RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 AEBP2Q6ZN18 517 aaPredicted RBP15.01□□□□□ -0.01
SPG11-208ENST00000558155 CHIC1Q5VXU3 224 aa13.9□□□□□ -0.18
SPG11-208ENST00000558155 NISCHQ9Y2I1 1504 aa13.11□□□□□ -0.31
SPG11-208ENST00000558155 SENP3Q9H4L4 574 aaPredicted RBP12.7□□□□□ -0.38
SPG11-208ENST00000558155 PHF23Q9BUL5 403 aaPredicted RBP12.55□□□□□ -0.4
SPG11-208ENST00000558155 ABCC9O60706 1549 aa12.09□□□□□ -0.47
SPG11-208ENST00000558155 FOXD1Q16676 465 aa11.96□□□□□ -0.49
SPG11-208ENST00000558155 CCDC180Q9P1Z9 1646 aa11.83□□□□□ -0.52
SPG11-208ENST00000558155 DNAJC5BQ9UF47 199 aa11.57□□□□□ -0.56
SPG11-208ENST00000558155 POTEDQ86YR6 584 aa11.47□□□□□ -0.57
SPG11-208ENST00000558155 RB1CC1Q8TDY2 1594 aa11.41□□□□□ -0.58
SPG11-208ENST00000558155 DCAF8L2P0C7V8 631 aa11.3□□□□□ -0.6
SPG11-208ENST00000558155 NACADO15069 1562 aa11.28□□□□□ -0.6
SPG11-208ENST00000558155 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
SPG11-208ENST00000558155 MSH5O43196 834 aa11.18□□□□□ -0.62
SPG11-208ENST00000558155 UNC13AQ9UPW8 1703 aa11.09□□□□□ -0.63
SPG11-208ENST00000558155 PIAS4Q8N2W9 510 aaPredicted RBP11.04□□□□□ -0.64
SPG11-208ENST00000558155 MYO15BQ96JP2 1530 aa11.04□□□□□ -0.64
SPG11-208ENST00000558155 BICRAQ9NZM4 1560 aa11.03□□□□□ -0.64
SPG11-208ENST00000558155 PPP6R1Q9UPN7 881 aa11.03□□□□□ -0.64
SPG11-208ENST00000558155 ADRA2BP18089 450 aa10.94□□□□□ -0.66
SPG11-208ENST00000558155 CECR2Q9BXF3 1484 aa10.93□□□□□ -0.66
SPG11-208ENST00000558155 PLPPR3Q6T4P5 718 aa10.92□□□□□ -0.66
SPG11-208ENST00000558155 SHROOM4Q9ULL8 1493 aa10.89□□□□□ -0.67
SPG11-208ENST00000558155 CC2D2AQ9P2K1 1620 aa10.89□□□□□ -0.67
SPG11-208ENST00000558155 DNAJC5Q9H3Z4 198 aa10.84□□□□□ -0.67
SPG11-208ENST00000558155 DCAF1Q9Y4B6 1507 aa10.81□□□□□ -0.68
SPG11-208ENST00000558155 EIF4G1Q04637 1599 aaKnown RBP10.8□□□□□ -0.68
SPG11-208ENST00000558155 ZCCHC6Q5VYS8 1495 aaKnown RBP10.78□□□□□ -0.68
SPG11-208ENST00000558155 SCRIBQ14160 1630 aa10.76□□□□□ -0.69
SPG11-208ENST00000558155 CUX2O14529 1486 aa10.52□□□□□ -0.73
SPG11-208ENST00000558155 ERCC6Q03468 1493 aa10.48□□□□□ -0.73
SPG11-208ENST00000558155 NCAPD3P42695 1498 aa10.43□□□□□ -0.74
SPG11-208ENST00000558155 ATAD2BQ9ULI0 1458 aa10.35□□□□□ -0.75
SPG11-208ENST00000558155 SMARCA2P51531 1590 aa10.31□□□□□ -0.76
SPG11-208ENST00000558155 NESP48681 1621 aa10.3□□□□□ -0.76
SPG11-208ENST00000558155 HMGXB3Q12766 1538 aa10.28□□□□□ -0.76
SPG11-208ENST00000558155 TRIM41Q8WV44 630 aa10.27□□□□□ -0.77
SPG11-208ENST00000558155 SMARCA4P51532 1647 aa10.25□□□□□ -0.77
SPG11-208ENST00000558155 BAZ1BQ9UIG0 1483 aaKnown RBP10.23□□□□□ -0.77
SPG11-208ENST00000558155 PDS5BQ9NTI5 1447 aa10.21□□□□□ -0.78
SPG11-208ENST00000558155 LAMC3Q9Y6N6 1575 aa10.21□□□□□ -0.78
SPG11-208ENST00000558155 THOC2Q8NI27 1593 aaKnown RBP10.2□□□□□ -0.78
SPG11-208ENST00000558155 BAZ1AQ9NRL2 1556 aaPredicted RBP10.19□□□□□ -0.78
SPG11-208ENST00000558155 MAPK8IP2Q13387 824 aaPredicted RBP10.16□□□□□ -0.78
SPG11-208ENST00000558155 PEG3Q9GZU2 1588 aa10.15□□□□□ -0.78
SPG11-208ENST00000558155 KIF21AQ7Z4S6 1674 aa10.14□□□□□ -0.79
SPG11-208ENST00000558155 CADPSQ9ULU8 1353 aa10.12□□□□□ -0.79
SPG11-208ENST00000558155 OSCARQ8IYS5 282 aa10.1□□□□□ -0.79
SPG11-208ENST00000558155 MRC2Q9UBG0 1479 aa10.09□□□□□ -0.79
SPG11-208ENST00000558155 MROH2BQ7Z745 1585 aa10.08□□□□□ -0.8
SPG11-208ENST00000558155 DMRT2Q9Y5R5 561 aa10.07□□□□□ -0.8
SPG11-208ENST00000558155 WDR62O43379 1518 aa10.04□□□□□ -0.8
SPG11-208ENST00000558155 CEP164Q9UPV0 1460 aa10□□□□□ -0.81
SPG11-208ENST00000558155 FANCD2Q9BXW9 1451 aa9.98□□□□□ -0.81
SPG11-208ENST00000558155 WIZO95785 1651 aa9.95□□□□□ -0.82
SPG11-208ENST00000558155 CFTRP13569 1480 aa9.92□□□□□ -0.82
SPG11-208ENST00000558155 URB2Q14146 1524 aaKnown RBP9.87□□□□□ -0.83
SPG11-208ENST00000558155 RIMBP3CA6NJZ7 1639 aa9.87□□□□□ -0.83
SPG11-208ENST00000558155 RIMBP3BA6NNM3 1639 aa9.87□□□□□ -0.83
SPG11-208ENST00000558155 RIMBP3Q9UFD9 1639 aa9.87□□□□□ -0.83
SPG11-208ENST00000558155 CYB5RLQ6IPT4 315 aa9.87□□□□□ -0.83
SPG11-208ENST00000558155 SCAF1Q9H7N4 1312 aaKnown RBP9.84□□□□□ -0.83
SPG11-208ENST00000558155 TRHP20396 242 aaPredicted RBP9.84□□□□□ -0.83
SPG11-208ENST00000558155 IFT140Q96RY7 1462 aa9.83□□□□□ -0.84
SPG11-208ENST00000558155 ARHGEF11O15085 1522 aa9.82□□□□□ -0.84
SPG11-208ENST00000558155 RSF1Q96T23 1441 aaPredicted RBP9.82□□□□□ -0.84
SPG11-208ENST00000558155 TOP2AP11388 1531 aaKnown RBP9.81□□□□□ -0.84
SPG11-208ENST00000558155 ZNF608Q9ULD9 1512 aaPredicted RBP9.8□□□□□ -0.84
SPG11-208ENST00000558155 ABCC8Q09428 1581 aa9.77□□□□□ -0.85
SPG11-208ENST00000558155 FBLN2P98095 1184 aa9.77□□□□□ -0.85
SPG11-208ENST00000558155 CACNB1Q02641 598 aaPredicted RBP9.77□□□□□ -0.85
SPG11-208ENST00000558155 PRDM2Q13029 1718 aa9.76□□□□□ -0.85
SPG11-208ENST00000558155 TOPBP1Q92547 1522 aa9.75□□□□□ -0.85
SPG11-208ENST00000558155 CCDC88BA6NC98 1476 aa9.73□□□□□ -0.85
SPG11-208ENST00000558155 AQRO60306 1485 aaKnown RBP eCLIP9.72□□□□□ -0.854e-6■■■■■ 31
SPG11-208ENST00000558155 ARAP1Q96P48 1450 aa9.7□□□□□ -0.86
SPG11-208ENST00000558155 EIF4G3O43432 1585 aaKnown RBP9.7□□□□□ -0.86
SPG11-208ENST00000558155 CHD1O14646 1710 aa9.69□□□□□ -0.86
SPG11-208ENST00000558155 DNMBPQ6XZF7 1577 aa9.68□□□□□ -0.86
SPG11-208ENST00000558155 CHMP7Q8WUX9 453 aaPredicted RBP9.67□□□□□ -0.86
SPG11-208ENST00000558155 TARBP1Q13395 1621 aaKnown RBP9.65□□□□□ -0.86
SPG11-208ENST00000558155 SOGA1O94964 1423 aa9.64□□□□□ -0.87
SPG11-208ENST00000558155 TDRD9Q8NDG6 1382 aaKnown RBP9.63□□□□□ -0.87
SPG11-208ENST00000558155 POLA1P09884 1462 aaPredicted RBP9.63□□□□□ -0.87
SPG11-208ENST00000558155 RAD54L2Q9Y4B4 1467 aa9.61□□□□□ -0.87
SPG11-208ENST00000558155 DCAF8L1A6NGE4 600 aa9.61□□□□□ -0.87
SPG11-208ENST00000558155 HOXD11P31277 338 aaPredicted RBP9.59□□□□□ -0.87
SPG11-208ENST00000558155 PPP4R3CPQ6ZMV5 832 aa9.59□□□□□ -0.87
SPG11-208ENST00000558155 RNF39Q9H2S5 420 aa9.59□□□□□ -0.87
SPG11-208ENST00000558155 SYNJ1O43426 1573 aa9.58□□□□□ -0.88
SPG11-208ENST00000558155 SNAPC4Q5SXM2 1469 aa9.58□□□□□ -0.88
SPG11-208ENST00000558155 CLASP1Q7Z460 1538 aa9.56□□□□□ -0.88
SPG11-208ENST00000558155 MAGI1Q96QZ7 1491 aaPredicted RBP9.56□□□□□ -0.88
SPG11-208ENST00000558155 WDR97A6NE52 1622 aa9.56□□□□□ -0.88
SPG11-208ENST00000558155 GRIN2BQ13224 1484 aa9.55□□□□□ -0.88
SPG11-208ENST00000558155 SYNJ2O15056 1496 aa9.54□□□□□ -0.88
SPG11-208ENST00000558155 FGD5Q6ZNL6 1462 aa9.53□□□□□ -0.88
SPG11-208ENST00000558155 GAPVD1Q14C86 1478 aa9.53□□□□□ -0.88
SPG11-208ENST00000558155 CUX1P39880 1505 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms