RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NISCHQ9Y2I1 1504 aa42.16■■■■■ 4.34
SHMT2-225ENST00000556798 CCDC180Q9P1Z9 1646 aa37.44■■■■□ 3.58
SHMT2-225ENST00000556798 ABCC9O60706 1549 aa36.39■■■■□ 3.42
SHMT2-225ENST00000556798 ZCCHC6Q5VYS8 1495 aaKnown RBP35.2■■■■□ 3.23
SHMT2-225ENST00000556798 DCAF8L2P0C7V8 631 aa35.11■■■■□ 3.21
SHMT2-225ENST00000556798 RB1CC1Q8TDY2 1594 aa35.08■■■■□ 3.21
SHMT2-225ENST00000556798 NACADO15069 1562 aa35.07■■■■□ 3.2
SHMT2-225ENST00000556798 MYO15BQ96JP2 1530 aa34.88■■■■□ 3.17
SHMT2-225ENST00000556798 DCAF1Q9Y4B6 1507 aa34.85■■■■□ 3.17
SHMT2-225ENST00000556798 UNC13AQ9UPW8 1703 aa34.46■■■■□ 3.11
SHMT2-225ENST00000556798 SCRIBQ14160 1630 aa34.23■■■■□ 3.07
SHMT2-225ENST00000556798 BICRAQ9NZM4 1560 aa34.05■■■■□ 3.04
SHMT2-225ENST00000556798 PABPN1Q86U42 306 aaKnown RBP eCLIP34■■■■□ 3.03
SHMT2-225ENST00000556798 SHROOM4Q9ULL8 1493 aa33.59■■■□□ 2.97
SHMT2-225ENST00000556798 EIF4G1Q04637 1599 aaKnown RBP33.12■■■□□ 2.89
SHMT2-225ENST00000556798 DNAJC5BQ9UF47 199 aa33.11■■■□□ 2.89
SHMT2-225ENST00000556798 CC2D2AQ9P2K1 1620 aa32.95■■■□□ 2.86
SHMT2-225ENST00000556798 CECR2Q9BXF3 1484 aa32.85■■■□□ 2.85
SHMT2-225ENST00000556798 SMARCA4P51532 1647 aa32.73■■■□□ 2.83
SHMT2-225ENST00000556798 BAZ1AQ9NRL2 1556 aaPredicted RBP32.66■■■□□ 2.82
SHMT2-225ENST00000556798 MROH2BQ7Z745 1585 aa32.53■■■□□ 2.8
SHMT2-225ENST00000556798 ATAD2BQ9ULI0 1458 aa32.42■■■□□ 2.78
SHMT2-225ENST00000556798 SMARCA2P51531 1590 aa32.4■■■□□ 2.78
SHMT2-225ENST00000556798 PEG3Q9GZU2 1588 aa32.34■■■□□ 2.77
SHMT2-225ENST00000556798 NCAPD3P42695 1498 aa32.31■■■□□ 2.76
SHMT2-225ENST00000556798 WIZO95785 1651 aa32.26■■■□□ 2.75
SHMT2-225ENST00000556798 HMGXB3Q12766 1538 aa32.24■■■□□ 2.75
SHMT2-225ENST00000556798 RSF1Q96T23 1441 aaPredicted RBP32.2■■■□□ 2.75
SHMT2-225ENST00000556798 BAZ1BQ9UIG0 1483 aaKnown RBP32.19■■■□□ 2.74
SHMT2-225ENST00000556798 TOP2AP11388 1531 aaKnown RBP31.87■■■□□ 2.69
SHMT2-225ENST00000556798 SUPT5HO00267 1087 aaKnown RBP31.59■■■□□ 2.65
SHMT2-225ENST00000556798 NESP48681 1621 aa31.57■■■□□ 2.64
SHMT2-225ENST00000556798 LAMC3Q9Y6N6 1575 aa31.49■■■□□ 2.63
SHMT2-225ENST00000556798 CCDC88BA6NC98 1476 aa31.46■■■□□ 2.63
SHMT2-225ENST00000556798 CADPSQ9ULU8 1353 aa31.39■■■□□ 2.62
SHMT2-225ENST00000556798 ERCC6Q03468 1493 aa31.32■■■□□ 2.6
SHMT2-225ENST00000556798 KIF21AQ7Z4S6 1674 aa31.29■■■□□ 2.6
SHMT2-225ENST00000556798 CFTRP13569 1480 aa31.27■■■□□ 2.6
SHMT2-225ENST00000556798 PRDM2Q13029 1718 aa31.24■■■□□ 2.59
SHMT2-225ENST00000556798 PDS5BQ9NTI5 1447 aa31.2■■■□□ 2.59
SHMT2-225ENST00000556798 FANCD2Q9BXW9 1451 aa31.08■■■□□ 2.57
SHMT2-225ENST00000556798 THOC2Q8NI27 1593 aaKnown RBP31.07■■■□□ 2.56
SHMT2-225ENST00000556798 CEP164Q9UPV0 1460 aa31.03■■■□□ 2.56
SHMT2-225ENST00000556798 MRC2Q9UBG0 1479 aa30.93■■■□□ 2.54
SHMT2-225ENST00000556798 CUX2O14529 1486 aa30.85■■■□□ 2.53
SHMT2-225ENST00000556798 WDR62O43379 1518 aa30.84■■■□□ 2.53
SHMT2-225ENST00000556798 URB2Q14146 1524 aaKnown RBP30.78■■■□□ 2.52
SHMT2-225ENST00000556798 TOPBP1Q92547 1522 aa30.63■■■□□ 2.49
SHMT2-225ENST00000556798 DNMBPQ6XZF7 1577 aa30.63■■■□□ 2.49
SHMT2-225ENST00000556798 ABCC8Q09428 1581 aa30.57■■■□□ 2.48
SHMT2-225ENST00000556798 CUX1P39880 1505 aa30.52■■■□□ 2.48
SHMT2-225ENST00000556798 POLA1P09884 1462 aaPredicted RBP30.38■■■□□ 2.45
SHMT2-225ENST00000556798 FGD5Q6ZNL6 1462 aa30.37■■■□□ 2.45
SHMT2-225ENST00000556798 SYNJ1O43426 1573 aa30.37■■■□□ 2.45
SHMT2-225ENST00000556798 WRNQ14191 1432 aaPredicted RBP eCLIP30.36■■■□□ 2.45
SHMT2-225ENST00000556798 BIVM-ERCC5R4GMW8 1640 aa30.34■■■□□ 2.45
SHMT2-225ENST00000556798 IFT140Q96RY7 1462 aa30.33■■■□□ 2.45
SHMT2-225ENST00000556798 TOP2BQ02880 1626 aa30.31■■■□□ 2.44
SHMT2-225ENST00000556798 TARBP1Q13395 1621 aaKnown RBP30.31■■■□□ 2.44
SHMT2-225ENST00000556798 RAD54L2Q9Y4B4 1467 aa30.26■■■□□ 2.44
SHMT2-225ENST00000556798 ZNF608Q9ULD9 1512 aaPredicted RBP30.23■■■□□ 2.43
SHMT2-225ENST00000556798 SOGA1O94964 1423 aa30.22■■■□□ 2.43
SHMT2-225ENST00000556798 WDR97A6NE52 1622 aa30.18■■■□□ 2.42
SHMT2-225ENST00000556798 EIF4G3O43432 1585 aaKnown RBP30.18■■■□□ 2.42
SHMT2-225ENST00000556798 AQRO60306 1485 aaKnown RBP eCLIP30.07■■■□□ 2.4
SHMT2-225ENST00000556798 ABCA10Q8WWZ4 1543 aa30.04■■■□□ 2.4
SHMT2-225ENST00000556798 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
SHMT2-225ENST00000556798 ABCA5Q8WWZ7 1642 aa29.97■■■□□ 2.39
SHMT2-225ENST00000556798 PBRM1Q86U86 1689 aa29.96■■■□□ 2.39
SHMT2-225ENST00000556798 GAPVD1Q14C86 1478 aa29.9■■■□□ 2.38
SHMT2-225ENST00000556798 GRIN2BQ13224 1484 aa29.85■■■□□ 2.37
SHMT2-225ENST00000556798 SNAPC4Q5SXM2 1469 aa29.82■■■□□ 2.36
SHMT2-225ENST00000556798 CHD1O14646 1710 aa29.81■■■□□ 2.36
SHMT2-225ENST00000556798 TRIM41Q8WV44 630 aa29.77■■■□□ 2.36
SHMT2-225ENST00000556798 MAGI1Q96QZ7 1491 aaPredicted RBP29.74■■■□□ 2.35
SHMT2-225ENST00000556798 ERICH3Q5RHP9 1530 aa29.69■■■□□ 2.34
SHMT2-225ENST00000556798 KIF27Q86VH2 1401 aa29.69■■■□□ 2.34
SHMT2-225ENST00000556798 ADAMTS12P58397 1594 aa29.68■■■□□ 2.34
SHMT2-225ENST00000556798 SYNJ2O15056 1496 aa29.63■■■□□ 2.33
SHMT2-225ENST00000556798 FBLN2P98095 1184 aa29.63■■■□□ 2.33
SHMT2-225ENST00000556798 CHIC1Q5VXU3 224 aa29.58■■■□□ 2.33
SHMT2-225ENST00000556798 RUSC2Q8N2Y8 1516 aa29.57■■■□□ 2.32
SHMT2-225ENST00000556798 OSCARQ8IYS5 282 aa29.56■■■□□ 2.32
SHMT2-225ENST00000556798 DNAJC5Q9H3Z4 198 aa29.56■■■□□ 2.32
SHMT2-225ENST00000556798 CHMP7Q8WUX9 453 aaPredicted RBP29.55■■■□□ 2.32
SHMT2-225ENST00000556798 FHAD1B1AJZ9 1412 aa29.54■■■□□ 2.32
SHMT2-225ENST00000556798 CUL7Q14999 1698 aa29.53■■■□□ 2.32
SHMT2-225ENST00000556798 IGF1RP08069 1367 aa29.51■■■□□ 2.31
SHMT2-225ENST00000556798 GRIN2AQ12879 1464 aa29.49■■■□□ 2.31
SHMT2-225ENST00000556798 CLASP1Q7Z460 1538 aa29.39■■■□□ 2.3
SHMT2-225ENST00000556798 CEP170Q5SW79 1584 aa29.39■■■□□ 2.29
SHMT2-225ENST00000556798 CARMIL1Q5VZK9 1371 aa29.36■■■□□ 2.29
SHMT2-225ENST00000556798 NUP160Q12769 1436 aa29.33■■■□□ 2.29
SHMT2-225ENST00000556798 EEA1Q15075 1411 aa29.25■■■□□ 2.27
SHMT2-225ENST00000556798 RAPGEF2Q9Y4G8 1499 aa29.23■■■□□ 2.27
SHMT2-225ENST00000556798 FAM9AQ8IZU1 332 aaPredicted RBP29.22■■■□□ 2.27
SHMT2-225ENST00000556798 RIMBP3CA6NJZ7 1639 aa29.22■■■□□ 2.27
SHMT2-225ENST00000556798 RIMBP3BA6NNM3 1639 aa29.22■■■□□ 2.27
SHMT2-225ENST00000556798 RIMBP3Q9UFD9 1639 aa29.22■■■□□ 2.27
SHMT2-225ENST00000556798 ARHGEF11O15085 1522 aa29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms