RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 NISCHQ9Y2I1 1504 aa22.08■■□□□ 1.12
TMEM260-211ENST00000556648 CCDC180Q9P1Z9 1646 aa19■□□□□ 0.63
TMEM260-211ENST00000556648 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.57
TMEM260-211ENST00000556648 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
TMEM260-211ENST00000556648 DCAF8L2P0C7V8 631 aa18.23■□□□□ 0.51
TMEM260-211ENST00000556648 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
TMEM260-211ENST00000556648 SUPT5HO00267 1087 aaKnown RBP17.93■□□□□ 0.46
TMEM260-211ENST00000556648 ABCC9O60706 1549 aa17.8■□□□□ 0.44
TMEM260-211ENST00000556648 MYO15BQ96JP2 1530 aa17.74■□□□□ 0.43
TMEM260-211ENST00000556648 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
TMEM260-211ENST00000556648 NACADO15069 1562 aa17.59■□□□□ 0.41
TMEM260-211ENST00000556648 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
TMEM260-211ENST00000556648 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
TMEM260-211ENST00000556648 CHIC1Q5VXU3 224 aa17.3■□□□□ 0.36
TMEM260-211ENST00000556648 CECR2Q9BXF3 1484 aa17.24■□□□□ 0.35
TMEM260-211ENST00000556648 UNC13AQ9UPW8 1703 aa17.19■□□□□ 0.34
TMEM260-211ENST00000556648 MROH2BQ7Z745 1585 aa17.16■□□□□ 0.34
TMEM260-211ENST00000556648 WIZO95785 1651 aa17.07■□□□□ 0.32
TMEM260-211ENST00000556648 BAZ1AQ9NRL2 1556 aaPredicted RBP16.98■□□□□ 0.31
TMEM260-211ENST00000556648 BICRAQ9NZM4 1560 aa16.96■□□□□ 0.31
TMEM260-211ENST00000556648 SMARCA4P51532 1647 aa16.92■□□□□ 0.3
TMEM260-211ENST00000556648 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.3
TMEM260-211ENST00000556648 TOP2AP11388 1531 aaKnown RBP16.8■□□□□ 0.28
TMEM260-211ENST00000556648 LOC105371045A0A1W2PR82 267 aa16.75■□□□□ 0.27
TMEM260-211ENST00000556648 EIF4G1Q04637 1599 aaKnown RBP16.75■□□□□ 0.27
TMEM260-211ENST00000556648 TRIM41Q8WV44 630 aa16.72■□□□□ 0.27
TMEM260-211ENST00000556648 SMARCA2P51531 1590 aa16.7■□□□□ 0.26
TMEM260-211ENST00000556648 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
TMEM260-211ENST00000556648 AEBP2Q6ZN18 517 aaPredicted RBP16.65■□□□□ 0.26
TMEM260-211ENST00000556648 PEG3Q9GZU2 1588 aa16.61■□□□□ 0.25
TMEM260-211ENST00000556648 FAM9AQ8IZU1 332 aaPredicted RBP16.58■□□□□ 0.24
TMEM260-211ENST00000556648 ABCC8Q09428 1581 aa16.54■□□□□ 0.24
TMEM260-211ENST00000556648 ATAD2BQ9ULI0 1458 aa16.52■□□□□ 0.24
TMEM260-211ENST00000556648 BAZ1BQ9UIG0 1483 aaKnown RBP16.46■□□□□ 0.23
TMEM260-211ENST00000556648 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
TMEM260-211ENST00000556648 PCGF6Q9BYE7 350 aa16.36■□□□□ 0.21
TMEM260-211ENST00000556648 SOGA1O94964 1423 aa16.28■□□□□ 0.2
TMEM260-211ENST00000556648 SYNJ1O43426 1573 aa16.27■□□□□ 0.2
TMEM260-211ENST00000556648 HMGXB3Q12766 1538 aa16.27■□□□□ 0.19
TMEM260-211ENST00000556648 WRNQ14191 1432 aaPredicted RBP eCLIP16.26■□□□□ 0.19
TMEM260-211ENST00000556648 NCAPD3P42695 1498 aa16.25■□□□□ 0.19
TMEM260-211ENST00000556648 RUSC2Q8N2Y8 1516 aa16.24■□□□□ 0.19
TMEM260-211ENST00000556648 HRCP23327 699 aa16.16■□□□□ 0.18
TMEM260-211ENST00000556648 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
TMEM260-211ENST00000556648 EEA1Q15075 1411 aa16.12■□□□□ 0.17
TMEM260-211ENST00000556648 CSRNP3Q8WYN3 585 aa16.09■□□□□ 0.17
TMEM260-211ENST00000556648 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
TMEM260-211ENST00000556648 CC2D2AQ9P2K1 1620 aa16.07■□□□□ 0.16
TMEM260-211ENST00000556648 BIVM-ERCC5R4GMW8 1640 aa16.06■□□□□ 0.16
TMEM260-211ENST00000556648 CEP162Q5TB80 1403 aa16.04■□□□□ 0.16
TMEM260-211ENST00000556648 CFTRP13569 1480 aa16.03■□□□□ 0.16
TMEM260-211ENST00000556648 TNIKQ9UKE5 1360 aa16.02■□□□□ 0.16
TMEM260-211ENST00000556648 PPARGC1BQ86YN6 1023 aaKnown RBP16.02■□□□□ 0.15
TMEM260-211ENST00000556648 GOLGA3Q08378 1498 aa16.02■□□□□ 0.15
TMEM260-211ENST00000556648 CUX1P39880 1505 aa16.01■□□□□ 0.15
TMEM260-211ENST00000556648 KIF21BO75037 1637 aa15.99■□□□□ 0.15
TMEM260-211ENST00000556648 PRDM2Q13029 1718 aa15.98■□□□□ 0.15
TMEM260-211ENST00000556648 UBTFP17480 764 aaKnown RBP15.97■□□□□ 0.15
TMEM260-211ENST00000556648 CEP164Q9UPV0 1460 aa15.96■□□□□ 0.15
TMEM260-211ENST00000556648 RAPGEF2Q9Y4G8 1499 aa15.91■□□□□ 0.14
TMEM260-211ENST00000556648 CADPSQ9ULU8 1353 aa15.89■□□□□ 0.13
TMEM260-211ENST00000556648 TTBK1Q5TCY1 1321 aaPredicted RBP15.83■□□□□ 0.12
TMEM260-211ENST00000556648 CLIP1P30622 1438 aa15.8■□□□□ 0.12
TMEM260-211ENST00000556648 PRXQ9BXM0 1461 aa15.8■□□□□ 0.12
TMEM260-211ENST00000556648 NESP48681 1621 aa15.79■□□□□ 0.12
TMEM260-211ENST00000556648 KIF27Q86VH2 1401 aa15.77■□□□□ 0.12
TMEM260-211ENST00000556648 ERICH3Q5RHP9 1530 aa15.77■□□□□ 0.12
TMEM260-211ENST00000556648 FANCD2Q9BXW9 1451 aa15.77■□□□□ 0.11
TMEM260-211ENST00000556648 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
TMEM260-211ENST00000556648 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
TMEM260-211ENST00000556648 CUX2O14529 1486 aa15.72■□□□□ 0.11
TMEM260-211ENST00000556648 DNAJC5BQ9UF47 199 aa15.71■□□□□ 0.11
TMEM260-211ENST00000556648 VPS8Q8N3P4 1428 aa15.7■□□□□ 0.1
TMEM260-211ENST00000556648 DNMBPQ6XZF7 1577 aa15.67■□□□□ 0.1
TMEM260-211ENST00000556648 ARAP1Q96P48 1450 aa15.66■□□□□ 0.1
TMEM260-211ENST00000556648 TOPBP1Q92547 1522 aa15.65■□□□□ 0.1
TMEM260-211ENST00000556648 LAMC3Q9Y6N6 1575 aa15.64■□□□□ 0.09
TMEM260-211ENST00000556648 IGF1RP08069 1367 aa15.64■□□□□ 0.09
TMEM260-211ENST00000556648 RAD54L2Q9Y4B4 1467 aa15.63■□□□□ 0.09
TMEM260-211ENST00000556648 POLA1P09884 1462 aaPredicted RBP15.61■□□□□ 0.09
TMEM260-211ENST00000556648 ZEB1P37275 1124 aaPredicted RBP15.6■□□□□ 0.09
TMEM260-211ENST00000556648 URB2Q14146 1524 aaKnown RBP15.59■□□□□ 0.09
TMEM260-211ENST00000556648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.58■□□□□ 0.09
TMEM260-211ENST00000556648 ABCA10Q8WWZ4 1543 aa15.56■□□□□ 0.08
TMEM260-211ENST00000556648 CARMIL1Q5VZK9 1371 aa15.56■□□□□ 0.08
TMEM260-211ENST00000556648 KIF21AQ7Z4S6 1674 aa15.56■□□□□ 0.08
TMEM260-211ENST00000556648 ARHGAP35Q9NRY4 1499 aa15.55■□□□□ 0.08
TMEM260-211ENST00000556648 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
TMEM260-211ENST00000556648 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
TMEM260-211ENST00000556648 APLP2Q06481 763 aa15.49■□□□□ 0.07
TMEM260-211ENST00000556648 CCER1Q8TC90 406 aaPredicted RBP15.49■□□□□ 0.07
TMEM260-211ENST00000556648 ABCA5Q8WWZ7 1642 aa15.45■□□□□ 0.06
TMEM260-211ENST00000556648 CUL7Q14999 1698 aa15.44■□□□□ 0.06
TMEM260-211ENST00000556648 KANK4Q5T7N3 995 aaPredicted RBP15.44■□□□□ 0.06
TMEM260-211ENST00000556648 HNRNPUL2Q1KMD3 747 aaKnown RBP15.42■□□□□ 0.06
TMEM260-211ENST00000556648 TDRD9Q8NDG6 1382 aaKnown RBP15.42■□□□□ 0.06
TMEM260-211ENST00000556648 CTTNBP2Q8WZ74 1663 aa15.38■□□□□ 0.05
TMEM260-211ENST00000556648 TARBP1Q13395 1621 aaKnown RBP15.38■□□□□ 0.05
TMEM260-211ENST00000556648 GAPVD1Q14C86 1478 aa15.37■□□□□ 0.05
TMEM260-211ENST00000556648 P3H3Q8IVL6 736 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms