RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 NISCHQ9Y2I1 1504 aa55.33■■■■■ 6.45
SIX4-203ENST00000556952 CCDC180Q9P1Z9 1646 aa49.11■■■■■ 5.45
SIX4-203ENST00000556952 ABCC9O60706 1549 aa47.8■■■■■ 5.24
SIX4-203ENST00000556952 ZCCHC6Q5VYS8 1495 aaKnown RBP46.16■■■■■ 4.98
SIX4-203ENST00000556952 RB1CC1Q8TDY2 1594 aa46.06■■■■■ 4.96
SIX4-203ENST00000556952 DCAF8L2P0C7V8 631 aa46.05■■■■■ 4.96
SIX4-203ENST00000556952 NACADO15069 1562 aa46.04■■■■■ 4.96
SIX4-203ENST00000556952 MYO15BQ96JP2 1530 aa45.82■■■■■ 4.93
SIX4-203ENST00000556952 DCAF1Q9Y4B6 1507 aa45.75■■■■■ 4.91
SIX4-203ENST00000556952 UNC13AQ9UPW8 1703 aa45.2■■■■■ 4.83
SIX4-203ENST00000556952 SCRIBQ14160 1630 aa44.88■■■■■ 4.78
SIX4-203ENST00000556952 BICRAQ9NZM4 1560 aa44.74■■■■■ 4.75
SIX4-203ENST00000556952 PABPN1Q86U42 306 aaKnown RBP eCLIP44.67■■■■■ 4.74
SIX4-203ENST00000556952 SHROOM4Q9ULL8 1493 aa44.23■■■■■ 4.67
SIX4-203ENST00000556952 DNAJC5BQ9UF47 199 aa43.63■■■■■ 4.58
SIX4-203ENST00000556952 EIF4G1Q04637 1599 aaKnown RBP43.49■■■■■ 4.55
SIX4-203ENST00000556952 CC2D2AQ9P2K1 1620 aa43.27■■■■■ 4.52
SIX4-203ENST00000556952 CECR2Q9BXF3 1484 aa43.12■■■■■ 4.49
SIX4-203ENST00000556952 SMARCA4P51532 1647 aa42.92■■■■■ 4.46
SIX4-203ENST00000556952 BAZ1AQ9NRL2 1556 aaPredicted RBP42.85■■■■■ 4.45
SIX4-203ENST00000556952 MROH2BQ7Z745 1585 aa42.69■■■■■ 4.42
SIX4-203ENST00000556952 ATAD2BQ9ULI0 1458 aa42.57■■■■■ 4.4
SIX4-203ENST00000556952 SMARCA2P51531 1590 aa42.51■■■■■ 4.4
SIX4-203ENST00000556952 PEG3Q9GZU2 1588 aa42.47■■■■■ 4.39
SIX4-203ENST00000556952 NCAPD3P42695 1498 aa42.46■■■■■ 4.39
SIX4-203ENST00000556952 RSF1Q96T23 1441 aaPredicted RBP42.38■■■■■ 4.37
SIX4-203ENST00000556952 HMGXB3Q12766 1538 aa42.33■■■■■ 4.37
SIX4-203ENST00000556952 SUPT5HO00267 1087 aaKnown RBP42.3■■■■■ 4.36
SIX4-203ENST00000556952 WIZO95785 1651 aa42.29■■■■■ 4.36
SIX4-203ENST00000556952 BAZ1BQ9UIG0 1483 aaKnown RBP42.22■■■■■ 4.35
SIX4-203ENST00000556952 TOP2AP11388 1531 aaKnown RBP41.79■■■■■ 4.28
SIX4-203ENST00000556952 NESP48681 1621 aa41.48■■■■■ 4.23
SIX4-203ENST00000556952 LAMC3Q9Y6N6 1575 aa41.34■■■■■ 4.21
SIX4-203ENST00000556952 CCDC88BA6NC98 1476 aa41.28■■■■■ 4.2
SIX4-203ENST00000556952 CADPSQ9ULU8 1353 aa41.23■■■■■ 4.19
SIX4-203ENST00000556952 ERCC6Q03468 1493 aa41.12■■■■■ 4.17
SIX4-203ENST00000556952 CFTRP13569 1480 aa41.08■■■■■ 4.17
SIX4-203ENST00000556952 KIF21AQ7Z4S6 1674 aa41.05■■■■■ 4.16
SIX4-203ENST00000556952 PDS5BQ9NTI5 1447 aa40.99■■■■■ 4.15
SIX4-203ENST00000556952 PRDM2Q13029 1718 aa40.92■■■■■ 4.14
SIX4-203ENST00000556952 THOC2Q8NI27 1593 aaKnown RBP40.81■■■■■ 4.12
SIX4-203ENST00000556952 FANCD2Q9BXW9 1451 aa40.8■■■■■ 4.12
SIX4-203ENST00000556952 CEP164Q9UPV0 1460 aa40.73■■■■■ 4.11
SIX4-203ENST00000556952 MRC2Q9UBG0 1479 aa40.61■■■■■ 4.09
SIX4-203ENST00000556952 CUX2O14529 1486 aa40.58■■■■■ 4.09
SIX4-203ENST00000556952 WDR62O43379 1518 aa40.51■■■■■ 4.08
SIX4-203ENST00000556952 URB2Q14146 1524 aaKnown RBP40.43■■■■■ 4.06
SIX4-203ENST00000556952 CHIC1Q5VXU3 224 aa40.31■■■■■ 4.04
SIX4-203ENST00000556952 TOPBP1Q92547 1522 aa40.21■■■■■ 4.03
SIX4-203ENST00000556952 DNMBPQ6XZF7 1577 aa40.18■■■■■ 4.02
SIX4-203ENST00000556952 ABCC8Q09428 1581 aa40.12■■■■■ 4.01
SIX4-203ENST00000556952 CUX1P39880 1505 aa40.03■■■■■ 4
SIX4-203ENST00000556952 WRNQ14191 1432 aaPredicted RBP eCLIP39.94■■■■□ 3.98
SIX4-203ENST00000556952 TRIM41Q8WV44 630 aa39.91■■■■□ 3.98
SIX4-203ENST00000556952 POLA1P09884 1462 aaPredicted RBP39.89■■■■□ 3.98
SIX4-203ENST00000556952 IFT140Q96RY7 1462 aa39.84■■■■□ 3.97
SIX4-203ENST00000556952 FGD5Q6ZNL6 1462 aa39.83■■■■□ 3.97
SIX4-203ENST00000556952 SYNJ1O43426 1573 aa39.82■■■■□ 3.96
SIX4-203ENST00000556952 TARBP1Q13395 1621 aaKnown RBP39.79■■■■□ 3.96
SIX4-203ENST00000556952 BIVM-ERCC5R4GMW8 1640 aa39.77■■■■□ 3.96
SIX4-203ENST00000556952 TOP2BQ02880 1626 aa39.76■■■■□ 3.96
SIX4-203ENST00000556952 RAD54L2Q9Y4B4 1467 aa39.73■■■■□ 3.95
SIX4-203ENST00000556952 ZNF608Q9ULD9 1512 aaPredicted RBP39.72■■■■□ 3.95
SIX4-203ENST00000556952 SOGA1O94964 1423 aa39.67■■■■□ 3.94
SIX4-203ENST00000556952 EIF4G3O43432 1585 aaKnown RBP39.6■■■■□ 3.93
SIX4-203ENST00000556952 WDR97A6NE52 1622 aa39.58■■■■□ 3.93
SIX4-203ENST00000556952 AQRO60306 1485 aaKnown RBP eCLIP39.49■■■■□ 3.91
SIX4-203ENST00000556952 TDRD9Q8NDG6 1382 aaKnown RBP39.44■■■■□ 3.9
SIX4-203ENST00000556952 ABCA10Q8WWZ4 1543 aa39.43■■■■□ 3.9
SIX4-203ENST00000556952 ABCA5Q8WWZ7 1642 aa39.32■■■■□ 3.89
SIX4-203ENST00000556952 PBRM1Q86U86 1689 aa39.26■■■■□ 3.88
SIX4-203ENST00000556952 GAPVD1Q14C86 1478 aa39.24■■■■□ 3.87
SIX4-203ENST00000556952 EEA1Q15075 1411 aa39.21■■■■□ 3.87
SIX4-203ENST00000556952 GRIN2BQ13224 1484 aa39.19■■■■□ 3.86
SIX4-203ENST00000556952 SNAPC4Q5SXM2 1469 aa39.14■■■■□ 3.86
SIX4-203ENST00000556952 CHD1O14646 1710 aa39.1■■■■□ 3.85
SIX4-203ENST00000556952 MAGI1Q96QZ7 1491 aaPredicted RBP39.05■■■■□ 3.84
SIX4-203ENST00000556952 RUSC2Q8N2Y8 1516 aa39.05■■■■□ 3.84
SIX4-203ENST00000556952 FAM9AQ8IZU1 332 aaPredicted RBP39.03■■■■□ 3.84
SIX4-203ENST00000556952 DNAJC5Q9H3Z4 198 aa38.99■■■■□ 3.83
SIX4-203ENST00000556952 KIF27Q86VH2 1401 aa38.99■■■■□ 3.83
SIX4-203ENST00000556952 ERICH3Q5RHP9 1530 aa38.96■■■■□ 3.83
SIX4-203ENST00000556952 ADAMTS12P58397 1594 aa38.92■■■■□ 3.82
SIX4-203ENST00000556952 SYNJ2O15056 1496 aa38.91■■■■□ 3.82
SIX4-203ENST00000556952 FBLN2P98095 1184 aa38.91■■■■□ 3.82
SIX4-203ENST00000556952 OSCARQ8IYS5 282 aa38.88■■■■□ 3.81
SIX4-203ENST00000556952 CSRNP3Q8WYN3 585 aa38.86■■■■□ 3.81
SIX4-203ENST00000556952 CHMP7Q8WUX9 453 aaPredicted RBP38.81■■■■□ 3.8
SIX4-203ENST00000556952 FHAD1B1AJZ9 1412 aa38.77■■■■□ 3.8
SIX4-203ENST00000556952 KIF21BO75037 1637 aa38.75■■■■□ 3.79
SIX4-203ENST00000556952 IGF1RP08069 1367 aa38.74■■■■□ 3.79
SIX4-203ENST00000556952 GRIN2AQ12879 1464 aa38.71■■■■□ 3.79
SIX4-203ENST00000556952 CUL7Q14999 1698 aa38.69■■■■□ 3.78
SIX4-203ENST00000556952 LOC105371045A0A1W2PR82 267 aa38.63■■■■□ 3.77
SIX4-203ENST00000556952 PRXQ9BXM0 1461 aa38.61■■■■□ 3.77
SIX4-203ENST00000556952 CLASP1Q7Z460 1538 aa38.61■■■■□ 3.77
SIX4-203ENST00000556952 GOLGA3Q08378 1498 aa38.58■■■■□ 3.77
SIX4-203ENST00000556952 CEP170Q5SW79 1584 aa38.57■■■■□ 3.77
SIX4-203ENST00000556952 NUP160Q12769 1436 aa38.52■■■■□ 3.76
SIX4-203ENST00000556952 CARMIL1Q5VZK9 1371 aa38.51■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms