RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 NISCHQ9Y2I1 1504 aa35.84■■■■□ 3.33
VIPAS39-210ENST00000557466 CCDC180Q9P1Z9 1646 aa31.85■■■□□ 2.69
VIPAS39-210ENST00000557466 ABCC9O60706 1549 aa30.85■■■□□ 2.53
VIPAS39-210ENST00000557466 ZCCHC6Q5VYS8 1495 aaKnown RBP29.94■■■□□ 2.38
VIPAS39-210ENST00000557466 NACADO15069 1562 aa29.81■■■□□ 2.36
VIPAS39-210ENST00000557466 RB1CC1Q8TDY2 1594 aa29.8■■■□□ 2.36
VIPAS39-210ENST00000557466 DCAF8L2P0C7V8 631 aa29.72■■■□□ 2.35
VIPAS39-210ENST00000557466 MYO15BQ96JP2 1530 aa29.7■■■□□ 2.34
VIPAS39-210ENST00000557466 DCAF1Q9Y4B6 1507 aa29.67■■■□□ 2.34
VIPAS39-210ENST00000557466 UNC13AQ9UPW8 1703 aa29.25■■■□□ 2.27
VIPAS39-210ENST00000557466 SCRIBQ14160 1630 aa29.06■■■□□ 2.24
VIPAS39-210ENST00000557466 BICRAQ9NZM4 1560 aa28.92■■■□□ 2.22
VIPAS39-210ENST00000557466 PABPN1Q86U42 306 aaKnown RBP eCLIP28.8■■■□□ 2.2
VIPAS39-210ENST00000557466 SHROOM4Q9ULL8 1493 aa28.59■■■□□ 2.17
VIPAS39-210ENST00000557466 EIF4G1Q04637 1599 aaKnown RBP28.12■■■□□ 2.09
VIPAS39-210ENST00000557466 DNAJC5BQ9UF47 199 aa28.03■■■□□ 2.08
VIPAS39-210ENST00000557466 CC2D2AQ9P2K1 1620 aa27.96■■■□□ 2.07
VIPAS39-210ENST00000557466 CECR2Q9BXF3 1484 aa27.9■■■□□ 2.06
VIPAS39-210ENST00000557466 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
VIPAS39-210ENST00000557466 BAZ1AQ9NRL2 1556 aaPredicted RBP27.77■■■□□ 2.04
VIPAS39-210ENST00000557466 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
VIPAS39-210ENST00000557466 ATAD2BQ9ULI0 1458 aa27.54■■■□□ 2
VIPAS39-210ENST00000557466 SMARCA2P51531 1590 aa27.53■■■□□ 2
VIPAS39-210ENST00000557466 PEG3Q9GZU2 1588 aa27.52■■■□□ 2
VIPAS39-210ENST00000557466 NCAPD3P42695 1498 aa27.46■■□□□ 1.99
VIPAS39-210ENST00000557466 HMGXB3Q12766 1538 aa27.41■■□□□ 1.98
VIPAS39-210ENST00000557466 WIZO95785 1651 aa27.4■■□□□ 1.98
VIPAS39-210ENST00000557466 RSF1Q96T23 1441 aaPredicted RBP27.37■■□□□ 1.97
VIPAS39-210ENST00000557466 BAZ1BQ9UIG0 1483 aaKnown RBP27.33■■□□□ 1.97
VIPAS39-210ENST00000557466 TOP2AP11388 1531 aaKnown RBP27.11■■□□□ 1.93
VIPAS39-210ENST00000557466 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
VIPAS39-210ENST00000557466 NESP48681 1621 aa26.79■■□□□ 1.88
VIPAS39-210ENST00000557466 LAMC3Q9Y6N6 1575 aa26.75■■□□□ 1.87
VIPAS39-210ENST00000557466 CCDC88BA6NC98 1476 aa26.74■■□□□ 1.87
VIPAS39-210ENST00000557466 CADPSQ9ULU8 1353 aa26.65■■□□□ 1.86
VIPAS39-210ENST00000557466 CFTRP13569 1480 aa26.58■■□□□ 1.85
VIPAS39-210ENST00000557466 PRDM2Q13029 1718 aa26.56■■□□□ 1.84
VIPAS39-210ENST00000557466 KIF21AQ7Z4S6 1674 aa26.56■■□□□ 1.84
VIPAS39-210ENST00000557466 ERCC6Q03468 1493 aa26.55■■□□□ 1.84
VIPAS39-210ENST00000557466 PDS5BQ9NTI5 1447 aa26.48■■□□□ 1.83
VIPAS39-210ENST00000557466 FANCD2Q9BXW9 1451 aa26.4■■□□□ 1.82
VIPAS39-210ENST00000557466 THOC2Q8NI27 1593 aaKnown RBP26.39■■□□□ 1.82
VIPAS39-210ENST00000557466 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
VIPAS39-210ENST00000557466 MRC2Q9UBG0 1479 aa26.27■■□□□ 1.8
VIPAS39-210ENST00000557466 WDR62O43379 1518 aa26.2■■□□□ 1.79
VIPAS39-210ENST00000557466 CUX2O14529 1486 aa26.19■■□□□ 1.78
VIPAS39-210ENST00000557466 URB2Q14146 1524 aaKnown RBP26.15■■□□□ 1.78
VIPAS39-210ENST00000557466 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
VIPAS39-210ENST00000557466 TOPBP1Q92547 1522 aa26.03■■□□□ 1.76
VIPAS39-210ENST00000557466 ABCC8Q09428 1581 aa25.98■■□□□ 1.75
VIPAS39-210ENST00000557466 CUX1P39880 1505 aa25.93■■□□□ 1.74
VIPAS39-210ENST00000557466 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
VIPAS39-210ENST00000557466 BIVM-ERCC5R4GMW8 1640 aa25.81■■□□□ 1.72
VIPAS39-210ENST00000557466 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
VIPAS39-210ENST00000557466 WRNQ14191 1432 aaPredicted RBP eCLIP25.8■■□□□ 1.72
VIPAS39-210ENST00000557466 FGD5Q6ZNL6 1462 aa25.8■■□□□ 1.72
VIPAS39-210ENST00000557466 TOP2BQ02880 1626 aa25.78■■□□□ 1.72
VIPAS39-210ENST00000557466 IFT140Q96RY7 1462 aa25.77■■□□□ 1.72
VIPAS39-210ENST00000557466 TARBP1Q13395 1621 aaKnown RBP25.76■■□□□ 1.71
VIPAS39-210ENST00000557466 RAD54L2Q9Y4B4 1467 aa25.69■■□□□ 1.7
VIPAS39-210ENST00000557466 WDR97A6NE52 1622 aa25.67■■□□□ 1.7
VIPAS39-210ENST00000557466 ZNF608Q9ULD9 1512 aaPredicted RBP25.66■■□□□ 1.7
VIPAS39-210ENST00000557466 SOGA1O94964 1423 aa25.65■■□□□ 1.7
VIPAS39-210ENST00000557466 EIF4G3O43432 1585 aaKnown RBP25.63■■□□□ 1.69
VIPAS39-210ENST00000557466 ABCA10Q8WWZ4 1543 aa25.54■■□□□ 1.68
VIPAS39-210ENST00000557466 AQRO60306 1485 aaKnown RBP eCLIP25.51■■□□□ 1.67
VIPAS39-210ENST00000557466 ABCA5Q8WWZ7 1642 aa25.49■■□□□ 1.67
VIPAS39-210ENST00000557466 TDRD9Q8NDG6 1382 aaKnown RBP25.48■■□□□ 1.67
VIPAS39-210ENST00000557466 PBRM1Q86U86 1689 aa25.45■■□□□ 1.67
VIPAS39-210ENST00000557466 GAPVD1Q14C86 1478 aa25.39■■□□□ 1.65
VIPAS39-210ENST00000557466 GRIN2BQ13224 1484 aa25.35■■□□□ 1.65
VIPAS39-210ENST00000557466 DNAJC5Q9H3Z4 198 aa25.35■■□□□ 1.65
VIPAS39-210ENST00000557466 SNAPC4Q5SXM2 1469 aa25.32■■□□□ 1.64
VIPAS39-210ENST00000557466 CHD1O14646 1710 aa25.29■■□□□ 1.64
VIPAS39-210ENST00000557466 TRIM41Q8WV44 630 aa25.28■■□□□ 1.64
VIPAS39-210ENST00000557466 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
VIPAS39-210ENST00000557466 ERICH3Q5RHP9 1530 aa25.25■■□□□ 1.63
VIPAS39-210ENST00000557466 ADAMTS12P58397 1594 aa25.22■■□□□ 1.63
VIPAS39-210ENST00000557466 KIF27Q86VH2 1401 aa25.22■■□□□ 1.63
VIPAS39-210ENST00000557466 SYNJ2O15056 1496 aa25.17■■□□□ 1.62
VIPAS39-210ENST00000557466 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
VIPAS39-210ENST00000557466 RUSC2Q8N2Y8 1516 aa25.12■■□□□ 1.61
VIPAS39-210ENST00000557466 CUL7Q14999 1698 aa25.11■■□□□ 1.61
VIPAS39-210ENST00000557466 FHAD1B1AJZ9 1412 aa25.1■■□□□ 1.61
VIPAS39-210ENST00000557466 FBLN2P98095 1184 aa25.09■■□□□ 1.61
VIPAS39-210ENST00000557466 IGF1RP08069 1367 aa25.07■■□□□ 1.6
VIPAS39-210ENST00000557466 GRIN2AQ12879 1464 aa25.05■■□□□ 1.6
VIPAS39-210ENST00000557466 OSCARQ8IYS5 282 aa25.05■■□□□ 1.6
VIPAS39-210ENST00000557466 CHMP7Q8WUX9 453 aaPredicted RBP25.05■■□□□ 1.6
VIPAS39-210ENST00000557466 CLASP1Q7Z460 1538 aa24.97■■□□□ 1.59
VIPAS39-210ENST00000557466 CEP170Q5SW79 1584 aa24.97■■□□□ 1.59
VIPAS39-210ENST00000557466 CARMIL1Q5VZK9 1371 aa24.93■■□□□ 1.58
VIPAS39-210ENST00000557466 NUP160Q12769 1436 aa24.93■■□□□ 1.58
VIPAS39-210ENST00000557466 EEA1Q15075 1411 aa24.9■■□□□ 1.58
VIPAS39-210ENST00000557466 RAPGEF2Q9Y4G8 1499 aa24.84■■□□□ 1.57
VIPAS39-210ENST00000557466 PRXQ9BXM0 1461 aa24.83■■□□□ 1.56
VIPAS39-210ENST00000557466 FAM9AQ8IZU1 332 aaPredicted RBP24.78■■□□□ 1.56
VIPAS39-210ENST00000557466 CSRNP3Q8WYN3 585 aa24.78■■□□□ 1.56
VIPAS39-210ENST00000557466 RIMBP3CA6NJZ7 1639 aa24.78■■□□□ 1.56
VIPAS39-210ENST00000557466 RIMBP3BA6NNM3 1639 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms