RNA–Protein interactions for RNA: ENST00000556951.5

PSEN1-219, Transcript of presenilin 1, humanhuman

TSL 2

Gene PSEN1, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-219ENST00000556951 NISCHQ9Y2I1 1504 aa32.27■■■□□ 2.76
PSEN1-219ENST00000556951 ABCC9O60706 1549 aa30.56■■■□□ 2.48
PSEN1-219ENST00000556951 DNAJC5BQ9UF47 199 aa30.04■■■□□ 2.4
PSEN1-219ENST00000556951 CCDC180Q9P1Z9 1646 aa29.17■■■□□ 2.26
PSEN1-219ENST00000556951 DNAJC5Q9H3Z4 198 aa28.68■■■□□ 2.18
PSEN1-219ENST00000556951 RB1CC1Q8TDY2 1594 aa28.46■■■□□ 2.15
PSEN1-219ENST00000556951 PABPN1Q86U42 306 aaKnown RBP eCLIP28.19■■■□□ 2.1
PSEN1-219ENST00000556951 NACADO15069 1562 aa27.9■■■□□ 2.06
PSEN1-219ENST00000556951 UNC13AQ9UPW8 1703 aa27.89■■■□□ 2.05
PSEN1-219ENST00000556951 BICRAQ9NZM4 1560 aa27.73■■■□□ 2.03
PSEN1-219ENST00000556951 CECR2Q9BXF3 1484 aa27.7■■■□□ 2.02
PSEN1-219ENST00000556951 CC2D2AQ9P2K1 1620 aa27.57■■■□□ 2
PSEN1-219ENST00000556951 DCAF8L2P0C7V8 631 aa27.45■■□□□ 1.98
PSEN1-219ENST00000556951 SHROOM4Q9ULL8 1493 aa27.18■■□□□ 1.94
PSEN1-219ENST00000556951 EIF4G1Q04637 1599 aaKnown RBP27.14■■□□□ 1.93
PSEN1-219ENST00000556951 MYO15BQ96JP2 1530 aa27.13■■□□□ 1.93
PSEN1-219ENST00000556951 CUX2O14529 1486 aa26.99■■□□□ 1.91
PSEN1-219ENST00000556951 TRIM41Q8WV44 630 aa26.73■■□□□ 1.87
PSEN1-219ENST00000556951 ZCCHC6Q5VYS8 1495 aaKnown RBP26.62■■□□□ 1.85
PSEN1-219ENST00000556951 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
PSEN1-219ENST00000556951 ERCC6Q03468 1493 aa26.48■■□□□ 1.83
PSEN1-219ENST00000556951 SCRIBQ14160 1630 aa26.47■■□□□ 1.83
PSEN1-219ENST00000556951 THOC2Q8NI27 1593 aaKnown RBP25.91■■□□□ 1.74
PSEN1-219ENST00000556951 NESP48681 1621 aa25.84■■□□□ 1.73
PSEN1-219ENST00000556951 NCAPD3P42695 1498 aa25.79■■□□□ 1.72
PSEN1-219ENST00000556951 SMARCA2P51531 1590 aa25.57■■□□□ 1.68
PSEN1-219ENST00000556951 AEBP2Q6ZN18 517 aaPredicted RBP25.54■■□□□ 1.68
PSEN1-219ENST00000556951 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
PSEN1-219ENST00000556951 KIF21AQ7Z4S6 1674 aa25.5■■□□□ 1.67
PSEN1-219ENST00000556951 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
PSEN1-219ENST00000556951 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
PSEN1-219ENST00000556951 HMGXB3Q12766 1538 aa25.45■■□□□ 1.66
PSEN1-219ENST00000556951 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
PSEN1-219ENST00000556951 RIMBP3CA6NJZ7 1639 aa25.36■■□□□ 1.65
PSEN1-219ENST00000556951 RIMBP3BA6NNM3 1639 aa25.36■■□□□ 1.65
PSEN1-219ENST00000556951 RIMBP3Q9UFD9 1639 aa25.36■■□□□ 1.65
PSEN1-219ENST00000556951 PDS5BQ9NTI5 1447 aa25.32■■□□□ 1.64
PSEN1-219ENST00000556951 SMARCA4P51532 1647 aa25.23■■□□□ 1.63
PSEN1-219ENST00000556951 WDR62O43379 1518 aa25.2■■□□□ 1.62
PSEN1-219ENST00000556951 MRC2Q9UBG0 1479 aa25.19■■□□□ 1.62
PSEN1-219ENST00000556951 TRHP20396 242 aaPredicted RBP25.16■■□□□ 1.62
PSEN1-219ENST00000556951 BAZ1BQ9UIG0 1483 aaKnown RBP25.13■■□□□ 1.61
PSEN1-219ENST00000556951 ARHGEF11O15085 1522 aa25.09■■□□□ 1.61
PSEN1-219ENST00000556951 PEG3Q9GZU2 1588 aa25.01■■□□□ 1.59
PSEN1-219ENST00000556951 CYB5RLQ6IPT4 315 aa24.97■■□□□ 1.59
PSEN1-219ENST00000556951 CADPSQ9ULU8 1353 aa24.9■■□□□ 1.58
PSEN1-219ENST00000556951 MROH2BQ7Z745 1585 aa24.89■■□□□ 1.58
PSEN1-219ENST00000556951 CEP164Q9UPV0 1460 aa24.78■■□□□ 1.56
PSEN1-219ENST00000556951 ILDR1Q86SU0 546 aaPredicted RBP24.76■■□□□ 1.55
PSEN1-219ENST00000556951 ARAP1Q96P48 1450 aa24.74■■□□□ 1.55
PSEN1-219ENST00000556951 FANCD2Q9BXW9 1451 aa24.62■■□□□ 1.53
PSEN1-219ENST00000556951 URB2Q14146 1524 aaKnown RBP24.53■■□□□ 1.52
PSEN1-219ENST00000556951 WIZO95785 1651 aa24.53■■□□□ 1.52
PSEN1-219ENST00000556951 ZNF608Q9ULD9 1512 aaPredicted RBP24.46■■□□□ 1.51
PSEN1-219ENST00000556951 RSF1Q96T23 1441 aaPredicted RBP24.46■■□□□ 1.51
PSEN1-219ENST00000556951 CHD1O14646 1710 aa24.4■■□□□ 1.5
PSEN1-219ENST00000556951 CFTRP13569 1480 aa24.39■■□□□ 1.5
PSEN1-219ENST00000556951 IFT140Q96RY7 1462 aa24.35■■□□□ 1.49
PSEN1-219ENST00000556951 EIF4G3O43432 1585 aaKnown RBP24.27■■□□□ 1.48
PSEN1-219ENST00000556951 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
PSEN1-219ENST00000556951 FBLN2P98095 1184 aa24.14■■□□□ 1.45
PSEN1-219ENST00000556951 CLASP1Q7Z460 1538 aa24.07■■□□□ 1.44
PSEN1-219ENST00000556951 AQRO60306 1485 aaKnown RBP eCLIP24.05■■□□□ 1.44
PSEN1-219ENST00000556951 PRDM2Q13029 1718 aa24.01■■□□□ 1.43
PSEN1-219ENST00000556951 TOPBP1Q92547 1522 aa24■■□□□ 1.43
PSEN1-219ENST00000556951 KDM4FA0A1W2PPD8 638 aa23.97■■□□□ 1.43
PSEN1-219ENST00000556951 CCDC88BA6NC98 1476 aa23.96■■□□□ 1.43
PSEN1-219ENST00000556951 TARBP1Q13395 1621 aaKnown RBP23.93■■□□□ 1.42
PSEN1-219ENST00000556951 GAPVD1Q14C86 1478 aa23.91■■□□□ 1.42
PSEN1-219ENST00000556951 SYNJ1O43426 1573 aa23.9■■□□□ 1.42
PSEN1-219ENST00000556951 ABCC8Q09428 1581 aa23.85■■□□□ 1.41
PSEN1-219ENST00000556951 KIF13AQ9H1H9 1805 aa23.84■■□□□ 1.41
PSEN1-219ENST00000556951 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
PSEN1-219ENST00000556951 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
PSEN1-219ENST00000556951 CHMP7Q8WUX9 453 aaPredicted RBP23.74■■□□□ 1.39
PSEN1-219ENST00000556951 ERCC6L2Q5T890 1561 aa23.7■■□□□ 1.38
PSEN1-219ENST00000556951 POLA1P09884 1462 aaPredicted RBP23.68■■□□□ 1.38
PSEN1-219ENST00000556951 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
PSEN1-219ENST00000556951 TDRD9Q8NDG6 1382 aaKnown RBP23.65■■□□□ 1.38
PSEN1-219ENST00000556951 MAGI1Q96QZ7 1491 aaPredicted RBP23.64■■□□□ 1.38
PSEN1-219ENST00000556951 FBXO41Q8TF61 875 aa23.62■■□□□ 1.37
PSEN1-219ENST00000556951 HECW2Q9P2P5 1572 aa23.59■■□□□ 1.37
PSEN1-219ENST00000556951 SOGA1O94964 1423 aa23.59■■□□□ 1.37
PSEN1-219ENST00000556951 SYNJ2O15056 1496 aa23.58■■□□□ 1.37
PSEN1-219ENST00000556951 WDR97A6NE52 1622 aa23.58■■□□□ 1.36
PSEN1-219ENST00000556951 KDM6BO15054 1643 aa23.55■■□□□ 1.36
PSEN1-219ENST00000556951 GRIN2BQ13224 1484 aa23.48■■□□□ 1.35
PSEN1-219ENST00000556951 FAM69CQ0P6D2 419 aa23.46■■□□□ 1.35
PSEN1-219ENST00000556951 FGD5Q6ZNL6 1462 aa23.46■■□□□ 1.35
PSEN1-219ENST00000556951 ABCC10Q5T3U5 1492 aa23.45■■□□□ 1.34
PSEN1-219ENST00000556951 LMTK3Q96Q04 1460 aa23.45■■□□□ 1.34
PSEN1-219ENST00000556951 ADGRL1O94910 1474 aa23.41■■□□□ 1.34
PSEN1-219ENST00000556951 CUX1P39880 1505 aa23.38■■□□□ 1.33
PSEN1-219ENST00000556951 CEP170Q5SW79 1584 aa23.38■■□□□ 1.33
PSEN1-219ENST00000556951 DIP2BQ9P265 1576 aa23.35■■□□□ 1.33
PSEN1-219ENST00000556951 PBRM1Q86U86 1689 aa23.33■■□□□ 1.33
PSEN1-219ENST00000556951 SOCS7O14512 581 aa23.31■■□□□ 1.32
PSEN1-219ENST00000556951 TSPOAP1O95153 1857 aa23.28■■□□□ 1.32
PSEN1-219ENST00000556951 SHROOM2Q13796 1616 aa23.28■■□□□ 1.32
PSEN1-219ENST00000556951 MAPKBP1O60336 1514 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms