RNA–Protein interactions for RNA: ENST00000557356.5

PSEN1-222, Transcript of presenilin 1, humanhuman

TSL 4

Gene PSEN1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-222ENST00000557356 NISCHQ9Y2I1 1504 aa18.87■□□□□ 0.61
PSEN1-222ENST00000557356 CCDC180Q9P1Z9 1646 aa16.76■□□□□ 0.27
PSEN1-222ENST00000557356 ABCC9O60706 1549 aa16.43■□□□□ 0.22
PSEN1-222ENST00000557356 DCAF8L2P0C7V8 631 aa15.89■□□□□ 0.13
PSEN1-222ENST00000557356 RB1CC1Q8TDY2 1594 aa15.84■□□□□ 0.13
PSEN1-222ENST00000557356 NACADO15069 1562 aa15.83■□□□□ 0.13
PSEN1-222ENST00000557356 MYO15BQ96JP2 1530 aa15.76■□□□□ 0.11
PSEN1-222ENST00000557356 ZCCHC6Q5VYS8 1495 aaKnown RBP15.68■□□□□ 0.1
PSEN1-222ENST00000557356 DCAF1Q9Y4B6 1507 aa15.65■□□□□ 0.1
PSEN1-222ENST00000557356 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
PSEN1-222ENST00000557356 UNC13AQ9UPW8 1703 aa15.3■□□□□ 0.04
PSEN1-222ENST00000557356 BICRAQ9NZM4 1560 aa15.25■□□□□ 0.03
PSEN1-222ENST00000557356 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
PSEN1-222ENST00000557356 SCRIBQ14160 1630 aa15.24■□□□□ 0.03
PSEN1-222ENST00000557356 AEBP2Q6ZN18 517 aaPredicted RBP15.23■□□□□ 0.03
PSEN1-222ENST00000557356 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
PSEN1-222ENST00000557356 EIF4G1Q04637 1599 aaKnown RBP14.9□□□□□ -0.02
PSEN1-222ENST00000557356 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
PSEN1-222ENST00000557356 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
PSEN1-222ENST00000557356 BAZ1AQ9NRL2 1556 aaPredicted RBP14.65□□□□□ -0.06
PSEN1-222ENST00000557356 NCAPD3P42695 1498 aa14.63□□□□□ -0.07
PSEN1-222ENST00000557356 SMARCA4P51532 1647 aa14.6□□□□□ -0.07
PSEN1-222ENST00000557356 SMARCA2P51531 1590 aa14.6□□□□□ -0.07
PSEN1-222ENST00000557356 ATAD2BQ9ULI0 1458 aa14.58□□□□□ -0.08
PSEN1-222ENST00000557356 CHIC1Q5VXU3 224 aa14.58□□□□□ -0.08
PSEN1-222ENST00000557356 HMGXB3Q12766 1538 aa14.5□□□□□ -0.09
PSEN1-222ENST00000557356 MROH2BQ7Z745 1585 aa14.49□□□□□ -0.09
PSEN1-222ENST00000557356 PEG3Q9GZU2 1588 aa14.49□□□□□ -0.09
PSEN1-222ENST00000557356 BAZ1BQ9UIG0 1483 aaKnown RBP14.48□□□□□ -0.09
PSEN1-222ENST00000557356 RSF1Q96T23 1441 aaPredicted RBP14.37□□□□□ -0.11
PSEN1-222ENST00000557356 WIZO95785 1651 aa14.3□□□□□ -0.12
PSEN1-222ENST00000557356 ERCC6Q03468 1493 aa14.23□□□□□ -0.13
PSEN1-222ENST00000557356 LAMC3Q9Y6N6 1575 aa14.22□□□□□ -0.13
PSEN1-222ENST00000557356 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
PSEN1-222ENST00000557356 TOP2AP11388 1531 aaKnown RBP14.21□□□□□ -0.13
PSEN1-222ENST00000557356 PDS5BQ9NTI5 1447 aa14.19□□□□□ -0.14
PSEN1-222ENST00000557356 NESP48681 1621 aa14.17□□□□□ -0.14
PSEN1-222ENST00000557356 CUX2O14529 1486 aa14.1□□□□□ -0.15
PSEN1-222ENST00000557356 CFTRP13569 1480 aa14.08□□□□□ -0.16
PSEN1-222ENST00000557356 CCDC88BA6NC98 1476 aa14.06□□□□□ -0.16
PSEN1-222ENST00000557356 SUPT5HO00267 1087 aaKnown RBP14.03□□□□□ -0.16
PSEN1-222ENST00000557356 FANCD2Q9BXW9 1451 aa14□□□□□ -0.17
PSEN1-222ENST00000557356 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
PSEN1-222ENST00000557356 MRC2Q9UBG0 1479 aa13.98□□□□□ -0.17
PSEN1-222ENST00000557356 KIF21AQ7Z4S6 1674 aa13.95□□□□□ -0.18
PSEN1-222ENST00000557356 THOC2Q8NI27 1593 aaKnown RBP13.93□□□□□ -0.18
PSEN1-222ENST00000557356 WDR62O43379 1518 aa13.89□□□□□ -0.19
PSEN1-222ENST00000557356 ABCC8Q09428 1581 aa13.87□□□□□ -0.19
PSEN1-222ENST00000557356 PRDM2Q13029 1718 aa13.85□□□□□ -0.19
PSEN1-222ENST00000557356 URB2Q14146 1524 aaKnown RBP13.8□□□□□ -0.2
PSEN1-222ENST00000557356 DNAJC5Q9H3Z4 198 aa13.75□□□□□ -0.21
PSEN1-222ENST00000557356 TOPBP1Q92547 1522 aa13.74□□□□□ -0.21
PSEN1-222ENST00000557356 IFT140Q96RY7 1462 aa13.73□□□□□ -0.21
PSEN1-222ENST00000557356 DNMBPQ6XZF7 1577 aa13.72□□□□□ -0.21
PSEN1-222ENST00000557356 SOGA1O94964 1423 aa13.64□□□□□ -0.23
PSEN1-222ENST00000557356 POLA1P09884 1462 aaPredicted RBP13.62□□□□□ -0.23
PSEN1-222ENST00000557356 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
PSEN1-222ENST00000557356 CUX1P39880 1505 aa13.59□□□□□ -0.23
PSEN1-222ENST00000557356 FGD5Q6ZNL6 1462 aa13.59□□□□□ -0.23
PSEN1-222ENST00000557356 WRNQ14191 1432 aaPredicted RBP eCLIP13.58□□□□□ -0.24
PSEN1-222ENST00000557356 ZNF608Q9ULD9 1512 aaPredicted RBP13.57□□□□□ -0.24
PSEN1-222ENST00000557356 TARBP1Q13395 1621 aaKnown RBP13.55□□□□□ -0.24
PSEN1-222ENST00000557356 RAD54L2Q9Y4B4 1467 aa13.55□□□□□ -0.24
PSEN1-222ENST00000557356 TDRD9Q8NDG6 1382 aaKnown RBP13.54□□□□□ -0.24
PSEN1-222ENST00000557356 AQRO60306 1485 aaKnown RBP eCLIP13.54□□□□□ -0.24
PSEN1-222ENST00000557356 WDR97A6NE52 1622 aa13.53□□□□□ -0.24
PSEN1-222ENST00000557356 TOP2BQ02880 1626 aa13.5□□□□□ -0.25
PSEN1-222ENST00000557356 EIF4G3O43432 1585 aaKnown RBP13.49□□□□□ -0.25
PSEN1-222ENST00000557356 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
PSEN1-222ENST00000557356 GRIN2BQ13224 1484 aa13.48□□□□□ -0.25
PSEN1-222ENST00000557356 FBLN2P98095 1184 aa13.47□□□□□ -0.25
PSEN1-222ENST00000557356 BIVM-ERCC5R4GMW8 1640 aa13.46□□□□□ -0.25
PSEN1-222ENST00000557356 CHMP7Q8WUX9 453 aaPredicted RBP13.46□□□□□ -0.25
PSEN1-222ENST00000557356 GAPVD1Q14C86 1478 aa13.46□□□□□ -0.25
PSEN1-222ENST00000557356 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
PSEN1-222ENST00000557356 SYNJ1O43426 1573 aa13.43□□□□□ -0.26
PSEN1-222ENST00000557356 SNAPC4Q5SXM2 1469 aa13.39□□□□□ -0.27
PSEN1-222ENST00000557356 SYNJ2O15056 1496 aa13.37□□□□□ -0.27
PSEN1-222ENST00000557356 ABCA5Q8WWZ7 1642 aa13.35□□□□□ -0.27
PSEN1-222ENST00000557356 KIF27Q86VH2 1401 aa13.34□□□□□ -0.27
PSEN1-222ENST00000557356 ERICH3Q5RHP9 1530 aa13.34□□□□□ -0.27
PSEN1-222ENST00000557356 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
PSEN1-222ENST00000557356 TRIM41Q8WV44 630 aa13.32□□□□□ -0.28
PSEN1-222ENST00000557356 PBRM1Q86U86 1689 aa13.31□□□□□ -0.28
PSEN1-222ENST00000557356 CHD1O14646 1710 aa13.3□□□□□ -0.28
PSEN1-222ENST00000557356 IGF1RP08069 1367 aa13.27□□□□□ -0.29
PSEN1-222ENST00000557356 GRIN2AQ12879 1464 aa13.26□□□□□ -0.29
PSEN1-222ENST00000557356 ADAMTS12P58397 1594 aa13.23□□□□□ -0.29
PSEN1-222ENST00000557356 ARHGEF11O15085 1522 aa13.23□□□□□ -0.29
PSEN1-222ENST00000557356 NUP160Q12769 1436 aa13.22□□□□□ -0.29
PSEN1-222ENST00000557356 CARMIL1Q5VZK9 1371 aa13.21□□□□□ -0.29
PSEN1-222ENST00000557356 CYB5RLQ6IPT4 315 aa13.21□□□□□ -0.29
PSEN1-222ENST00000557356 CLASP1Q7Z460 1538 aa13.21□□□□□ -0.29
PSEN1-222ENST00000557356 RIMBP3CA6NJZ7 1639 aa13.19□□□□□ -0.3
PSEN1-222ENST00000557356 RIMBP3BA6NNM3 1639 aa13.19□□□□□ -0.3
PSEN1-222ENST00000557356 RIMBP3Q9UFD9 1639 aa13.19□□□□□ -0.3
PSEN1-222ENST00000557356 CUL7Q14999 1698 aa13.18□□□□□ -0.3
PSEN1-222ENST00000557356 JPH4Q96JJ6 628 aa13.17□□□□□ -0.3
PSEN1-222ENST00000557356 CEP170Q5SW79 1584 aa13.13□□□□□ -0.31
PSEN1-222ENST00000557356 KIAA0586Q9BVV6 1533 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms