RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 NISCHQ9Y2I1 1504 aa22.9■■□□□ 1.26
TMEM260-213ENST00000556929 AEBP2Q6ZN18 517 aaPredicted RBP22.51■■□□□ 1.19
TMEM260-213ENST00000556929 CHIC1Q5VXU3 224 aa21.54■■□□□ 1.04
TMEM260-213ENST00000556929 CCDC180Q9P1Z9 1646 aa20.27■□□□□ 0.84
TMEM260-213ENST00000556929 ABCC9O60706 1549 aa19.41■□□□□ 0.7
TMEM260-213ENST00000556929 SENP3Q9H4L4 574 aaPredicted RBP19.16■□□□□ 0.66
TMEM260-213ENST00000556929 ZCCHC6Q5VYS8 1495 aaKnown RBP19.15■□□□□ 0.66
TMEM260-213ENST00000556929 DCAF8L2P0C7V8 631 aa19■□□□□ 0.63
TMEM260-213ENST00000556929 DCAF1Q9Y4B6 1507 aa18.98■□□□□ 0.63
TMEM260-213ENST00000556929 NACADO15069 1562 aa18.94■□□□□ 0.62
TMEM260-213ENST00000556929 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
TMEM260-213ENST00000556929 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
TMEM260-213ENST00000556929 RB1CC1Q8TDY2 1594 aa18.89■□□□□ 0.62
TMEM260-213ENST00000556929 UNC13AQ9UPW8 1703 aa18.51■□□□□ 0.55
TMEM260-213ENST00000556929 SCRIBQ14160 1630 aa18.48■□□□□ 0.55
TMEM260-213ENST00000556929 SHROOM4Q9ULL8 1493 aa18.27■□□□□ 0.52
TMEM260-213ENST00000556929 BICRAQ9NZM4 1560 aa18.25■□□□□ 0.51
TMEM260-213ENST00000556929 PABPN1Q86U42 306 aaKnown RBP eCLIP18.18■□□□□ 0.5
TMEM260-213ENST00000556929 FOXD1Q16676 465 aa17.84■□□□□ 0.45
TMEM260-213ENST00000556929 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
TMEM260-213ENST00000556929 CECR2Q9BXF3 1484 aa17.76■□□□□ 0.43
TMEM260-213ENST00000556929 BAZ1AQ9NRL2 1556 aaPredicted RBP17.75■□□□□ 0.43
TMEM260-213ENST00000556929 SMARCA4P51532 1647 aa17.72■□□□□ 0.43
TMEM260-213ENST00000556929 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
TMEM260-213ENST00000556929 CC2D2AQ9P2K1 1620 aa17.61■□□□□ 0.41
TMEM260-213ENST00000556929 RSF1Q96T23 1441 aaPredicted RBP17.55■□□□□ 0.4
TMEM260-213ENST00000556929 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
TMEM260-213ENST00000556929 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
TMEM260-213ENST00000556929 WIZO95785 1651 aa17.51■□□□□ 0.39
TMEM260-213ENST00000556929 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
TMEM260-213ENST00000556929 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
TMEM260-213ENST00000556929 DNAJC5BQ9UF47 199 aa17.43■□□□□ 0.38
TMEM260-213ENST00000556929 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
TMEM260-213ENST00000556929 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
TMEM260-213ENST00000556929 SUPT5HO00267 1087 aaKnown RBP17.4■□□□□ 0.38
TMEM260-213ENST00000556929 TOP2AP11388 1531 aaKnown RBP17.34■□□□□ 0.37
TMEM260-213ENST00000556929 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
TMEM260-213ENST00000556929 CCDC88BA6NC98 1476 aa17.11■□□□□ 0.33
TMEM260-213ENST00000556929 LAMC3Q9Y6N6 1575 aa16.98■□□□□ 0.31
TMEM260-213ENST00000556929 PRDM2Q13029 1718 aa16.96■□□□□ 0.3
TMEM260-213ENST00000556929 CADPSQ9ULU8 1353 aa16.94■□□□□ 0.3
TMEM260-213ENST00000556929 CFTRP13569 1480 aa16.92■□□□□ 0.3
TMEM260-213ENST00000556929 NESP48681 1621 aa16.89■□□□□ 0.29
TMEM260-213ENST00000556929 PPP6R1Q9UPN7 881 aa16.82■□□□□ 0.28
TMEM260-213ENST00000556929 PDS5BQ9NTI5 1447 aa16.81■□□□□ 0.28
TMEM260-213ENST00000556929 KIF21AQ7Z4S6 1674 aa16.79■□□□□ 0.28
TMEM260-213ENST00000556929 ADRA2BP18089 450 aa16.78■□□□□ 0.28
TMEM260-213ENST00000556929 FANCD2Q9BXW9 1451 aa16.76■□□□□ 0.27
TMEM260-213ENST00000556929 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
TMEM260-213ENST00000556929 CEP164Q9UPV0 1460 aa16.73■□□□□ 0.27
TMEM260-213ENST00000556929 PIAS4Q8N2W9 510 aaPredicted RBP16.71■□□□□ 0.27
TMEM260-213ENST00000556929 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
TMEM260-213ENST00000556929 MSH5O43196 834 aa16.61■□□□□ 0.25
TMEM260-213ENST00000556929 ABCC8Q09428 1581 aa16.6■□□□□ 0.25
TMEM260-213ENST00000556929 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
TMEM260-213ENST00000556929 DNMBPQ6XZF7 1577 aa16.57■□□□□ 0.24
TMEM260-213ENST00000556929 WRNQ14191 1432 aaPredicted RBP eCLIP16.57■□□□□ 0.24
TMEM260-213ENST00000556929 WDR62O43379 1518 aa16.55■□□□□ 0.24
TMEM260-213ENST00000556929 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
TMEM260-213ENST00000556929 BIVM-ERCC5R4GMW8 1640 aa16.54■□□□□ 0.24
TMEM260-213ENST00000556929 TOPBP1Q92547 1522 aa16.53■□□□□ 0.24
TMEM260-213ENST00000556929 TOP2BQ02880 1626 aa16.52■□□□□ 0.24
TMEM260-213ENST00000556929 CUX1P39880 1505 aa16.52■□□□□ 0.24
TMEM260-213ENST00000556929 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
TMEM260-213ENST00000556929 TRIM41Q8WV44 630 aa16.44■□□□□ 0.22
TMEM260-213ENST00000556929 FGD5Q6ZNL6 1462 aa16.43■□□□□ 0.22
TMEM260-213ENST00000556929 CUX2O14529 1486 aa16.42■□□□□ 0.22
TMEM260-213ENST00000556929 POLA1P09884 1462 aaPredicted RBP16.41■□□□□ 0.22
TMEM260-213ENST00000556929 SOGA1O94964 1423 aa16.36■□□□□ 0.21
TMEM260-213ENST00000556929 IFT140Q96RY7 1462 aa16.35■□□□□ 0.21
TMEM260-213ENST00000556929 TARBP1Q13395 1621 aaKnown RBP16.34■□□□□ 0.21
TMEM260-213ENST00000556929 WDR97A6NE52 1622 aa16.33■□□□□ 0.2
TMEM260-213ENST00000556929 RAD54L2Q9Y4B4 1467 aa16.32■□□□□ 0.2
TMEM260-213ENST00000556929 ABCA10Q8WWZ4 1543 aa16.29■□□□□ 0.2
TMEM260-213ENST00000556929 EIF4G3O43432 1585 aaKnown RBP16.22■□□□□ 0.19
TMEM260-213ENST00000556929 KIF27Q86VH2 1401 aa16.21■□□□□ 0.19
TMEM260-213ENST00000556929 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
TMEM260-213ENST00000556929 ZNF608Q9ULD9 1512 aaPredicted RBP16.2■□□□□ 0.18
TMEM260-213ENST00000556929 PBRM1Q86U86 1689 aa16.2■□□□□ 0.18
TMEM260-213ENST00000556929 TDRD9Q8NDG6 1382 aaKnown RBP16.19■□□□□ 0.18
TMEM260-213ENST00000556929 GAPVD1Q14C86 1478 aa16.18■□□□□ 0.18
TMEM260-213ENST00000556929 AQRO60306 1485 aaKnown RBP eCLIP16.17■□□□□ 0.18
TMEM260-213ENST00000556929 EEA1Q15075 1411 aa16.15■□□□□ 0.18
TMEM260-213ENST00000556929 GRIN2BQ13224 1484 aa16.13■□□□□ 0.17
TMEM260-213ENST00000556929 RUSC2Q8N2Y8 1516 aa16.13■□□□□ 0.17
TMEM260-213ENST00000556929 ERICH3Q5RHP9 1530 aa16.12■□□□□ 0.17
TMEM260-213ENST00000556929 CUL7Q14999 1698 aa16.08■□□□□ 0.17
TMEM260-213ENST00000556929 FAM9AQ8IZU1 332 aaPredicted RBP16.07■□□□□ 0.16
TMEM260-213ENST00000556929 MAGI1Q96QZ7 1491 aaPredicted RBP16.06■□□□□ 0.16
TMEM260-213ENST00000556929 SNAPC4Q5SXM2 1469 aa16.05■□□□□ 0.16
TMEM260-213ENST00000556929 IGF1RP08069 1367 aa16.05■□□□□ 0.16
TMEM260-213ENST00000556929 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
TMEM260-213ENST00000556929 ADAMTS12P58397 1594 aa16.03■□□□□ 0.16
TMEM260-213ENST00000556929 FHAD1B1AJZ9 1412 aa16.01■□□□□ 0.15
TMEM260-213ENST00000556929 CARMIL1Q5VZK9 1371 aa16■□□□□ 0.15
TMEM260-213ENST00000556929 CHD1O14646 1710 aa15.99■□□□□ 0.15
TMEM260-213ENST00000556929 SYNJ2O15056 1496 aa15.98■□□□□ 0.15
TMEM260-213ENST00000556929 KIF21BO75037 1637 aa15.97■□□□□ 0.15
TMEM260-213ENST00000556929 CHMP7Q8WUX9 453 aaPredicted RBP15.96■□□□□ 0.15
TMEM260-213ENST00000556929 PRXQ9BXM0 1461 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms