RNA–Protein interactions for RNA: ENST00000558138.1

SPG11-207, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 750 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-207ENST00000558138 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
SPG11-207ENST00000558138 CCDC180Q9P1Z9 1646 aa19.14■□□□□ 0.66
SPG11-207ENST00000558138 ABCC9O60706 1549 aa18.79■□□□□ 0.6
SPG11-207ENST00000558138 DCAF8L2P0C7V8 631 aa18.18■□□□□ 0.5
SPG11-207ENST00000558138 RB1CC1Q8TDY2 1594 aa18.05■□□□□ 0.48
SPG11-207ENST00000558138 NACADO15069 1562 aa18■□□□□ 0.47
SPG11-207ENST00000558138 ZCCHC6Q5VYS8 1495 aaKnown RBP17.94■□□□□ 0.46
SPG11-207ENST00000558138 MYO15BQ96JP2 1530 aa17.82■□□□□ 0.44
SPG11-207ENST00000558138 DCAF1Q9Y4B6 1507 aa17.76■□□□□ 0.43
SPG11-207ENST00000558138 UNC13AQ9UPW8 1703 aa17.6■□□□□ 0.41
SPG11-207ENST00000558138 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.4
SPG11-207ENST00000558138 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
SPG11-207ENST00000558138 BICRAQ9NZM4 1560 aa17.41■□□□□ 0.38
SPG11-207ENST00000558138 SHROOM4Q9ULL8 1493 aa17.26■□□□□ 0.35
SPG11-207ENST00000558138 DNAJC5BQ9UF47 199 aa17.12■□□□□ 0.33
SPG11-207ENST00000558138 EIF4G1Q04637 1599 aaKnown RBP17.02■□□□□ 0.31
SPG11-207ENST00000558138 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.3
SPG11-207ENST00000558138 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
SPG11-207ENST00000558138 SMARCA4P51532 1647 aa16.73■□□□□ 0.27
SPG11-207ENST00000558138 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
SPG11-207ENST00000558138 SMARCA2P51531 1590 aa16.63■□□□□ 0.25
SPG11-207ENST00000558138 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
SPG11-207ENST00000558138 MROH2BQ7Z745 1585 aa16.6■□□□□ 0.25
SPG11-207ENST00000558138 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
SPG11-207ENST00000558138 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
SPG11-207ENST00000558138 HMGXB3Q12766 1538 aa16.52■□□□□ 0.24
SPG11-207ENST00000558138 PEG3Q9GZU2 1588 aa16.49■□□□□ 0.23
SPG11-207ENST00000558138 WIZO95785 1651 aa16.46■□□□□ 0.23
SPG11-207ENST00000558138 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
SPG11-207ENST00000558138 TOP2AP11388 1531 aaKnown RBP16.28■□□□□ 0.2
SPG11-207ENST00000558138 ERCC6Q03468 1493 aa16.26■□□□□ 0.19
SPG11-207ENST00000558138 NESP48681 1621 aa16.23■□□□□ 0.19
SPG11-207ENST00000558138 LAMC3Q9Y6N6 1575 aa16.18■□□□□ 0.18
SPG11-207ENST00000558138 SUPT5HO00267 1087 aaKnown RBP16.16■□□□□ 0.18
SPG11-207ENST00000558138 CADPSQ9ULU8 1353 aa16.13■□□□□ 0.17
SPG11-207ENST00000558138 PDS5BQ9NTI5 1447 aa16.11■□□□□ 0.17
SPG11-207ENST00000558138 CCDC88BA6NC98 1476 aa16.07■□□□□ 0.16
SPG11-207ENST00000558138 KIF21AQ7Z4S6 1674 aa16.05■□□□□ 0.16
SPG11-207ENST00000558138 CFTRP13569 1480 aa16.01■□□□□ 0.15
SPG11-207ENST00000558138 CUX2O14529 1486 aa15.97■□□□□ 0.15
SPG11-207ENST00000558138 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
SPG11-207ENST00000558138 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
SPG11-207ENST00000558138 THOC2Q8NI27 1593 aaKnown RBP15.96■□□□□ 0.14
SPG11-207ENST00000558138 PRDM2Q13029 1718 aa15.94■□□□□ 0.14
SPG11-207ENST00000558138 MRC2Q9UBG0 1479 aa15.93■□□□□ 0.14
SPG11-207ENST00000558138 WDR62O43379 1518 aa15.84■□□□□ 0.13
SPG11-207ENST00000558138 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
SPG11-207ENST00000558138 ABCC8Q09428 1581 aa15.71■□□□□ 0.11
SPG11-207ENST00000558138 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
SPG11-207ENST00000558138 DNMBPQ6XZF7 1577 aa15.7■□□□□ 0.1
SPG11-207ENST00000558138 IFT140Q96RY7 1462 aa15.62■□□□□ 0.09
SPG11-207ENST00000558138 CUX1P39880 1505 aa15.58■□□□□ 0.08
SPG11-207ENST00000558138 POLA1P09884 1462 aaPredicted RBP15.57■□□□□ 0.08
SPG11-207ENST00000558138 FGD5Q6ZNL6 1462 aa15.56■□□□□ 0.08
SPG11-207ENST00000558138 SOGA1O94964 1423 aa15.53■□□□□ 0.08
SPG11-207ENST00000558138 ZNF608Q9ULD9 1512 aaPredicted RBP15.53■□□□□ 0.08
SPG11-207ENST00000558138 RAD54L2Q9Y4B4 1467 aa15.52■□□□□ 0.08
SPG11-207ENST00000558138 WRNQ14191 1432 aaPredicted RBP eCLIP15.52■□□□□ 0.08
SPG11-207ENST00000558138 EIF4G3O43432 1585 aaKnown RBP15.49■□□□□ 0.07
SPG11-207ENST00000558138 TARBP1Q13395 1621 aaKnown RBP15.49■□□□□ 0.07
SPG11-207ENST00000558138 AQRO60306 1485 aaKnown RBP eCLIP15.46■□□□□ 0.071e-7■■■□□ 18.1
SPG11-207ENST00000558138 SYNJ1O43426 1573 aa15.46■□□□□ 0.07
SPG11-207ENST00000558138 TOP2BQ02880 1626 aa15.46■□□□□ 0.06
SPG11-207ENST00000558138 BIVM-ERCC5R4GMW8 1640 aa15.45■□□□□ 0.06
SPG11-207ENST00000558138 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
SPG11-207ENST00000558138 DNAJC5Q9H3Z4 198 aa15.43■□□□□ 0.06
SPG11-207ENST00000558138 WDR97A6NE52 1622 aa15.39■□□□□ 0.05
SPG11-207ENST00000558138 FBLN2P98095 1184 aa15.39■□□□□ 0.05
SPG11-207ENST00000558138 ABCA10Q8WWZ4 1543 aa15.38■□□□□ 0.05
SPG11-207ENST00000558138 GAPVD1Q14C86 1478 aa15.35■□□□□ 0.05
SPG11-207ENST00000558138 OSCARQ8IYS5 282 aa15.35■□□□□ 0.05
SPG11-207ENST00000558138 GRIN2BQ13224 1484 aa15.34■□□□□ 0.05
SPG11-207ENST00000558138 SNAPC4Q5SXM2 1469 aa15.34■□□□□ 0.05
SPG11-207ENST00000558138 PBRM1Q86U86 1689 aa15.34■□□□□ 0.05
SPG11-207ENST00000558138 ABCA5Q8WWZ7 1642 aa15.31■□□□□ 0.04
SPG11-207ENST00000558138 CHD1O14646 1710 aa15.31■□□□□ 0.04
SPG11-207ENST00000558138 CHMP7Q8WUX9 453 aaPredicted RBP15.3■□□□□ 0.04
SPG11-207ENST00000558138 MAGI1Q96QZ7 1491 aaPredicted RBP15.29■□□□□ 0.04
SPG11-207ENST00000558138 TRIM41Q8WV44 630 aa15.24■□□□□ 0.03
SPG11-207ENST00000558138 SYNJ2O15056 1496 aa15.24■□□□□ 0.03
SPG11-207ENST00000558138 KIF27Q86VH2 1401 aa15.22■□□□□ 0.03
SPG11-207ENST00000558138 ERICH3Q5RHP9 1530 aa15.2■□□□□ 0.02
SPG11-207ENST00000558138 ADAMTS12P58397 1594 aa15.19■□□□□ 0.02
SPG11-207ENST00000558138 FHAD1B1AJZ9 1412 aa15.17■□□□□ 0.02
SPG11-207ENST00000558138 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
SPG11-207ENST00000558138 CUL7Q14999 1698 aa15.1■□□□□ 0.01
SPG11-207ENST00000558138 RIMBP3CA6NJZ7 1639 aa15.09■□□□□ 0.01
SPG11-207ENST00000558138 RIMBP3BA6NNM3 1639 aa15.09■□□□□ 0.01
SPG11-207ENST00000558138 RIMBP3Q9UFD9 1639 aa15.09■□□□□ 0.01
SPG11-207ENST00000558138 CLASP1Q7Z460 1538 aa15.08■□□□□ 0.01
SPG11-207ENST00000558138 IGF1RP08069 1367 aa15.08■□□□□ 0
SPG11-207ENST00000558138 ARHGEF11O15085 1522 aa15.07■□□□□ 0
SPG11-207ENST00000558138 CEP170Q5SW79 1584 aa15.06■□□□□ 0
SPG11-207ENST00000558138 CARMIL1Q5VZK9 1371 aa15.05■□□□□ -0
SPG11-207ENST00000558138 RUSC2Q8N2Y8 1516 aa15.03■□□□□ -0
SPG11-207ENST00000558138 NUP160Q12769 1436 aa15.02■□□□□ -0
SPG11-207ENST00000558138 CYB5RLQ6IPT4 315 aa14.99□□□□□ -0.01
SPG11-207ENST00000558138 CHIC1Q5VXU3 224 aa14.98□□□□□ -0.01
SPG11-207ENST00000558138 FAM9AQ8IZU1 332 aaPredicted RBP14.97□□□□□ -0.01
SPG11-207ENST00000558138 RAPGEF2Q9Y4G8 1499 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms