321 BICRAQ9NZM4 1560 aa24.81■■□□□ 1.56
CDC42BPB-202ENST00000558321 SCRIBQ14160 1630 aa24.69■■□□□ 1.54
CDC42BPB-202ENST00000558321 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
CDC42BPB-202ENST00000558321 EIF4G1Q04637 1599 aaKnown RBP24.21■■□□□ 1.47
CDC42BPB-202ENST00000558321 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
CDC42BPB-202ENST00000558321 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
CDC42BPB-202ENST00000558321 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
CDC42BPB-202ENST00000558321 SMARCA4P51532 1647 aa23.55■■□□□ 1.36
CDC42BPB-202ENST00000558321 ATAD2BQ9ULI0 1458 aa23.54■■□□□ 1.36
CDC42BPB-202ENST00000558321 BAZ1AQ9NRL2 1556 aaPredicted RBP23.5■■□□□ 1.35
CDC42BPB-202ENST00000558321 SMARCA2P51531 1590 aa23.48■■□□□ 1.35
CDC42BPB-202ENST00000558321 HMGXB3Q12766 1538 aa23.37■■□□□ 1.33
CDC42BPB-202ENST00000558321 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
CDC42BPB-202ENST00000558321 BAZ1BQ9UIG0 1483 aaKnown RBP23.35■■□□□ 1.33
CDC42BPB-202ENST00000558321 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.32
CDC42BPB-202ENST00000558321 ERCC6Q03468 1493 aa23.19■■□□□ 1.3
CDC42BPB-202ENST00000558321 NESP48681 1621 aa23.11■■□□□ 1.29
CDC42BPB-202ENST00000558321 WIZO95785 1651 aa23.07■■□□□ 1.28
CDC42BPB-202ENST00000558321 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
CDC42BPB-202ENST00000558321 CUX2O14529 1486 aa22.98■■□□□ 1.27
CDC42BPB-202ENST00000558321 LAMC3Q9Y6N6 1575 aa22.97■■□□□ 1.27
CDC42BPB-202ENST00000558321 PDS5BQ9NTI5 1447 aa22.91■■□□□ 1.26
CDC42BPB-202ENST00000558321 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
CDC42BPB-202ENST00000558321 TOP2AP11388 1531 aaKnown RBP22.8■■□□□ 1.24
CDC42BPB-202ENST00000558321 KIF21AQ7Z4S6 1674 aa22.76■■□□□ 1.23
CDC42BPB-202ENST00000558321 THOC2Q8NI27 1593 aaKnown RBP22.74■■□□□ 1.23
CDC42BPB-202ENST00000558321 DNAJC5Q9H3Z4 198 aa22.73■■□□□ 1.23
CDC42BPB-202ENST00000558321 CFTRP13569 1480 aa22.66■■□□□ 1.22
CDC42BPB-202ENST00000558321 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
CDC42BPB-202ENST00000558321 FANCD2Q9BXW9 1451 aa22.63■■□□□ 1.21
CDC42BPB-202ENST00000558321 CEP164Q9UPV0 1460 aa22.62■■□□□ 1.21
CDC42BPB-202ENST00000558321 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
CDC42BPB-202ENST00000558321 WDR62O43379 1518 aa22.52■■□□□ 1.2
CDC42BPB-202ENST00000558321 URB2Q14146 1524 aaKnown RBP22.39■■□□□ 1.17
CDC42BPB-202ENST00000558321 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
CDC42BPB-202ENST00000558321 PRDM2Q13029 1718 aa22.34■■□□□ 1.17
CDC42BPB-202ENST00000558321 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
CDC42BPB-202ENST00000558321 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
CDC42BPB-202ENST00000558321 IFT140Q96RY7 1462 aa22.16■■□□□ 1.14
CDC42BPB-202ENST00000558321 DNMBPQ6XZF7 1577 aa22.13■■□□□ 1.13
CDC42BPB-202ENST00000558321 OSCARQ8IYS5 282 aa22.1■■□□□ 1.13
CDC42BPB-202ENST00000558321 ZNF608Q9ULD9 1512 aaPredicted RBP22.09■■□□□ 1.13
CDC42BPB-202ENST00000558321 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
CDC42BPB-202ENST00000558321 SOGA1O94964 1423 aa21.98■■□□□ 1.11
CDC42BPB-202ENST00000558321 AQRO60306 1485 aaKnown RBP eCLIP21.96■■□□□ 1.113e-6■■■■□ 24.7
CDC42BPB-202ENST00000558321 RAD54L2Q9Y4B4 1467 aa21.95■■□□□ 1.1
CDC42BPB-202ENST00000558321 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
CDC42BPB-202ENST00000558321 EIF4G3O43432 1585 aaKnown RBP21.93■■□□□ 1.1
CDC42BPB-202ENST00000558321 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
CDC42BPB-202ENST00000558321 CUX1P39880 1505 aa21.91■■□□□ 1.1
CDC42BPB-202ENST00000558321 FGD5Q6ZNL6 1462 aa21.91■■□□□ 1.1
CDC42BPB-202ENST00000558321 TDRD9Q8NDG6 1382 aaKnown RBP21.9■■□□□ 1.1
CDC42BPB-202ENST00000558321 FBLN2P98095 1184 aa21.88■■□□□ 1.09
CDC42BPB-202ENST00000558321 CHMP7Q8WUX9 453 aaPredicted RBP21.74■■□□□ 1.07
CDC42BPB-202ENST00000558321 WDR97A6NE52 1622 aa21.73■■□□□ 1.07
CDC42BPB-202ENST00000558321 GRIN2BQ13224 1484 aa21.72■■□□□ 1.07
CDC42BPB-202ENST00000558321 SNAPC4Q5SXM2 1469 aa21.72■■□□□ 1.07
CDC42BPB-202ENST00000558321 WRNQ14191 1432 aaPredicted RBP eCLIP21.71■■□□□ 1.07
CDC42BPB-202ENST00000558321 CHD1O14646 1710 aa21.7■■□□□ 1.06
CDC42BPB-202ENST00000558321 GAPVD1Q14C86 1478 aa21.68■■□□□ 1.06
CDC42BPB-202ENST00000558321 ABCA10Q8WWZ4 1543 aa21.66■■□□□ 1.06
CDC42BPB-202ENST00000558321 MAGI1Q96QZ7 1491 aaPredicted RBP21.66■■□□□ 1.06
CDC42BPB-202ENST00000558321 RIMBP3CA6NJZ7 1639 aa21.65■■□□□ 1.06
CDC42BPB-202ENST00000558321 RIMBP3BA6NNM3 1639 aa21.65■■□□□ 1.06
CDC42BPB-202ENST00000558321 RIMBP3Q9UFD9 1639 aa21.65■■□□□ 1.06
CDC42BPB-202ENST00000558321 TOP2BQ02880 1626 aa21.62■■□□□ 1.05
CDC42BPB-202ENST00000558321 ARHGEF11O15085 1522 aa21.62■■□□□ 1.05
CDC42BPB-202ENST00000558321 SYNJ1O43426 1573 aa21.61■■□□□ 1.05
CDC42BPB-202ENST00000558321 BIVM-ERCC5R4GMW8 1640 aa21.6■■□□□ 1.05
CDC42BPB-202ENST00000558321 SYNJ2O15056 1496 aa21.59■■□□□ 1.05
CDC42BPB-202ENST00000558321 CYB5RLQ6IPT4 315 aa21.59■■□□□ 1.05
CDC42BPB-202ENST00000558321 ABCA5Q8WWZ7 1642 aa21.56■■□□□ 1.04
CDC42BPB-202ENST00000558321 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
CDC42BPB-202ENST00000558321 CLASP1Q7Z460 1538 aa21.46■■□□□ 1.03
CDC42BPB-202ENST00000558321 ARAP1Q96P48 1450 aa21.43■■□□□ 1.02
CDC42BPB-202ENST00000558321 FHAD1B1AJZ9 1412 aa21.42■■□□□ 1.02
CDC42BPB-202ENST00000558321 GRIN2AQ12879 1464 aa21.41■■□□□ 1.02
CDC42BPB-202ENST00000558321 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.02
CDC42BPB-202ENST00000558321 ADAMTS12P58397 1594 aa21.39■■□□□ 1.01
CDC42BPB-202ENST00000558321 NUP160Q12769 1436 aa21.31■■□□□ 1
CDC42BPB-202ENST00000558321 KIF27Q86VH2 1401 aa21.3■■□□□ 1
CDC42BPB-202ENST00000558321 TRHP20396 242 aaPredicted RBP21.3■■□□□ 1
CDC42BPB-202ENST00000558321 CEP170Q5SW79 1584 aa21.29■■□□□ 1
CDC42BPB-202ENST00000558321 IGF1RP08069 1367 aa21.25■□□□□ 0.99
CDC42BPB-202ENST00000558321 JPH4Q96JJ6 628 aa21.21■□□□□ 0.99
CDC42BPB-202ENST00000558321 ERCC6L2Q5T890 1561 aa21.18■□□□□ 0.98
CDC42BPB-202ENST00000558321 PRG4Q92954 1404 aaPredicted RBP21.15■□□□□ 0.98
CDC42BPB-202ENST00000558321 CARMIL1Q5VZK9 1371 aa21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms