RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
CCDC88C-212ENST00000556767 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.49
CCDC88C-212ENST00000556767 ABCC9O60706 1549 aa23.79■■□□□ 1.4
CCDC88C-212ENST00000556767 DCAF8L2P0C7V8 631 aa23.05■■□□□ 1.28
CCDC88C-212ENST00000556767 RB1CC1Q8TDY2 1594 aa22.88■■□□□ 1.25
CCDC88C-212ENST00000556767 ZCCHC6Q5VYS8 1495 aaKnown RBP22.87■■□□□ 1.25
CCDC88C-212ENST00000556767 NACADO15069 1562 aa22.86■■□□□ 1.25
CCDC88C-212ENST00000556767 MYO15BQ96JP2 1530 aa22.7■■□□□ 1.22
CCDC88C-212ENST00000556767 DCAF1Q9Y4B6 1507 aa22.66■■□□□ 1.22
CCDC88C-212ENST00000556767 UNC13AQ9UPW8 1703 aa22.34■■□□□ 1.17
CCDC88C-212ENST00000556767 SCRIBQ14160 1630 aa22.28■■□□□ 1.16
CCDC88C-212ENST00000556767 PABPN1Q86U42 306 aaKnown RBP eCLIP22.27■■□□□ 1.16
CCDC88C-212ENST00000556767 BICRAQ9NZM4 1560 aa22.14■■□□□ 1.13
CCDC88C-212ENST00000556767 SHROOM4Q9ULL8 1493 aa21.89■■□□□ 1.09
CCDC88C-212ENST00000556767 DNAJC5BQ9UF47 199 aa21.69■■□□□ 1.06
CCDC88C-212ENST00000556767 EIF4G1Q04637 1599 aaKnown RBP21.58■■□□□ 1.05
CCDC88C-212ENST00000556767 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
CCDC88C-212ENST00000556767 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.02
CCDC88C-212ENST00000556767 SMARCA4P51532 1647 aa21.28■■□□□ 1
CCDC88C-212ENST00000556767 BAZ1AQ9NRL2 1556 aaPredicted RBP21.27■■□□□ 1
CCDC88C-212ENST00000556767 MROH2BQ7Z745 1585 aa21.17■□□□□ 0.98
CCDC88C-212ENST00000556767 ATAD2BQ9ULI0 1458 aa21.13■□□□□ 0.97
CCDC88C-212ENST00000556767 SMARCA2P51531 1590 aa21.12■□□□□ 0.97
CCDC88C-212ENST00000556767 NCAPD3P42695 1498 aa21.08■□□□□ 0.97
CCDC88C-212ENST00000556767 PEG3Q9GZU2 1588 aa21.02■□□□□ 0.95
CCDC88C-212ENST00000556767 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
CCDC88C-212ENST00000556767 HMGXB3Q12766 1538 aa20.99■□□□□ 0.95
CCDC88C-212ENST00000556767 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
CCDC88C-212ENST00000556767 WIZO95785 1651 aa20.96■□□□□ 0.95
CCDC88C-212ENST00000556767 TOP2AP11388 1531 aaKnown RBP20.73■□□□□ 0.91
CCDC88C-212ENST00000556767 SUPT5HO00267 1087 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-212ENST00000556767 NESP48681 1621 aa20.59■□□□□ 0.89
CCDC88C-212ENST00000556767 LAMC3Q9Y6N6 1575 aa20.52■□□□□ 0.88
CCDC88C-212ENST00000556767 ERCC6Q03468 1493 aa20.51■□□□□ 0.87
CCDC88C-212ENST00000556767 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
CCDC88C-212ENST00000556767 CCDC88BA6NC98 1476 aa20.5■□□□□ 0.87
CCDC88C-212ENST00000556767 PDS5BQ9NTI5 1447 aa20.41■□□□□ 0.86
CCDC88C-212ENST00000556767 CFTRP13569 1480 aa20.38■□□□□ 0.85
CCDC88C-212ENST00000556767 KIF21AQ7Z4S6 1674 aa20.34■□□□□ 0.85
CCDC88C-212ENST00000556767 FANCD2Q9BXW9 1451 aa20.28■□□□□ 0.84
CCDC88C-212ENST00000556767 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
CCDC88C-212ENST00000556767 PRDM2Q13029 1718 aa20.24■□□□□ 0.83
CCDC88C-212ENST00000556767 THOC2Q8NI27 1593 aaKnown RBP20.21■□□□□ 0.83
CCDC88C-212ENST00000556767 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
CCDC88C-212ENST00000556767 CUX2O14529 1486 aa20.18■□□□□ 0.82
CCDC88C-212ENST00000556767 WDR62O43379 1518 aa20.09■□□□□ 0.81
CCDC88C-212ENST00000556767 URB2Q14146 1524 aaKnown RBP20.06■□□□□ 0.8
CCDC88C-212ENST00000556767 TOPBP1Q92547 1522 aa19.97■□□□□ 0.79
CCDC88C-212ENST00000556767 ABCC8Q09428 1581 aa19.96■□□□□ 0.79
CCDC88C-212ENST00000556767 DNMBPQ6XZF7 1577 aa19.95■□□□□ 0.78
CCDC88C-212ENST00000556767 CUX1P39880 1505 aa19.85■□□□□ 0.77
CCDC88C-212ENST00000556767 IFT140Q96RY7 1462 aa19.81■□□□□ 0.76
CCDC88C-212ENST00000556767 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
CCDC88C-212ENST00000556767 WRNQ14191 1432 aaPredicted RBP eCLIP19.79■□□□□ 0.76
CCDC88C-212ENST00000556767 FGD5Q6ZNL6 1462 aa19.79■□□□□ 0.76
CCDC88C-212ENST00000556767 SOGA1O94964 1423 aa19.76■□□□□ 0.75
CCDC88C-212ENST00000556767 RAD54L2Q9Y4B4 1467 aa19.74■□□□□ 0.75
CCDC88C-212ENST00000556767 ZNF608Q9ULD9 1512 aaPredicted RBP19.72■□□□□ 0.75
CCDC88C-212ENST00000556767 SYNJ1O43426 1573 aa19.72■□□□□ 0.75
CCDC88C-212ENST00000556767 TOP2BQ02880 1626 aa19.7■□□□□ 0.74
CCDC88C-212ENST00000556767 TARBP1Q13395 1621 aaKnown RBP19.7■□□□□ 0.74
CCDC88C-212ENST00000556767 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
CCDC88C-212ENST00000556767 TDRD9Q8NDG6 1382 aaKnown RBP19.64■□□□□ 0.73
CCDC88C-212ENST00000556767 AQRO60306 1485 aaKnown RBP eCLIP19.64■□□□□ 0.73
CCDC88C-212ENST00000556767 EIF4G3O43432 1585 aaKnown RBP19.64■□□□□ 0.73
CCDC88C-212ENST00000556767 WDR97A6NE52 1622 aa19.57■□□□□ 0.72
CCDC88C-212ENST00000556767 ABCA10Q8WWZ4 1543 aa19.56■□□□□ 0.72
CCDC88C-212ENST00000556767 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
CCDC88C-212ENST00000556767 GRIN2BQ13224 1484 aa19.48■□□□□ 0.71
CCDC88C-212ENST00000556767 ABCA5Q8WWZ7 1642 aa19.47■□□□□ 0.71
CCDC88C-212ENST00000556767 FBLN2P98095 1184 aa19.47■□□□□ 0.71
CCDC88C-212ENST00000556767 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
CCDC88C-212ENST00000556767 SNAPC4Q5SXM2 1469 aa19.46■□□□□ 0.71
CCDC88C-212ENST00000556767 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
CCDC88C-212ENST00000556767 DNAJC5Q9H3Z4 198 aa19.45■□□□□ 0.7
CCDC88C-212ENST00000556767 OSCARQ8IYS5 282 aa19.42■□□□□ 0.7
CCDC88C-212ENST00000556767 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
CCDC88C-212ENST00000556767 CHMP7Q8WUX9 453 aaPredicted RBP19.39■□□□□ 0.69
CCDC88C-212ENST00000556767 CHD1O14646 1710 aa19.39■□□□□ 0.69
CCDC88C-212ENST00000556767 KIF27Q86VH2 1401 aa19.38■□□□□ 0.69
CCDC88C-212ENST00000556767 SYNJ2O15056 1496 aa19.34■□□□□ 0.69
CCDC88C-212ENST00000556767 ERICH3Q5RHP9 1530 aa19.33■□□□□ 0.68
CCDC88C-212ENST00000556767 ADAMTS12P58397 1594 aa19.3■□□□□ 0.68
CCDC88C-212ENST00000556767 FHAD1B1AJZ9 1412 aa19.28■□□□□ 0.68
CCDC88C-212ENST00000556767 CHIC1Q5VXU3 224 aa19.27■□□□□ 0.68
CCDC88C-212ENST00000556767 IGF1RP08069 1367 aa19.25■□□□□ 0.67
CCDC88C-212ENST00000556767 RUSC2Q8N2Y8 1516 aa19.24■□□□□ 0.67
CCDC88C-212ENST00000556767 GRIN2AQ12879 1464 aa19.23■□□□□ 0.67
CCDC88C-212ENST00000556767 CUL7Q14999 1698 aa19.2■□□□□ 0.66
CCDC88C-212ENST00000556767 CARMIL1Q5VZK9 1371 aa19.18■□□□□ 0.66
CCDC88C-212ENST00000556767 CLASP1Q7Z460 1538 aa19.13■□□□□ 0.65
CCDC88C-212ENST00000556767 CEP170Q5SW79 1584 aa19.12■□□□□ 0.65
CCDC88C-212ENST00000556767 NUP160Q12769 1436 aa19.11■□□□□ 0.65
CCDC88C-212ENST00000556767 FAM9AQ8IZU1 332 aaPredicted RBP19.11■□□□□ 0.65
CCDC88C-212ENST00000556767 ARHGEF11O15085 1522 aa19.06■□□□□ 0.64
CCDC88C-212ENST00000556767 RAPGEF2Q9Y4G8 1499 aa19.06■□□□□ 0.64
CCDC88C-212ENST00000556767 CSRNP3Q8WYN3 585 aa19.06■□□□□ 0.64
CCDC88C-212ENST00000556767 RIMBP3CA6NJZ7 1639 aa19.06■□□□□ 0.64
CCDC88C-212ENST00000556767 RIMBP3BA6NNM3 1639 aa19.06■□□□□ 0.64
CCDC88C-212ENST00000556767 RIMBP3Q9UFD9 1639 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms